FF:10188-103D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005072 | ||
|accession_numbers=CAGE;DRX008634;DRR009506;DRZ000931;DRZ002316;DRZ012281;DRZ013666 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002360,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000094,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0010743 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010188 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebral%2520meninges%252c%2520adult.CNhs12840.10188-103D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10188-103D8 | |id=FF:10188-103D8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010188 | ||
|is_obsolete= | |||
|library_id=CNhs12840 | |||
|library_id_phase_based=2:CNhs12840 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10188 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10188 | |||
|name=cerebral meninges, adult | |name=cerebral meninges, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12840,LSID973,release012,COMPLETED | |profile_hcage=CNhs12840,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234043-10 | |rna_catalog_number=R1234043-10 | ||
| Line 56: | Line 78: | ||
|rna_tube_id=103D8 | |rna_tube_id=103D8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age=66 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.76196367908281e-284!GO:0005737;cytoplasm;1.47344888436497e-169!GO:0044444;cytoplasmic part;9.45378966092444e-110!GO:0043226;organelle;1.20774802452353e-91!GO:0043229;intracellular organelle;3.91931592634956e-91!GO:0043227;membrane-bound organelle;9.12407290055969e-86!GO:0043231;intracellular membrane-bound organelle;1.38294824512283e-85!GO:0005515;protein binding;2.90395691739257e-79!GO:0032991;macromolecular complex;7.75760126462176e-66!GO:0044422;organelle part;5.08179665431155e-64!GO:0044446;intracellular organelle part;4.47825781533758e-63!GO:0016043;cellular component organization and biogenesis;1.57838921591457e-49!GO:0030529;ribonucleoprotein complex;2.38835089636934e-48!GO:0005739;mitochondrion;2.45148944158006e-45!GO:0003723;RNA binding;3.15697801033671e-38!GO:0033036;macromolecule localization;6.75095390202424e-38!GO:0015031;protein transport;1.33998358256927e-37!GO:0043234;protein complex;9.94557972674315e-36!GO:0008104;protein localization;6.99854184633917e-35!GO:0031090;organelle membrane;7.25481999725288e-35!GO:0045184;establishment of protein localization;1.72381262888823e-34!GO:0044429;mitochondrial part;2.70464757746997e-33!GO:0043233;organelle lumen;3.30454537226732e-30!GO:0031974;membrane-enclosed lumen;3.30454537226732e-30!GO:0005840;ribosome;2.57045697685988e-29!GO:0005829;cytosol;3.17269634647634e-29!GO:0046907;intracellular transport;3.5071421550319e-29!GO:0051649;establishment of cellular localization;1.71504967120123e-27!GO:0051641;cellular localization;2.77230123519192e-27!GO:0016192;vesicle-mediated transport;4.40807124498438e-27!GO:0044428;nuclear part;1.41965124877768e-26!GO:0031967;organelle envelope;3.38869575575609e-26!GO:0031975;envelope;3.42984203878293e-26!GO:0003735;structural constituent of ribosome;3.04554635362787e-25!GO:0019538;protein metabolic process;8.82981337986851e-25!GO:0016071;mRNA metabolic process;3.09863324633683e-23!GO:0008380;RNA splicing;1.13444693181676e-22!GO:0006119;oxidative phosphorylation;1.48082494834671e-22!GO:0005740;mitochondrial envelope;3.85127389444558e-22!GO:0006412;translation;4.70784960486152e-22!GO:0033279;ribosomal subunit;4.81898611518159e-22!GO:0006886;intracellular protein transport;7.89881505566006e-22!GO:0006396;RNA processing;1.18795694163534e-21!GO:0031966;mitochondrial membrane;1.47520985739427e-21!GO:0044260;cellular macromolecule metabolic process;3.59571758400163e-21!GO:0031982;vesicle;5.89211871953522e-21!GO:0044267;cellular protein metabolic process;1.25586950640253e-20!GO:0031410;cytoplasmic vesicle;3.0581897808163e-20!GO:0019866;organelle inner membrane;5.81541369677584e-20!GO:0044238;primary metabolic process;6.80306154404276e-20!GO:0031988;membrane-bound vesicle;7.49868838230379e-20!GO:0006397;mRNA processing;7.85430296054512e-20!GO:0005743;mitochondrial inner membrane;1.24405329069941e-19!GO:0044237;cellular metabolic process;2.34358672726322e-19!GO:0016023;cytoplasmic membrane-bound vesicle;4.16783808318036e-19!GO:0065003;macromolecular complex assembly;5.12767490490797e-19!GO:0005794;Golgi apparatus;2.80737600889234e-18!GO:0043170;macromolecule metabolic process;2.8759871714989e-18!GO:0044455;mitochondrial membrane part;9.24075200885651e-18!GO:0006996;organelle organization and biogenesis;1.37971537342692e-17!GO:0022607;cellular component assembly;1.79188818719378e-17!GO:0005634;nucleus;4.90756657841536e-17!GO:0005746;mitochondrial respiratory chain;5.31072098338884e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.56802522856015e-16!GO:0009058;biosynthetic process;2.70256845860127e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.37632538593033e-16!GO:0044445;cytosolic part;1.05725817444164e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.09255323362273e-15!GO:0003954;NADH dehydrogenase activity;1.09255323362273e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.09255323362273e-15!GO:0005681;spliceosome;1.10069957245933e-15!GO:0048770;pigment granule;1.22038446019875e-15!GO:0042470;melanosome;1.22038446019875e-15!GO:0044249;cellular biosynthetic process;2.4114480905166e-15!GO:0031981;nuclear lumen;4.44906845389636e-15!GO:0009059;macromolecule biosynthetic process;5.21117919637372e-15!GO:0006457;protein folding;1.47387287104113e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.62557234819122e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.74519714651568e-14!GO:0016462;pyrophosphatase activity;3.53396422662433e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;4.07932289338284e-14!GO:0031980;mitochondrial lumen;6.858126995725e-14!GO:0005759;mitochondrial matrix;6.858126995725e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.01741534103573e-13!GO:0045271;respiratory chain complex I;1.01741534103573e-13!GO:0005747;mitochondrial respiratory chain complex I;1.01741534103573e-13!GO:0017111;nucleoside-triphosphatase activity;1.5248513755065e-13!GO:0003924;GTPase activity;3.44152755885942e-13!GO:0045045;secretory pathway;3.53527582525835e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.59743063458995e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.93293766823761e-13!GO:0042773;ATP synthesis coupled electron transport;3.93293766823761e-13!GO:0000166;nucleotide binding;3.97007160237274e-13!GO:0006810;transport;7.75664668161176e-13!GO:0012505;endomembrane system;1.05931232752571e-12!GO:0022618;protein-RNA complex assembly;1.69723588178174e-12!GO:0015935;small ribosomal subunit;2.33232868647733e-12!GO:0006512;ubiquitin cycle;4.35452785060325e-12!GO:0051082;unfolded protein binding;9.36631308970679e-12!GO:0051179;localization;1.65601297710166e-11!GO:0043228;non-membrane-bound organelle;1.77785091821635e-11!GO:0043232;intracellular non-membrane-bound organelle;1.77785091821635e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.08217372656023e-11!GO:0019829;cation-transporting ATPase activity;5.56091457203226e-11!GO:0048193;Golgi vesicle transport;7.57640160579708e-11!GO:0030135;coated vesicle;9.68171603354758e-11!GO:0008092;cytoskeletal protein binding;1.01431501487505e-10!GO:0008135;translation factor activity, nucleic acid binding;1.01431501487505e-10!GO:0015934;large ribosomal subunit;1.07397512325548e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.24937276612256e-10!GO:0007264;small GTPase mediated signal transduction;1.43126300706627e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.30971281698516e-10!GO:0051234;establishment of localization;2.91521396598214e-10!GO:0006605;protein targeting;3.11811064844255e-10!GO:0032553;ribonucleotide binding;3.31342394261646e-10!GO:0032555;purine ribonucleotide binding;3.31342394261646e-10!GO:0005525;GTP binding;3.47759627952169e-10!GO:0008134;transcription factor binding;6.83017855751159e-10!GO:0043687;post-translational protein modification;9.10764346694819e-10!GO:0043412;biopolymer modification;1.51417849444218e-09!GO:0032561;guanyl ribonucleotide binding;1.81388558211184e-09!GO:0019001;guanyl nucleotide binding;1.81388558211184e-09!GO:0016874;ligase activity;1.99291690434064e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.02558676124516e-09!GO:0017076;purine nucleotide binding;2.46308637561817e-09!GO:0006464;protein modification process;2.47136243839076e-09!GO:0005768;endosome;2.88898800344869e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.28196584704844e-09!GO:0019941;modification-dependent protein catabolic process;3.45019652595323e-09!GO:0043632;modification-dependent macromolecule catabolic process;3.45019652595323e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.66609256326986e-09!GO:0007399;nervous system development;4.37560267825257e-09!GO:0044257;cellular protein catabolic process;5.00014941322898e-09!GO:0032940;secretion by cell;5.31668596736678e-09!GO:0005783;endoplasmic reticulum;6.27549334216116e-09!GO:0016044;membrane organization and biogenesis;6.73228137624803e-09!GO:0005761;mitochondrial ribosome;6.76754468539754e-09!GO:0000313;organellar ribosome;6.76754468539754e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.21823694076228e-09!GO:0008565;protein transporter activity;9.29317081797136e-09!GO:0006793;phosphorus metabolic process;1.03502662553753e-08!GO:0006796;phosphate metabolic process;1.03502662553753e-08!GO:0005654;nucleoplasm;1.10053345566135e-08!GO:0015986;ATP synthesis coupled proton transport;1.18880305044468e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18880305044468e-08!GO:0043005;neuron projection;1.45560936637182e-08!GO:0048523;negative regulation of cellular process;1.82359136997373e-08!GO:0051186;cofactor metabolic process;1.82359136997373e-08!GO:0044265;cellular macromolecule catabolic process;1.89338289103937e-08!GO:0044431;Golgi apparatus part;2.16395045688966e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.24415585418299e-08!GO:0006413;translational initiation;6.41757755453599e-08!GO:0007010;cytoskeleton organization and biogenesis;7.72290452662035e-08!GO:0043283;biopolymer metabolic process;7.7475638352569e-08!GO:0044451;nucleoplasm part;8.14788986552524e-08!GO:0009055;electron carrier activity;8.48985733585179e-08!GO:0006446;regulation of translational initiation;9.16973549581063e-08!GO:0006461;protein complex assembly;1.07274889294925e-07!GO:0003743;translation initiation factor activity;1.11752164009678e-07!GO:0030136;clathrin-coated vesicle;1.29919397150227e-07!GO:0030163;protein catabolic process;1.69455850927653e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.77621486227873e-07!GO:0046034;ATP metabolic process;1.86034989363943e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.21266521095001e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.21266521095001e-07!GO:0048519;negative regulation of biological process;2.40453694481871e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.43734134531765e-07!GO:0000375;RNA splicing, via transesterification reactions;2.43734134531765e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.43734134531765e-07!GO:0019717;synaptosome;2.48291784301165e-07!GO:0043285;biopolymer catabolic process;2.76452284280226e-07!GO:0009141;nucleoside triphosphate metabolic process;3.07241935846065e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.29060595522133e-07!GO:0044248;cellular catabolic process;3.29060595522133e-07!GO:0008639;small protein conjugating enzyme activity;3.47224761576446e-07!GO:0009060;aerobic respiration;4.3566735770603e-07!GO:0006754;ATP biosynthetic process;5.02303944428699e-07!GO:0006753;nucleoside phosphate metabolic process;5.02303944428699e-07!GO:0048471;perinuclear region of cytoplasm;5.09126843804521e-07!GO:0010467;gene expression;5.64657089481945e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.79213456270745e-07!GO:0006913;nucleocytoplasmic transport;5.85722444063789e-07!GO:0004842;ubiquitin-protein ligase activity;6.64380356498025e-07!GO:0045333;cellular respiration;7.60976069511795e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.89930100699054e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.89930100699054e-07!GO:0051169;nuclear transport;8.81698933199188e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.03099678676855e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.26488059310158e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.26488059310158e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.38005542974823e-06!GO:0009150;purine ribonucleotide metabolic process;1.38822353026017e-06!GO:0030029;actin filament-based process;1.41074886907395e-06!GO:0006163;purine nucleotide metabolic process;1.65523302376848e-06!GO:0005730;nucleolus;1.74720884632637e-06!GO:0009057;macromolecule catabolic process;1.80124297837209e-06!GO:0019787;small conjugating protein ligase activity;2.00496616590858e-06!GO:0003779;actin binding;2.17425109859403e-06!GO:0016310;phosphorylation;2.47525229567316e-06!GO:0031252;leading edge;2.55885838246542e-06!GO:0008287;protein serine/threonine phosphatase complex;2.55885838246542e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.62527731028838e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.66742739609291e-06!GO:0000139;Golgi membrane;2.68443350654395e-06!GO:0005083;small GTPase regulator activity;2.89013371269343e-06!GO:0006164;purine nucleotide biosynthetic process;3.23018491539389e-06!GO:0030695;GTPase regulator activity;3.23018491539389e-06!GO:0016604;nuclear body;3.23018491539389e-06!GO:0017038;protein import;3.58940294402067e-06!GO:0006732;coenzyme metabolic process;3.6227993244105e-06!GO:0000902;cell morphogenesis;3.79232958143336e-06!GO:0032989;cellular structure morphogenesis;3.79232958143336e-06!GO:0009259;ribonucleotide metabolic process;4.09423839306763e-06!GO:0006897;endocytosis;5.11467945145324e-06!GO:0010324;membrane invagination;5.11467945145324e-06!GO:0007242;intracellular signaling cascade;5.15203494125357e-06!GO:0019226;transmission of nerve impulse;6.32040386886222e-06!GO:0031965;nuclear membrane;7.04809260711985e-06!GO:0044440;endosomal part;7.91020119205092e-06!GO:0010008;endosome membrane;7.91020119205092e-06!GO:0048475;coated membrane;7.98248747736977e-06!GO:0030117;membrane coat;7.98248747736977e-06!GO:0006099;tricarboxylic acid cycle;8.3352161748825e-06!GO:0046356;acetyl-CoA catabolic process;8.3352161748825e-06!GO:0005905;coated pit;1.00682732572474e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.12326016077252e-05!GO:0045259;proton-transporting ATP synthase complex;1.14049795667777e-05!GO:0009260;ribonucleotide biosynthetic process;1.1744030632517e-05!GO:0048489;synaptic vesicle transport;1.32618194679207e-05!GO:0016607;nuclear speck;1.66261487065958e-05!GO:0019899;enzyme binding;1.83904072563066e-05!GO:0015631;tubulin binding;1.91306259841108e-05!GO:0005635;nuclear envelope;1.93931010092707e-05!GO:0009109;coenzyme catabolic process;2.17416322740208e-05!GO:0030120;vesicle coat;2.52628992382576e-05!GO:0030662;coated vesicle membrane;2.52628992382576e-05!GO:0005770;late endosome;3.38867630674753e-05!GO:0051187;cofactor catabolic process;3.40832603613781e-05!GO:0007269;neurotransmitter secretion;3.40832603613781e-05!GO:0032446;protein modification by small protein conjugation;3.88311443957854e-05!GO:0003712;transcription cofactor activity;3.88311443957854e-05!GO:0005769;early endosome;3.95163476702695e-05!GO:0000245;spliceosome assembly;4.04162538963022e-05!GO:0016881;acid-amino acid ligase activity;4.04162538963022e-05!GO:0006084;acetyl-CoA metabolic process;4.12872822681902e-05!GO:0030425;dendrite;4.16666408184591e-05!GO:0015630;microtubule cytoskeleton;5.66315909011137e-05!GO:0016567;protein ubiquitination;5.91103530446962e-05!GO:0005798;Golgi-associated vesicle;6.38461626291911e-05!GO:0044432;endoplasmic reticulum part;6.68629113190334e-05!GO:0001505;regulation of neurotransmitter levels;7.27698196707969e-05!GO:0008021;synaptic vesicle;8.17737906528138e-05!GO:0005793;ER-Golgi intermediate compartment;8.59214419872537e-05!GO:0007268;synaptic transmission;0.000106728202195758!GO:0003714;transcription corepressor activity;0.000114809684047055!GO:0019208;phosphatase regulator activity;0.000135972339531203!GO:0032559;adenyl ribonucleotide binding;0.000135972339531203!GO:0051246;regulation of protein metabolic process;0.00014707606318403!GO:0045786;negative regulation of progression through cell cycle;0.000149356902708997!GO:0045055;regulated secretory pathway;0.000159017113908132!GO:0030427;site of polarized growth;0.000161829901112933!GO:0031072;heat shock protein binding;0.000165353297606352!GO:0008047;enzyme activator activity;0.000167838723267234!GO:0051128;regulation of cellular component organization and biogenesis;0.000186421319118636!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000198371717219801!GO:0030426;growth cone;0.000202770539350402!GO:0016564;transcription repressor activity;0.000210387576380102!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000238142019577548!GO:0042623;ATPase activity, coupled;0.000246932669819242!GO:0030133;transport vesicle;0.000278500512851758!GO:0005524;ATP binding;0.000292698269498969!GO:0015980;energy derivation by oxidation of organic compounds;0.000298389850030898!GO:0006613;cotranslational protein targeting to membrane;0.000313317262525793!GO:0006888;ER to Golgi vesicle-mediated transport;0.000314928752874788!GO:0048468;cell development;0.000324130157341561!GO:0030532;small nuclear ribonucleoprotein complex;0.000335417240096172!GO:0005516;calmodulin binding;0.000337203111857661!GO:0008219;cell death;0.000352064137085505!GO:0016265;death;0.000352064137085505!GO:0008361;regulation of cell size;0.000370253672798054!GO:0005874;microtubule;0.000379228667889349!GO:0016887;ATPase activity;0.000391399424739809!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000399766447357959!GO:0012501;programmed cell death;0.000408325834537789!GO:0019888;protein phosphatase regulator activity;0.000408483602523591!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000408483602523591!GO:0030027;lamellipodium;0.000488578296408935!GO:0006606;protein import into nucleus;0.000504529834102412!GO:0007265;Ras protein signal transduction;0.000526092463679665!GO:0006752;group transfer coenzyme metabolic process;0.000548303164283728!GO:0030554;adenyl nucleotide binding;0.000548303164283728!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00058464432607059!GO:0006916;anti-apoptosis;0.000589251521936275!GO:0003729;mRNA binding;0.000615010396141531!GO:0006915;apoptosis;0.000634118489956281!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000634118489956281!GO:0016049;cell growth;0.000676619614424346!GO:0051170;nuclear import;0.0006823320587466!GO:0016311;dephosphorylation;0.000789547728953986!GO:0005789;endoplasmic reticulum membrane;0.000810306992103602!GO:0000159;protein phosphatase type 2A complex;0.00081166566854789!GO:0044453;nuclear membrane part;0.000887428238887359!GO:0033673;negative regulation of kinase activity;0.00092322837266872!GO:0006469;negative regulation of protein kinase activity;0.00092322837266872!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000964490186945709!GO:0015399;primary active transmembrane transporter activity;0.000964490186945709!GO:0009056;catabolic process;0.000978498651979884!GO:0004721;phosphoprotein phosphatase activity;0.0009799978846332!GO:0043566;structure-specific DNA binding;0.000996306551311356!GO:0005643;nuclear pore;0.00100634638210096!GO:0005773;vacuole;0.00103057260513906!GO:0009966;regulation of signal transduction;0.00109500012919521!GO:0042254;ribosome biogenesis and assembly;0.0011431371469723!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00114427267906974!GO:0008017;microtubule binding;0.00120072867473122!GO:0005839;proteasome core complex (sensu Eukaryota);0.0012253934209065!GO:0008601;protein phosphatase type 2A regulator activity;0.00133371867424469!GO:0030118;clathrin coat;0.00136960982098152!GO:0006323;DNA packaging;0.0013938300361119!GO:0022406;membrane docking;0.00139476796262881!GO:0048278;vesicle docking;0.00139476796262881!GO:0000151;ubiquitin ligase complex;0.00142267399810866!GO:0005741;mitochondrial outer membrane;0.00143297695242276!GO:0048167;regulation of synaptic plasticity;0.00163211281360597!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00163211281360597!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00163211281360597!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00163211281360597!GO:0051188;cofactor biosynthetic process;0.00163211281360597!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00164944721702795!GO:0004722;protein serine/threonine phosphatase activity;0.00170674279219948!GO:0009892;negative regulation of metabolic process;0.00185433192400099!GO:0006470;protein amino acid dephosphorylation;0.00185580949219491!GO:0051087;chaperone binding;0.00185600824777089!GO:0012506;vesicle membrane;0.00185600824777089!GO:0006403;RNA localization;0.0018756941883648!GO:0003697;single-stranded DNA binding;0.0019156710297276!GO:0043069;negative regulation of programmed cell death;0.0019156710297276!GO:0051789;response to protein stimulus;0.0019171653965534!GO:0006986;response to unfolded protein;0.0019171653965534!GO:0005048;signal sequence binding;0.00192606040830371!GO:0043492;ATPase activity, coupled to movement of substances;0.00194050954162373!GO:0006904;vesicle docking during exocytosis;0.00205656866920859!GO:0043623;cellular protein complex assembly;0.00212674796877441!GO:0030054;cell junction;0.00215075389162603!GO:0006333;chromatin assembly or disassembly;0.00215161972908196!GO:0050657;nucleic acid transport;0.00222966937652691!GO:0051236;establishment of RNA localization;0.00222966937652691!GO:0050658;RNA transport;0.00222966937652691!GO:0005762;mitochondrial large ribosomal subunit;0.00235462766810545!GO:0000315;organellar large ribosomal subunit;0.00235462766810545!GO:0031968;organelle outer membrane;0.00238185117154841!GO:0048699;generation of neurons;0.00238185117154841!GO:0008154;actin polymerization and/or depolymerization;0.00243084681782793!GO:0001558;regulation of cell growth;0.00243084681782793!GO:0019867;outer membrane;0.00247846600345321!GO:0003724;RNA helicase activity;0.0025661327966411!GO:0008654;phospholipid biosynthetic process;0.00257016987207724!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00262081336763157!GO:0051348;negative regulation of transferase activity;0.00269793141198128!GO:0043066;negative regulation of apoptosis;0.00281603444326647!GO:0016791;phosphoric monoester hydrolase activity;0.00281603444326647!GO:0050803;regulation of synapse structure and activity;0.00281684286483156!GO:0016197;endosome transport;0.00284144229812834!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00297061887440796!GO:0022008;neurogenesis;0.003009414969441!GO:0043681;protein import into mitochondrion;0.00308088528253178!GO:0019887;protein kinase regulator activity;0.00308089034284597!GO:0003746;translation elongation factor activity;0.00308089034284597!GO:0050767;regulation of neurogenesis;0.00325538770887409!GO:0000314;organellar small ribosomal subunit;0.00327880135407404!GO:0005763;mitochondrial small ribosomal subunit;0.00327880135407404!GO:0008139;nuclear localization sequence binding;0.00343763719566343!GO:0005938;cell cortex;0.00372132168155447!GO:0007019;microtubule depolymerization;0.00373075912198019!GO:0008026;ATP-dependent helicase activity;0.00378370775056282!GO:0016301;kinase activity;0.00381361147004842!GO:0019843;rRNA binding;0.00381828469719942!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00384705946753172!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00384705946753172!GO:0004812;aminoacyl-tRNA ligase activity;0.00384705946753172!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00384705946753172!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00392685640106269!GO:0005096;GTPase activator activity;0.00392685640106269!GO:0006414;translational elongation;0.00394850868746127!GO:0043021;ribonucleoprotein binding;0.00395990533108621!GO:0006366;transcription from RNA polymerase II promoter;0.00402910150777071!GO:0048487;beta-tubulin binding;0.00402910150777071!GO:0044433;cytoplasmic vesicle part;0.00411567483043082!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00414525104788559!GO:0004667;prostaglandin-D synthase activity;0.00414525104788559!GO:0050802;circadian sleep/wake cycle, sleep;0.00414525104788559!GO:0022410;circadian sleep/wake cycle process;0.00414525104788559!GO:0042749;regulation of circadian sleep/wake cycle;0.00414525104788559!GO:0030182;neuron differentiation;0.00446682377236832!GO:0019902;phosphatase binding;0.0045009215080427!GO:0004298;threonine endopeptidase activity;0.00452228312839778!GO:0016050;vesicle organization and biogenesis;0.00472747740367155!GO:0005869;dynactin complex;0.0052522105028749!GO:0043407;negative regulation of MAP kinase activity;0.00534743753172885!GO:0019904;protein domain specific binding;0.00542250834517144!GO:0043209;myelin sheath;0.00599908561631148!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00599908561631148!GO:0006892;post-Golgi vesicle-mediated transport;0.00611471449971937!GO:0030424;axon;0.00612366253073603!GO:0051920;peroxiredoxin activity;0.00618537989207538!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00620728070090864!GO:0043086;negative regulation of catalytic activity;0.00672810513755779!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00678297919537676!GO:0001726;ruffle;0.006893157668808!GO:0016859;cis-trans isomerase activity;0.00695795072112537!GO:0043038;amino acid activation;0.00715182767529252!GO:0006418;tRNA aminoacylation for protein translation;0.00715182767529252!GO:0043039;tRNA aminoacylation;0.00715182767529252!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00720782744017127!GO:0000323;lytic vacuole;0.00736317513703746!GO:0005764;lysosome;0.00736317513703746!GO:0031902;late endosome membrane;0.00738795377850319!GO:0006891;intra-Golgi vesicle-mediated transport;0.00738795377850319!GO:0009108;coenzyme biosynthetic process;0.00762162407819013!GO:0046467;membrane lipid biosynthetic process;0.00764967169282351!GO:0005885;Arp2/3 protein complex;0.00768177142347174!GO:0031901;early endosome membrane;0.00771106695320398!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00840467101496373!GO:0006612;protein targeting to membrane;0.00843984053231101!GO:0006607;NLS-bearing substrate import into nucleus;0.00864826951224729!GO:0050811;GABA receptor binding;0.00875595069175904!GO:0051056;regulation of small GTPase mediated signal transduction;0.00883308273565132!GO:0019207;kinase regulator activity;0.00886648912646509!GO:0004674;protein serine/threonine kinase activity;0.00886648912646509!GO:0065002;intracellular protein transport across a membrane;0.00896045317933323!GO:0046488;phosphatidylinositol metabolic process;0.00899859600564808!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0091412066018671!GO:0055083;monovalent inorganic anion homeostasis;0.0091412066018671!GO:0055064;chloride ion homeostasis;0.0091412066018671!GO:0030644;cellular chloride ion homeostasis;0.0091412066018671!GO:0031324;negative regulation of cellular metabolic process;0.00927752635391732!GO:0005791;rough endoplasmic reticulum;0.0102148575868607!GO:0009117;nucleotide metabolic process;0.0105218426402133!GO:0030132;clathrin coat of coated pit;0.0105532453499903!GO:0006887;exocytosis;0.0111234524267746!GO:0031114;regulation of microtubule depolymerization;0.0111234524267746!GO:0007026;negative regulation of microtubule depolymerization;0.0111234524267746!GO:0030041;actin filament polymerization;0.0111234524267746!GO:0030660;Golgi-associated vesicle membrane;0.0112761510693027!GO:0030659;cytoplasmic vesicle membrane;0.0114696234402461!GO:0016568;chromatin modification;0.0114795394927883!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0117115500393183!GO:0050839;cell adhesion molecule binding;0.0117169490988196!GO:0016481;negative regulation of transcription;0.0117739338864475!GO:0016126;sterol biosynthetic process;0.0117739338864475!GO:0030125;clathrin vesicle coat;0.0117739338864475!GO:0030665;clathrin coated vesicle membrane;0.0117739338864475!GO:0007050;cell cycle arrest;0.0117943848166169!GO:0006364;rRNA processing;0.0119260353393873!GO:0006259;DNA metabolic process;0.0119345087230215!GO:0030137;COPI-coated vesicle;0.0120543976954885!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121173798432833!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121173798432833!GO:0051287;NAD binding;0.0127092244384253!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0127214769767102!GO:0044448;cell cortex part;0.0127274712091545!GO:0006402;mRNA catabolic process;0.0128007886288581!GO:0007272;ensheathment of neurons;0.0134970878890955!GO:0008366;axon ensheathment;0.0134970878890955!GO:0065009;regulation of a molecular function;0.0138342647930054!GO:0051261;protein depolymerization;0.0141588868096607!GO:0030742;GTP-dependent protein binding;0.0142953519717376!GO:0051427;hormone receptor binding;0.0143165970382637!GO:0001578;microtubule bundle formation;0.0145994093369638!GO:0008186;RNA-dependent ATPase activity;0.0147288993785031!GO:0005092;GDP-dissociation inhibitor activity;0.0149880681187815!GO:0051726;regulation of cell cycle;0.0150816963687498!GO:0030030;cell projection organization and biogenesis;0.0152021438537841!GO:0048858;cell projection morphogenesis;0.0152021438537841!GO:0032990;cell part morphogenesis;0.0152021438537841!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0153580515514516!GO:0015629;actin cytoskeleton;0.0154566877818148!GO:0030867;rough endoplasmic reticulum membrane;0.0154566877818148!GO:0048500;signal recognition particle;0.0154566877818148!GO:0032011;ARF protein signal transduction;0.0154566877818148!GO:0032012;regulation of ARF protein signal transduction;0.0154566877818148!GO:0001666;response to hypoxia;0.0162362736781666!GO:0007266;Rho protein signal transduction;0.0163615337476782!GO:0005875;microtubule associated complex;0.0164310034136465!GO:0008180;signalosome;0.0165125996762389!GO:0006650;glycerophospholipid metabolic process;0.0167593456926595!GO:0008286;insulin receptor signaling pathway;0.0167593456926595!GO:0030658;transport vesicle membrane;0.0167593456926595!GO:0008250;oligosaccharyl transferase complex;0.0169492852864713!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0175395724822163!GO:0042995;cell projection;0.0178573894759217!GO:0004386;helicase activity;0.0178573894759217!GO:0050789;regulation of biological process;0.0180875357387385!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0183158386949448!GO:0015002;heme-copper terminal oxidase activity;0.0183158386949448!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0183158386949448!GO:0004129;cytochrome-c oxidase activity;0.0183158386949448!GO:0051168;nuclear export;0.0183898682152304!GO:0005868;cytoplasmic dynein complex;0.0183898682152304!GO:0007243;protein kinase cascade;0.0186086890407383!GO:0051028;mRNA transport;0.0192116606500719!GO:0000188;inactivation of MAPK activity;0.0203602011153121!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0210182599407591!GO:0019198;transmembrane receptor protein phosphatase activity;0.0210182599407591!GO:0051540;metal cluster binding;0.0212647044130748!GO:0051536;iron-sulfur cluster binding;0.0212647044130748!GO:0007005;mitochondrion organization and biogenesis;0.0212994283391258!GO:0000074;regulation of progression through cell cycle;0.0213819502700187!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0216472780903536!GO:0048154;S100 beta binding;0.021680813557438!GO:0016072;rRNA metabolic process;0.0217722919275863!GO:0040008;regulation of growth;0.0221977801447803!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0231964139512884!GO:0006091;generation of precursor metabolites and energy;0.0231980676691289!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0232688312645687!GO:0035035;histone acetyltransferase binding;0.0234424461298417!GO:0016272;prefoldin complex;0.0237202246090923!GO:0019903;protein phosphatase binding;0.023871024924934!GO:0035257;nuclear hormone receptor binding;0.023871024924934!GO:0000062;acyl-CoA binding;0.024062233047922!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0243323056636684!GO:0033043;regulation of organelle organization and biogenesis;0.0243323056636684!GO:0016079;synaptic vesicle exocytosis;0.0243395624272975!GO:0046578;regulation of Ras protein signal transduction;0.02443438347782!GO:0007049;cell cycle;0.0247012085842279!GO:0048666;neuron development;0.0248036424494093!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0251344057020691!GO:0048488;synaptic vesicle endocytosis;0.025615727543181!GO:0004683;calmodulin-dependent protein kinase activity;0.0258709315602705!GO:0006818;hydrogen transport;0.0260096782289305!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0261596711718625!GO:0005862;muscle thin filament tropomyosin;0.0262221692770629!GO:0045892;negative regulation of transcription, DNA-dependent;0.0266209588111954!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0267872232216468!GO:0043488;regulation of mRNA stability;0.0270951039584666!GO:0043487;regulation of RNA stability;0.0270951039584666!GO:0050749;apolipoprotein E receptor binding;0.0277395852304573!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.028854620051808!GO:0046930;pore complex;0.029544480017465!GO:0042578;phosphoric ester hydrolase activity;0.0296419417976122!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0298322532881475!GO:0048168;regulation of neuronal synaptic plasticity;0.0298589688317438!GO:0045454;cell redox homeostasis;0.0298962329964514!GO:0007611;learning and/or memory;0.031420938536464!GO:0050750;low-density lipoprotein receptor binding;0.0314493032419424!GO:0004576;oligosaccharyl transferase activity;0.0316045670117643!GO:0008088;axon cargo transport;0.0322229972255475!GO:0042802;identical protein binding;0.0322229972255475!GO:0031371;ubiquitin conjugating enzyme complex;0.0322229972255475!GO:0051252;regulation of RNA metabolic process;0.0325250313263088!GO:0016584;nucleosome positioning;0.0327713484491415!GO:0045296;cadherin binding;0.0328053217778697!GO:0004004;ATP-dependent RNA helicase activity;0.0332232675456703!GO:0007017;microtubule-based process;0.0338401795106383!GO:0030384;phosphoinositide metabolic process;0.0342730180108437!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0347155776142685!GO:0045047;protein targeting to ER;0.0347155776142685!GO:0015992;proton transport;0.035769337277183!GO:0006376;mRNA splice site selection;0.035769337277183!GO:0000389;nuclear mRNA 3'-splice site recognition;0.035769337277183!GO:0030663;COPI coated vesicle membrane;0.035769337277183!GO:0030126;COPI vesicle coat;0.035769337277183!GO:0065004;protein-DNA complex assembly;0.0362577912342727!GO:0009165;nucleotide biosynthetic process;0.0363018129880235!GO:0006595;polyamine metabolic process;0.0366020482108256!GO:0001508;regulation of action potential;0.0369086057500948!GO:0003713;transcription coactivator activity;0.0370406724282579!GO:0030911;TPR domain binding;0.037064281411136!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0371689833242573!GO:0006695;cholesterol biosynthetic process;0.0377247828296014!GO:0000904;cellular morphogenesis during differentiation;0.0377354645195488!GO:0007006;mitochondrial membrane organization and biogenesis;0.0388321101336065!GO:0005100;Rho GTPase activator activity;0.0390678167672556!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0391454553348049!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0397600857416928!GO:0043025;cell soma;0.0399191940263268!GO:0005774;vacuolar membrane;0.0407902013622887!GO:0006661;phosphatidylinositol biosynthetic process;0.0414951110888841!GO:0005813;centrosome;0.0422538403355387!GO:0043284;biopolymer biosynthetic process;0.0422538403355387!GO:0005085;guanyl-nucleotide exchange factor activity;0.043673690948488!GO:0035258;steroid hormone receptor binding;0.0438486139137562!GO:0031109;microtubule polymerization or depolymerization;0.0450337391923705!GO:0004860;protein kinase inhibitor activity;0.045476351029774!GO:0030641;cellular hydrogen ion homeostasis;0.0456181337777216!GO:0042026;protein refolding;0.0456573577878133!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0459515622234217!GO:0019894;kinesin binding;0.0471082593372024!GO:0046903;secretion;0.0476345480809762!GO:0008312;7S RNA binding;0.0487756584618467!GO:0031124;mRNA 3'-end processing;0.0487756584618467!GO:0003711;transcription elongation regulator activity;0.0487756584618467!GO:0001516;prostaglandin biosynthetic process;0.0487756584618467!GO:0046457;prostanoid biosynthetic process;0.0487756584618467!GO:0008429;phosphatidylethanolamine binding;0.0487756584618467!GO:0006665;sphingolipid metabolic process;0.0493195698733798 | |||
|sample_id=10188 | |sample_id=10188 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=EGR1..3:3.99735320905;REST:3.84288814956;NHLH1,2:3.60133139598;MTF1:3.49709746857;ZBTB6:3.31412075514;MTE{core}:3.28229042754;MYFfamily:3.27563510648;PAX6:3.14814860949;ATF2:3.09584997157;RFX1:3.08761322366;MED-1{core}:3.04645805316;CRX:3.04386752917;ZFP161:3.02361829265;PRRX1,2:2.92112586042;TFAP2B:2.88082505628;CUX2:2.68117262567;DBP:2.58220919638;MAZ:2.51517539487;GTF2I:2.5103323456;PAX5:2.4673784908;SOX5:2.44958485417;RFX2..5_RFXANK_RFXAP:2.43182928688;HOXA9_MEIS1:2.43030665794;MZF1:2.35609425064;HBP1_HMGB_SSRP1_UBTF:2.32678012716;OCT4_SOX2{dimer}:2.32414012203;POU5F1:2.28556813523;AHR_ARNT_ARNT2:2.22230741293;PRDM1:2.21962675101;HIC1:2.20195897216;BREu{core}:2.13264058509;HMGA1,2:2.09297882869;PATZ1:2.09266758189;POU6F1:2.06118384693;JUN:2.00173007963;CDC5L:1.94338498535;NFIL3:1.91056835058;SMAD1..7,9:1.89453599829;GCM1,2:1.88946564307;MAFB:1.87120069557;TFDP1:1.84835129412;NKX3-2:1.83940028413;GFI1B:1.8307092402;ADNP_IRX_SIX_ZHX:1.77027852825;HOX{A4,D4}:1.75365047109;ZNF423:1.72503062637;KLF4:1.69391165763;XBP1:1.65678798663;RBPJ:1.6560215177;MYOD1:1.6522574009;LMO2:1.58607984959;SOX2:1.58027915511;TGIF1:1.54712047101;FOXM1:1.53687234667;VSX1,2:1.53138256216;NKX2-3_NKX2-5:1.52195339371;RREB1:1.50536383037;POU3F1..4:1.44004016738;NKX6-1,2:1.43355179471;HAND1,2:1.41319269192;IKZF2:1.35648496622;EBF1:1.34454003445;EP300:1.30077453643;NFIX:1.27117303163;ATF4:1.26003643802;SOX17:1.24278207991;FOXL1:1.20362856892;MYBL2:1.15610363632;RORA:1.15192203311;T:1.11616870858;LEF1_TCF7_TCF7L1,2:1.09599021215;ZIC1..3:1.09212297731;ARID5B:1.07857108949;MEF2{A,B,C,D}:1.0717431446;NRF1:1.04089966213;SP1:1.02033408934;ESRRA:1.01651521836;ONECUT1,2:1.01379831118;TFAP2{A,C}:1.00957966646;GATA4:0.99528303477;FOXD3:0.960021264575;GTF2A1,2:0.948472420868;ZEB1:0.932508839927;FOX{F1,F2,J1}:0.896768100292;FOXQ1:0.895194895153;HMX1:0.890631785202;ALX1:0.890028962175;SOX{8,9,10}:0.874082457643;ZNF238:0.87266186287;CREB1:0.865809622614;ATF5_CREB3:0.846979886557;TEF:0.838458701772;AR:0.819383412614;XCPE1{core}:0.76092232384;ZNF384:0.751300671848;FOXP3:0.742840815444;IKZF1:0.679769909586;PAX1,9:0.607129081116;TLX2:0.592149939175;TLX1..3_NFIC{dimer}:0.577450165952;NANOG:0.572213613465;ATF6:0.558964546906;TBX4,5:0.53542747587;HSF1,2:0.50630260617;SREBF1,2:0.421913187494;NR3C1:0.411856601182;TFAP4:0.361293777003;FOXA2:0.342401218485;BPTF:0.330401394212;FOX{D1,D2}:0.329571558665;HOX{A6,A7,B6,B7}:0.32571505127;ZNF143:0.312826628556;TBP:0.291748434659;NFATC1..3:0.286961838389;GFI1:0.274309045921;bHLH_family:0.257448182438;FOXN1:0.236006875998;GZF1:0.233974823018;UFEwm:0.165524823931;PAX2:0.164014734965;STAT2,4,6:0.14520963726;YY1:0.121075540183;NFE2L1:0.101497651597;PAX3,7:0.0745813140975;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0465214593472;PDX1:0.0323862590226;SNAI1..3:0.0277994150484;SPZ1:-0.0149406447666;NFE2L2:-0.0338512851241;FOXP1:-0.0705642346819;ZNF148:-0.0776246690496;SRF:-0.131175447669;STAT1,3:-0.160287495096;NANOG{mouse}:-0.183235315741;LHX3,4:-0.192607944447;NFY{A,B,C}:-0.210073415816;IRF7:-0.236508788059;TFCP2:-0.26863609448;ESR1:-0.274084986168;DMAP1_NCOR{1,2}_SMARC:-0.282872906537;CEBPA,B_DDIT3:-0.353399651005;FOX{I1,J2}:-0.368346121256;PAX4:-0.38227461785;HNF1A:-0.407350191078;GATA6:-0.41123283935;IRF1,2:-0.417023116023;SPI1:-0.432152286954;PBX1:-0.442889657377;TAL1_TCF{3,4,12}:-0.464335503157;FOXO1,3,4:-0.484306198633;TEAD1:-0.502689284503;NFE2:-0.507864750526;NR1H4:-0.528556454998;CDX1,2,4:-0.59740246052;POU1F1:-0.614795509506;FOSL2:-0.714207199738;GLI1..3:-0.740721081404;BACH2:-0.766674398094;SPIB:-0.769766024408;ETS1,2:-0.786007208641;NR5A1,2:-0.789564867605;HES1:-0.801332339979;ZBTB16:-0.822375703685;ALX4:-0.844145549595;NKX2-2,8:-0.880308320487;FOS_FOS{B,L1}_JUN{B,D}:-0.886648058426;HNF4A_NR2F1,2:-0.914432642865;STAT5{A,B}:-0.916898728062;PAX8:-0.9175102336;HLF:-0.917791091153;HIF1A:-0.956841700455;NKX3-1:-0.965437857468;RUNX1..3:-0.966914856398;NFKB1_REL_RELA:-0.994435892128;TP53:-1.05261894226;RXR{A,B,G}:-1.12991778323;POU2F1..3:-1.17573529053;E2F1..5:-1.20739322232;AIRE:-1.24273520276;EVI1:-1.25188654989;ELK1,4_GABP{A,B1}:-1.38370907144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39214083528;MYB:-1.40048906114;EN1,2:-1.45002957879;RXRA_VDR{dimer}:-1.56180451241;PPARG:-1.70625450133;NR6A1:-1.71627755973;ELF1,2,4:-1.73209892613;NKX2-1,4:-2.03727012434;PITX1..3:-2.38358880794;HOX{A5,B5}:-2.63856121902;TOPORS:-2.77012117974 | |top_motifs=EGR1..3:3.99735320905;REST:3.84288814956;NHLH1,2:3.60133139598;MTF1:3.49709746857;ZBTB6:3.31412075514;MTE{core}:3.28229042754;MYFfamily:3.27563510648;PAX6:3.14814860949;ATF2:3.09584997157;RFX1:3.08761322366;MED-1{core}:3.04645805316;CRX:3.04386752917;ZFP161:3.02361829265;PRRX1,2:2.92112586042;TFAP2B:2.88082505628;CUX2:2.68117262567;DBP:2.58220919638;MAZ:2.51517539487;GTF2I:2.5103323456;PAX5:2.4673784908;SOX5:2.44958485417;RFX2..5_RFXANK_RFXAP:2.43182928688;HOXA9_MEIS1:2.43030665794;MZF1:2.35609425064;HBP1_HMGB_SSRP1_UBTF:2.32678012716;OCT4_SOX2{dimer}:2.32414012203;POU5F1:2.28556813523;AHR_ARNT_ARNT2:2.22230741293;PRDM1:2.21962675101;HIC1:2.20195897216;BREu{core}:2.13264058509;HMGA1,2:2.09297882869;PATZ1:2.09266758189;POU6F1:2.06118384693;JUN:2.00173007963;CDC5L:1.94338498535;NFIL3:1.91056835058;SMAD1..7,9:1.89453599829;GCM1,2:1.88946564307;MAFB:1.87120069557;TFDP1:1.84835129412;NKX3-2:1.83940028413;GFI1B:1.8307092402;ADNP_IRX_SIX_ZHX:1.77027852825;HOX{A4,D4}:1.75365047109;ZNF423:1.72503062637;KLF4:1.69391165763;XBP1:1.65678798663;RBPJ:1.6560215177;MYOD1:1.6522574009;LMO2:1.58607984959;SOX2:1.58027915511;TGIF1:1.54712047101;FOXM1:1.53687234667;VSX1,2:1.53138256216;NKX2-3_NKX2-5:1.52195339371;RREB1:1.50536383037;POU3F1..4:1.44004016738;NKX6-1,2:1.43355179471;HAND1,2:1.41319269192;IKZF2:1.35648496622;EBF1:1.34454003445;EP300:1.30077453643;NFIX:1.27117303163;ATF4:1.26003643802;SOX17:1.24278207991;FOXL1:1.20362856892;MYBL2:1.15610363632;RORA:1.15192203311;T:1.11616870858;LEF1_TCF7_TCF7L1,2:1.09599021215;ZIC1..3:1.09212297731;ARID5B:1.07857108949;MEF2{A,B,C,D}:1.0717431446;NRF1:1.04089966213;SP1:1.02033408934;ESRRA:1.01651521836;ONECUT1,2:1.01379831118;TFAP2{A,C}:1.00957966646;GATA4:0.99528303477;FOXD3:0.960021264575;GTF2A1,2:0.948472420868;ZEB1:0.932508839927;FOX{F1,F2,J1}:0.896768100292;FOXQ1:0.895194895153;HMX1:0.890631785202;ALX1:0.890028962175;SOX{8,9,10}:0.874082457643;ZNF238:0.87266186287;CREB1:0.865809622614;ATF5_CREB3:0.846979886557;TEF:0.838458701772;AR:0.819383412614;XCPE1{core}:0.76092232384;ZNF384:0.751300671848;FOXP3:0.742840815444;IKZF1:0.679769909586;PAX1,9:0.607129081116;TLX2:0.592149939175;TLX1..3_NFIC{dimer}:0.577450165952;NANOG:0.572213613465;ATF6:0.558964546906;TBX4,5:0.53542747587;HSF1,2:0.50630260617;SREBF1,2:0.421913187494;NR3C1:0.411856601182;TFAP4:0.361293777003;FOXA2:0.342401218485;BPTF:0.330401394212;FOX{D1,D2}:0.329571558665;HOX{A6,A7,B6,B7}:0.32571505127;ZNF143:0.312826628556;TBP:0.291748434659;NFATC1..3:0.286961838389;GFI1:0.274309045921;bHLH_family:0.257448182438;FOXN1:0.236006875998;GZF1:0.233974823018;UFEwm:0.165524823931;PAX2:0.164014734965;STAT2,4,6:0.14520963726;YY1:0.121075540183;NFE2L1:0.101497651597;PAX3,7:0.0745813140975;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0465214593472;PDX1:0.0323862590226;SNAI1..3:0.0277994150484;SPZ1:-0.0149406447666;NFE2L2:-0.0338512851241;FOXP1:-0.0705642346819;ZNF148:-0.0776246690496;SRF:-0.131175447669;STAT1,3:-0.160287495096;NANOG{mouse}:-0.183235315741;LHX3,4:-0.192607944447;NFY{A,B,C}:-0.210073415816;IRF7:-0.236508788059;TFCP2:-0.26863609448;ESR1:-0.274084986168;DMAP1_NCOR{1,2}_SMARC:-0.282872906537;CEBPA,B_DDIT3:-0.353399651005;FOX{I1,J2}:-0.368346121256;PAX4:-0.38227461785;HNF1A:-0.407350191078;GATA6:-0.41123283935;IRF1,2:-0.417023116023;SPI1:-0.432152286954;PBX1:-0.442889657377;TAL1_TCF{3,4,12}:-0.464335503157;FOXO1,3,4:-0.484306198633;TEAD1:-0.502689284503;NFE2:-0.507864750526;NR1H4:-0.528556454998;CDX1,2,4:-0.59740246052;POU1F1:-0.614795509506;FOSL2:-0.714207199738;GLI1..3:-0.740721081404;BACH2:-0.766674398094;SPIB:-0.769766024408;ETS1,2:-0.786007208641;NR5A1,2:-0.789564867605;HES1:-0.801332339979;ZBTB16:-0.822375703685;ALX4:-0.844145549595;NKX2-2,8:-0.880308320487;FOS_FOS{B,L1}_JUN{B,D}:-0.886648058426;HNF4A_NR2F1,2:-0.914432642865;STAT5{A,B}:-0.916898728062;PAX8:-0.9175102336;HLF:-0.917791091153;HIF1A:-0.956841700455;NKX3-1:-0.965437857468;RUNX1..3:-0.966914856398;NFKB1_REL_RELA:-0.994435892128;TP53:-1.05261894226;RXR{A,B,G}:-1.12991778323;POU2F1..3:-1.17573529053;E2F1..5:-1.20739322232;AIRE:-1.24273520276;EVI1:-1.25188654989;ELK1,4_GABP{A,B1}:-1.38370907144;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39214083528;MYB:-1.40048906114;EN1,2:-1.45002957879;RXRA_VDR{dimer}:-1.56180451241;PPARG:-1.70625450133;NR6A1:-1.71627755973;ELF1,2,4:-1.73209892613;NKX2-1,4:-2.03727012434;PITX1..3:-2.38358880794;HOX{A5,B5}:-2.63856121902;TOPORS:-2.77012117974 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10188-103D8;search_select_hide=table117:FF:10188-103D8 | |||
}} | }} | ||
Latest revision as of 12:26, 3 June 2020
| Name: | cerebral meninges, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12840 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12840
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12840
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0317 |
| 10 | 10 | 0.0241 |
| 100 | 100 | 0.288 |
| 101 | 101 | 0.955 |
| 102 | 102 | 0.901 |
| 103 | 103 | 0.244 |
| 104 | 104 | 0.175 |
| 105 | 105 | 0.171 |
| 106 | 106 | 0.119 |
| 107 | 107 | 0.217 |
| 108 | 108 | 0.871 |
| 109 | 109 | 0.0144 |
| 11 | 11 | 0.0143 |
| 110 | 110 | 0.038 |
| 111 | 111 | 0.0331 |
| 112 | 112 | 0.628 |
| 113 | 113 | 0.85 |
| 114 | 114 | 0.066 |
| 115 | 115 | 0.71 |
| 116 | 116 | 0.285 |
| 117 | 117 | 0.00642 |
| 118 | 118 | 0.0862 |
| 119 | 119 | 0.114 |
| 12 | 12 | 0.705 |
| 120 | 120 | 0.129 |
| 121 | 121 | 0.41 |
| 122 | 122 | 0.575 |
| 123 | 123 | 0.0772 |
| 124 | 124 | 0.19 |
| 125 | 125 | 0.303 |
| 126 | 126 | 0.0728 |
| 127 | 127 | 0.311 |
| 128 | 128 | 0.308 |
| 129 | 129 | 0.488 |
| 13 | 13 | 0.00191 |
| 130 | 130 | 0.611 |
| 131 | 131 | 0.0476 |
| 132 | 132 | 0.84 |
| 133 | 133 | 4.30079e-4 |
| 134 | 134 | 0.405 |
| 135 | 135 | 0.435 |
| 136 | 136 | 0.0549 |
| 137 | 137 | 0.642 |
| 138 | 138 | 0.712 |
| 139 | 139 | 0.141 |
| 14 | 14 | 0.696 |
| 140 | 140 | 0.433 |
| 141 | 141 | 0.364 |
| 142 | 142 | 0.97 |
| 143 | 143 | 0.0298 |
| 144 | 144 | 0.877 |
| 145 | 145 | 0.0655 |
| 146 | 146 | 0.454 |
| 147 | 147 | 0.961 |
| 148 | 148 | 0.117 |
| 149 | 149 | 0.344 |
| 15 | 15 | 0.0726 |
| 150 | 150 | 0.208 |
| 151 | 151 | 0.552 |
| 152 | 152 | 0.182 |
| 153 | 153 | 0.808 |
| 154 | 154 | 0.857 |
| 155 | 155 | 0.242 |
| 156 | 156 | 0.39 |
| 157 | 157 | 0.555 |
| 158 | 158 | 0.305 |
| 159 | 159 | 0.809 |
| 16 | 16 | 0.105 |
| 160 | 160 | 0.21 |
| 161 | 161 | 0.178 |
| 162 | 162 | 0.986 |
| 163 | 163 | 0.896 |
| 164 | 164 | 0.0166 |
| 165 | 165 | 0.0735 |
| 166 | 166 | 0.763 |
| 167 | 167 | 0.227 |
| 168 | 168 | 0.533 |
| 169 | 169 | 0.0071 |
| 17 | 17 | 0.182 |
| 18 | 18 | 0.315 |
| 19 | 19 | 0.211 |
| 2 | 2 | 0.98 |
| 20 | 20 | 0.101 |
| 21 | 21 | 0.0404 |
| 22 | 22 | 0.24 |
| 23 | 23 | 0.505 |
| 24 | 24 | 0.103 |
| 25 | 25 | 0.514 |
| 26 | 26 | 6.89302e-5 |
| 27 | 27 | 0.977 |
| 28 | 28 | 0.633 |
| 29 | 29 | 0.0107 |
| 3 | 3 | 0.0193 |
| 30 | 30 | 0.39 |
| 31 | 31 | 0.891 |
| 32 | 32 | 0.08 |
| 33 | 33 | 0.0856 |
| 34 | 34 | 0.744 |
| 35 | 35 | 0.495 |
| 36 | 36 | 0.048 |
| 37 | 37 | 0.0413 |
| 38 | 38 | 0.286 |
| 39 | 39 | 0.371 |
| 4 | 4 | 0.613 |
| 40 | 40 | 0.0231 |
| 41 | 41 | 0.472 |
| 42 | 42 | 0.136 |
| 43 | 43 | 0.0969 |
| 44 | 44 | 0.239 |
| 45 | 45 | 0.877 |
| 46 | 46 | 0.0626 |
| 47 | 47 | 0.0332 |
| 48 | 48 | 0.0309 |
| 49 | 49 | 0.0869 |
| 5 | 5 | 0.316 |
| 50 | 50 | 0.349 |
| 51 | 51 | 0.494 |
| 52 | 52 | 0.775 |
| 53 | 53 | 0.676 |
| 54 | 54 | 0.376 |
| 55 | 55 | 0.354 |
| 56 | 56 | 0.416 |
| 57 | 57 | 0.176 |
| 58 | 58 | 0.338 |
| 59 | 59 | 0.195 |
| 6 | 6 | 0.599 |
| 60 | 60 | 0.127 |
| 61 | 61 | 0.0516 |
| 62 | 62 | 0.202 |
| 63 | 63 | 0.131 |
| 64 | 64 | 0.22 |
| 65 | 65 | 0.298 |
| 66 | 66 | 0.21 |
| 67 | 67 | 0.279 |
| 68 | 68 | 0.134 |
| 69 | 69 | 0.479 |
| 7 | 7 | 0.0596 |
| 70 | 70 | 0.0264 |
| 71 | 71 | 0.00867 |
| 72 | 72 | 0.535 |
| 73 | 73 | 0.0512 |
| 74 | 74 | 0.944 |
| 75 | 75 | 0.0228 |
| 76 | 76 | 0.323 |
| 77 | 77 | 0.328 |
| 78 | 78 | 0.00179 |
| 79 | 79 | 0.1 |
| 8 | 8 | 0.0838 |
| 80 | 80 | 0.923 |
| 81 | 81 | 0.621 |
| 82 | 82 | 0.546 |
| 83 | 83 | 0.383 |
| 84 | 84 | 0.766 |
| 85 | 85 | 0.31 |
| 86 | 86 | 0.231 |
| 87 | 87 | 0.031 |
| 88 | 88 | 0.849 |
| 89 | 89 | 0.686 |
| 9 | 9 | 0.657 |
| 90 | 90 | 0.047 |
| 91 | 91 | 0.337 |
| 92 | 92 | 0.459 |
| 93 | 93 | 0.788 |
| 94 | 94 | 0.0511 |
| 95 | 95 | 0.0329 |
| 96 | 96 | 0.689 |
| 97 | 97 | 0.866 |
| 98 | 98 | 0.272 |
| 99 | 99 | 0.677 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12840
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002360 (meninx)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000094 (membrane organ)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0010743 (meningeal cluster)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010188 (human cerebral meninges - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
