FF:10038-101F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004766 | ||
|accession_numbers=CAGE;DRX008688;DRR009560;DRZ000985;DRZ002370;DRZ012335;DRZ013720 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010038 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520pool1.CNhs10645.10038-101F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10038-101F2 | |id=FF:10038-101F2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010038 | ||
|is_obsolete= | |||
|library_id=CNhs10645 | |||
|library_id_phase_based=2:CNhs10645 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10038 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10038 | |||
|name=medulla oblongata, adult, pool1 | |name=medulla oblongata, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10645,LSID658,release008,COMPLETED | |profile_hcage=CNhs10645,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636562 | |rna_catalog_number=Cat:636562 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.30197038771149e-294!GO:0005737;cytoplasm;8.27770454804814e-165!GO:0044444;cytoplasmic part;6.43326170954635e-106!GO:0043226;organelle;3.49465203558479e-88!GO:0043229;intracellular organelle;7.35631038192805e-88!GO:0043227;membrane-bound organelle;1.1493045964696e-80!GO:0043231;intracellular membrane-bound organelle;1.42023803028642e-80!GO:0005515;protein binding;1.30593682122405e-74!GO:0044422;organelle part;3.40061519487983e-57!GO:0044446;intracellular organelle part;3.11409532874124e-56!GO:0032991;macromolecular complex;7.40049364454978e-50!GO:0016043;cellular component organization and biogenesis;5.25871843149113e-47!GO:0033036;macromolecule localization;2.72846349965365e-38!GO:0015031;protein transport;3.0683159296589e-37!GO:0031090;organelle membrane;7.33664379900303e-37!GO:0005739;mitochondrion;1.51650676443177e-36!GO:0008104;protein localization;2.79365117665559e-35!GO:0045184;establishment of protein localization;1.27462334985336e-34!GO:0003723;RNA binding;7.26662473649728e-33!GO:0030529;ribonucleoprotein complex;1.53412184840552e-31!GO:0046907;intracellular transport;5.80966071661015e-31!GO:0043234;protein complex;1.18110982185048e-28!GO:0016192;vesicle-mediated transport;1.54365838043521e-28!GO:0051641;cellular localization;4.46131809841619e-27!GO:0051649;establishment of cellular localization;5.07282309559731e-27!GO:0044429;mitochondrial part;1.25635698024843e-26!GO:0043233;organelle lumen;1.42027444081999e-26!GO:0031974;membrane-enclosed lumen;1.42027444081999e-26!GO:0031975;envelope;1.00228487291633e-24!GO:0031967;organelle envelope;1.50986114882077e-24!GO:0019538;protein metabolic process;3.64692270118e-24!GO:0044238;primary metabolic process;5.37678369504733e-24!GO:0044428;nuclear part;1.63051998592083e-23!GO:0005829;cytosol;3.97406075394871e-23!GO:0006886;intracellular protein transport;1.03387134809006e-22!GO:0044237;cellular metabolic process;6.8002080444353e-22!GO:0016071;mRNA metabolic process;6.8002080444353e-22!GO:0031982;vesicle;5.17477261464289e-21!GO:0044260;cellular macromolecule metabolic process;1.57414927233014e-20!GO:0031410;cytoplasmic vesicle;2.57429825939849e-20!GO:0031988;membrane-bound vesicle;5.755036820021e-20!GO:0044267;cellular protein metabolic process;2.13362863010208e-19!GO:0005794;Golgi apparatus;2.38936432284431e-19!GO:0016023;cytoplasmic membrane-bound vesicle;2.39861238094813e-19!GO:0008380;RNA splicing;4.51623639018711e-19!GO:0005740;mitochondrial envelope;4.71078518513635e-19!GO:0009058;biosynthetic process;4.88936237177948e-19!GO:0031966;mitochondrial membrane;1.1067452941243e-18!GO:0006396;RNA processing;3.5207365554092e-18!GO:0043170;macromolecule metabolic process;5.27273990184316e-18!GO:0006119;oxidative phosphorylation;6.28522614137955e-18!GO:0006397;mRNA processing;7.31603835861189e-18!GO:0065003;macromolecular complex assembly;1.09525966290177e-17!GO:0006996;organelle organization and biogenesis;2.405270806336e-17!GO:0019866;organelle inner membrane;1.15925867160788e-16!GO:0005840;ribosome;1.49130608162642e-16!GO:0048770;pigment granule;2.04786959782641e-16!GO:0042470;melanosome;2.04786959782641e-16!GO:0005743;mitochondrial inner membrane;4.99057807307747e-16!GO:0022607;cellular component assembly;5.41672868752596e-16!GO:0006412;translation;5.6890240750006e-16!GO:0000166;nucleotide binding;8.91969257121867e-15!GO:0012505;endomembrane system;1.08853655866552e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.22714113299215e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.4264259765721e-14!GO:0016462;pyrophosphatase activity;1.68506155740464e-14!GO:0044249;cellular biosynthetic process;3.37837763595143e-14!GO:0005634;nucleus;5.07069176140361e-14!GO:0031981;nuclear lumen;5.07069176140361e-14!GO:0017111;nucleoside-triphosphatase activity;5.09301088901565e-14!GO:0009059;macromolecule biosynthetic process;7.48503808968399e-14!GO:0008092;cytoskeletal protein binding;8.82035686018681e-14!GO:0005681;spliceosome;4.77839715991386e-13!GO:0003735;structural constituent of ribosome;8.1890890493634e-13!GO:0005783;endoplasmic reticulum;1.35259795031998e-12!GO:0016874;ligase activity;2.90039303786578e-12!GO:0005746;mitochondrial respiratory chain;7.36040800710202e-12!GO:0016044;membrane organization and biogenesis;9.62188649629505e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.56166564370169e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.59068752979133e-11!GO:0003954;NADH dehydrogenase activity;1.59068752979133e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.59068752979133e-11!GO:0048193;Golgi vesicle transport;1.98888984761443e-11!GO:0044455;mitochondrial membrane part;2.35101234102819e-11!GO:0006810;transport;3.19722813596989e-11!GO:0051179;localization;4.85637305201716e-11!GO:0006512;ubiquitin cycle;4.86021499359761e-11!GO:0032553;ribonucleotide binding;6.31435782742361e-11!GO:0032555;purine ribonucleotide binding;6.31435782742361e-11!GO:0007010;cytoskeleton organization and biogenesis;6.56797506751763e-11!GO:0003924;GTPase activity;8.67204565469887e-11!GO:0033279;ribosomal subunit;9.3215356270944e-11!GO:0008134;transcription factor binding;1.02966765025497e-10!GO:0006457;protein folding;1.07936897454086e-10!GO:0007264;small GTPase mediated signal transduction;1.13742346345947e-10!GO:0005768;endosome;1.32414939659728e-10!GO:0030036;actin cytoskeleton organization and biogenesis;1.50037343986515e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.11178269158482e-10!GO:0044265;cellular macromolecule catabolic process;2.21970265999453e-10!GO:0017076;purine nucleotide binding;2.23263321712458e-10!GO:0030695;GTPase regulator activity;3.40272737964909e-10!GO:0006461;protein complex assembly;3.61614276020854e-10!GO:0019941;modification-dependent protein catabolic process;3.71249150080083e-10!GO:0043632;modification-dependent macromolecule catabolic process;3.71249150080083e-10!GO:0031980;mitochondrial lumen;3.71249150080083e-10!GO:0005759;mitochondrial matrix;3.71249150080083e-10!GO:0044257;cellular protein catabolic process;4.20332371132316e-10!GO:0045045;secretory pathway;4.34338141674254e-10!GO:0006511;ubiquitin-dependent protein catabolic process;4.37043504193872e-10!GO:0030964;NADH dehydrogenase complex (quinone);6.05939808462987e-10!GO:0045271;respiratory chain complex I;6.05939808462987e-10!GO:0005747;mitochondrial respiratory chain complex I;6.05939808462987e-10!GO:0006605;protein targeting;6.25174350514549e-10!GO:0008565;protein transporter activity;7.37949267707879e-10!GO:0042775;organelle ATP synthesis coupled electron transport;7.46567158199658e-10!GO:0042773;ATP synthesis coupled electron transport;7.46567158199658e-10!GO:0043412;biopolymer modification;1.1715021420152e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.2621845345053e-09!GO:0006464;protein modification process;1.44812894313437e-09!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.4689864224343e-09!GO:0030029;actin filament-based process;1.52275065560036e-09!GO:0044248;cellular catabolic process;1.65951902854842e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.79696298223171e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24584821881308e-09!GO:0005654;nucleoplasm;2.34564105602479e-09!GO:0022618;protein-RNA complex assembly;2.73064153077277e-09!GO:0043687;post-translational protein modification;3.05051185412326e-09!GO:0005525;GTP binding;3.16036625987763e-09!GO:0051234;establishment of localization;3.92597007494394e-09!GO:0006897;endocytosis;5.44536403640655e-09!GO:0010324;membrane invagination;5.44536403640655e-09!GO:0051082;unfolded protein binding;6.30794390425189e-09!GO:0044445;cytosolic part;1.17118798501941e-08!GO:0019829;cation-transporting ATPase activity;1.17578521330875e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.17578521330875e-08!GO:0008135;translation factor activity, nucleic acid binding;1.29995551697128e-08!GO:0048523;negative regulation of cellular process;1.52147415719026e-08!GO:0005083;small GTPase regulator activity;1.60477931458752e-08!GO:0044451;nucleoplasm part;1.75822616312268e-08!GO:0003779;actin binding;2.08202061921618e-08!GO:0044431;Golgi apparatus part;2.63954272256932e-08!GO:0030135;coated vesicle;3.87931297709376e-08!GO:0051186;cofactor metabolic process;3.87931297709376e-08!GO:0031252;leading edge;4.55457620680212e-08!GO:0043228;non-membrane-bound organelle;4.61772043088181e-08!GO:0043232;intracellular non-membrane-bound organelle;4.61772043088181e-08!GO:0043285;biopolymer catabolic process;4.77177833548213e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.78991636964818e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.82002741764983e-08!GO:0006793;phosphorus metabolic process;8.25866036008279e-08!GO:0006796;phosphate metabolic process;8.25866036008279e-08!GO:0030163;protein catabolic process;9.23562070696255e-08!GO:0032561;guanyl ribonucleotide binding;9.31198100076924e-08!GO:0019001;guanyl nucleotide binding;9.31198100076924e-08!GO:0043283;biopolymer metabolic process;9.81382774727423e-08!GO:0019899;enzyme binding;1.04287225735398e-07!GO:0044432;endoplasmic reticulum part;1.08583969727655e-07!GO:0032940;secretion by cell;1.68973519712477e-07!GO:0015986;ATP synthesis coupled proton transport;2.23409113857283e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.23409113857283e-07!GO:0009057;macromolecule catabolic process;2.23409113857283e-07!GO:0005773;vacuole;2.24748274905531e-07!GO:0048519;negative regulation of biological process;3.33435940089181e-07!GO:0048471;perinuclear region of cytoplasm;3.4314225756808e-07!GO:0048475;coated membrane;3.4859446809217e-07!GO:0030117;membrane coat;3.4859446809217e-07!GO:0019787;small conjugating protein ligase activity;5.66094022390081e-07!GO:0006913;nucleocytoplasmic transport;5.93599416305372e-07!GO:0008639;small protein conjugating enzyme activity;6.07796968427856e-07!GO:0005905;coated pit;6.40259439891664e-07!GO:0015935;small ribosomal subunit;6.72831879401703e-07!GO:0044440;endosomal part;6.72831879401703e-07!GO:0010008;endosome membrane;6.72831879401703e-07!GO:0004842;ubiquitin-protein ligase activity;8.26801631961895e-07!GO:0006446;regulation of translational initiation;8.91906517404721e-07!GO:0009060;aerobic respiration;8.97578821173307e-07!GO:0051169;nuclear transport;1.04028401474573e-06!GO:0045333;cellular respiration;1.12991006157814e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.22309377923849e-06!GO:0000375;RNA splicing, via transesterification reactions;1.22309377923849e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.22309377923849e-06!GO:0005635;nuclear envelope;1.44418922288494e-06!GO:0015631;tubulin binding;1.64498951443197e-06!GO:0016881;acid-amino acid ligase activity;1.81749427460015e-06!GO:0016604;nuclear body;1.93932576615016e-06!GO:0000323;lytic vacuole;1.95178514460926e-06!GO:0005764;lysosome;1.95178514460926e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.07484730854033e-06!GO:0007242;intracellular signaling cascade;2.3231147253747e-06!GO:0046034;ATP metabolic process;2.76280179804287e-06!GO:0006413;translational initiation;2.97163240094578e-06!GO:0051246;regulation of protein metabolic process;2.97163309381337e-06!GO:0016607;nuclear speck;2.98725262470561e-06!GO:0008047;enzyme activator activity;3.0740147429877e-06!GO:0003743;translation initiation factor activity;3.12990738326283e-06!GO:0005770;late endosome;3.26805873962811e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.66525068310063e-06!GO:0031965;nuclear membrane;4.08351313218242e-06!GO:0006163;purine nucleotide metabolic process;4.1013778558526e-06!GO:0010467;gene expression;4.1013778558526e-06!GO:0005789;endoplasmic reticulum membrane;4.23234208937485e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.25011001124037e-06!GO:0006732;coenzyme metabolic process;4.58189618745838e-06!GO:0009150;purine ribonucleotide metabolic process;5.07585466391869e-06!GO:0000139;Golgi membrane;5.11591636501657e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.66663607979202e-06!GO:0009056;catabolic process;6.83686066964037e-06!GO:0005769;early endosome;7.19348924238676e-06!GO:0032559;adenyl ribonucleotide binding;8.17872604190984e-06!GO:0006099;tricarboxylic acid cycle;8.79370386116537e-06!GO:0046356;acetyl-CoA catabolic process;8.79370386116537e-06!GO:0007265;Ras protein signal transduction;9.56197589485659e-06!GO:0000902;cell morphogenesis;9.80404187386161e-06!GO:0032989;cellular structure morphogenesis;9.80404187386161e-06!GO:0007399;nervous system development;9.86747241009992e-06!GO:0003712;transcription cofactor activity;9.88255868665004e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.00476598157981e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.00476598157981e-05!GO:0006754;ATP biosynthetic process;1.00699359061034e-05!GO:0006753;nucleoside phosphate metabolic process;1.00699359061034e-05!GO:0006164;purine nucleotide biosynthetic process;1.05452168097791e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.27901170248516e-05!GO:0005096;GTPase activator activity;1.28002450664783e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.28002450664783e-05!GO:0009259;ribonucleotide metabolic process;1.29522129410912e-05!GO:0005524;ATP binding;1.42337967017394e-05!GO:0009141;nucleoside triphosphate metabolic process;1.51829214807922e-05!GO:0009109;coenzyme catabolic process;1.72118050411355e-05!GO:0016310;phosphorylation;1.89675239898846e-05!GO:0017038;protein import;1.89884775644002e-05!GO:0015630;microtubule cytoskeleton;1.93231818523186e-05!GO:0009055;electron carrier activity;1.95286320311771e-05!GO:0042623;ATPase activity, coupled;2.20885046487374e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.27032823588183e-05!GO:0030554;adenyl nucleotide binding;2.34990856595006e-05!GO:0016887;ATPase activity;2.62201062323063e-05!GO:0051128;regulation of cellular component organization and biogenesis;2.93735040791432e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.02235037870017e-05!GO:0008219;cell death;3.12515639877575e-05!GO:0016265;death;3.12515639877575e-05!GO:0012501;programmed cell death;3.1967180273922e-05!GO:0006915;apoptosis;3.35888787795808e-05!GO:0008654;phospholipid biosynthetic process;3.35888787795808e-05!GO:0005761;mitochondrial ribosome;3.39008267591457e-05!GO:0000313;organellar ribosome;3.39008267591457e-05!GO:0051187;cofactor catabolic process;3.42345554102114e-05!GO:0030120;vesicle coat;3.46688446759818e-05!GO:0030662;coated vesicle membrane;3.46688446759818e-05!GO:0006084;acetyl-CoA metabolic process;3.79139896955536e-05!GO:0045259;proton-transporting ATP synthase complex;4.16184767300317e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.53788086200499e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.53788086200499e-05!GO:0030136;clathrin-coated vesicle;4.78702242642054e-05!GO:0043005;neuron projection;5.2269480570535e-05!GO:0009260;ribonucleotide biosynthetic process;5.78079099530277e-05!GO:0009142;nucleoside triphosphate biosynthetic process;5.89000962829147e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.89000962829147e-05!GO:0005798;Golgi-associated vesicle;6.25376797625941e-05!GO:0008287;protein serine/threonine phosphatase complex;6.93764239640975e-05!GO:0006643;membrane lipid metabolic process;6.99665898886673e-05!GO:0005730;nucleolus;7.40674771567588e-05!GO:0005793;ER-Golgi intermediate compartment;8.13980645078001e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.13980645078001e-05!GO:0005874;microtubule;8.18851994817434e-05!GO:0030027;lamellipodium;0.000107675592280274!GO:0015934;large ribosomal subunit;0.000124096694861314!GO:0030118;clathrin coat;0.000126586117469317!GO:0030133;transport vesicle;0.000126586117469317!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000126586117469317!GO:0015399;primary active transmembrane transporter activity;0.000126586117469317!GO:0006888;ER to Golgi vesicle-mediated transport;0.000132127692609867!GO:0006613;cotranslational protein targeting to membrane;0.000133360570865522!GO:0015980;energy derivation by oxidation of organic compounds;0.000134594784844299!GO:0046467;membrane lipid biosynthetic process;0.000139817331032912!GO:0009966;regulation of signal transduction;0.000151009212365618!GO:0008017;microtubule binding;0.000168297244858833!GO:0016126;sterol biosynthetic process;0.000187793183870516!GO:0045786;negative regulation of progression through cell cycle;0.000193690295382605!GO:0043069;negative regulation of programmed cell death;0.000213947022347106!GO:0019717;synaptosome;0.000231254809849772!GO:0043492;ATPase activity, coupled to movement of substances;0.000244200656090739!GO:0008610;lipid biosynthetic process;0.000244200656090739!GO:0016197;endosome transport;0.000248004608989226!GO:0016564;transcription repressor activity;0.000265241580009539!GO:0043066;negative regulation of apoptosis;0.000282198051942202!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000303301389098523!GO:0006650;glycerophospholipid metabolic process;0.000321837280369753!GO:0016791;phosphoric monoester hydrolase activity;0.000323486619909861!GO:0022890;inorganic cation transmembrane transporter activity;0.000335511884691567!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000372038693559144!GO:0006366;transcription from RNA polymerase II promoter;0.000382126038117294!GO:0051056;regulation of small GTPase mediated signal transduction;0.000402848824221319!GO:0006606;protein import into nucleus;0.000406952872282094!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000412117796466055!GO:0001726;ruffle;0.000431778138293114!GO:0044453;nuclear membrane part;0.000449646985173056!GO:0051170;nuclear import;0.000450735371244632!GO:0001666;response to hypoxia;0.000453053268225756!GO:0015629;actin cytoskeleton;0.000462079606183603!GO:0008154;actin polymerization and/or depolymerization;0.000467965229307833!GO:0006752;group transfer coenzyme metabolic process;0.000474252671985254!GO:0048468;cell development;0.000565593507097134!GO:0005741;mitochondrial outer membrane;0.000582437344458297!GO:0003714;transcription corepressor activity;0.000599726748075924!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000611650674070326!GO:0006916;anti-apoptosis;0.000616594768842061!GO:0007272;ensheathment of neurons;0.000630011146180408!GO:0008366;axon ensheathment;0.000630011146180408!GO:0031901;early endosome membrane;0.000742326515409099!GO:0001508;regulation of action potential;0.000788687155592836!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000833508972599112!GO:0006403;RNA localization;0.00084908599496911!GO:0004721;phosphoprotein phosphatase activity;0.000891162479138324!GO:0005085;guanyl-nucleotide exchange factor activity;0.000908421926206696!GO:0005643;nuclear pore;0.000909887842827225!GO:0019867;outer membrane;0.000924085019446144!GO:0007243;protein kinase cascade;0.00097410009419269!GO:0030867;rough endoplasmic reticulum membrane;0.00101127548153083!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00101678655346358!GO:0031968;organelle outer membrane;0.00101678655346358!GO:0050657;nucleic acid transport;0.00102258555694873!GO:0051236;establishment of RNA localization;0.00102258555694873!GO:0050658;RNA transport;0.00102258555694873!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00106631046935303!GO:0031902;late endosome membrane;0.00108176950687842!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0011037217098825!GO:0000245;spliceosome assembly;0.00110918421855991!GO:0009892;negative regulation of metabolic process;0.00113491590490203!GO:0005938;cell cortex;0.00117059680655097!GO:0043623;cellular protein complex assembly;0.00118004306575704!GO:0005791;rough endoplasmic reticulum;0.00126780794156668!GO:0032446;protein modification by small protein conjugation;0.00128399160343227!GO:0050767;regulation of neurogenesis;0.00132121632768077!GO:0000151;ubiquitin ligase complex;0.00143684150523192!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0014405301334849!GO:0051188;cofactor biosynthetic process;0.0014405301334849!GO:0016311;dephosphorylation;0.00144247062551152!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00150591972183886!GO:0008361;regulation of cell size;0.00161905081900324!GO:0042802;identical protein binding;0.00170495158449355!GO:0003729;mRNA binding;0.00171966114904605!GO:0050789;regulation of biological process;0.00178427836475772!GO:0016567;protein ubiquitination;0.00195852523872073!GO:0005839;proteasome core complex (sensu Eukaryota);0.00199376826307192!GO:0007019;microtubule depolymerization;0.00200340294992407!GO:0005774;vacuolar membrane;0.00205909135429573!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0020889563087411!GO:0004812;aminoacyl-tRNA ligase activity;0.0020889563087411!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0020889563087411!GO:0016049;cell growth;0.0021144350335704!GO:0000159;protein phosphatase type 2A complex;0.00213036977037499!GO:0003724;RNA helicase activity;0.0022199984114384!GO:0006644;phospholipid metabolic process;0.00236208334352243!GO:0043209;myelin sheath;0.00238776156851889!GO:0046578;regulation of Ras protein signal transduction;0.00250520251616293!GO:0044255;cellular lipid metabolic process;0.00265296770179477!GO:0007266;Rho protein signal transduction;0.00274846425986004!GO:0012506;vesicle membrane;0.00275533098224184!GO:0008026;ATP-dependent helicase activity;0.00275533098224184!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00282243838450863!GO:0019902;phosphatase binding;0.00286674799887522!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00291145152984775!GO:0031072;heat shock protein binding;0.00293916003990342!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00308567000823224!GO:0043038;amino acid activation;0.00310978894050735!GO:0006418;tRNA aminoacylation for protein translation;0.00310978894050735!GO:0043039;tRNA aminoacylation;0.00310978894050735!GO:0051087;chaperone binding;0.00314570939078435!GO:0008601;protein phosphatase type 2A regulator activity;0.00321010219572416!GO:0006607;NLS-bearing substrate import into nucleus;0.00321010219572416!GO:0006665;sphingolipid metabolic process;0.00325284488837106!GO:0030426;growth cone;0.00326583723102552!GO:0006612;protein targeting to membrane;0.00335413813588502!GO:0016050;vesicle organization and biogenesis;0.0034106481592973!GO:0006470;protein amino acid dephosphorylation;0.00353032094385494!GO:0006695;cholesterol biosynthetic process;0.00362446125708054!GO:0005875;microtubule associated complex;0.00371087033262365!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00371087033262365!GO:0030384;phosphoinositide metabolic process;0.00372841622200903!GO:0030427;site of polarized growth;0.00375738547082003!GO:0006891;intra-Golgi vesicle-mediated transport;0.00384962755839531!GO:0051920;peroxiredoxin activity;0.0039810112297927!GO:0009117;nucleotide metabolic process;0.0040468023977164!GO:0051261;protein depolymerization;0.0041623011120611!GO:0016568;chromatin modification;0.00423320150326755!GO:0019208;phosphatase regulator activity;0.00432208920449652!GO:0048487;beta-tubulin binding;0.00446465832585678!GO:0005765;lysosomal membrane;0.00460801105381509!GO:0030425;dendrite;0.00476335667263343!GO:0044448;cell cortex part;0.00479310282724307!GO:0050811;GABA receptor binding;0.00479310282724307!GO:0046474;glycerophospholipid biosynthetic process;0.00500367792307292!GO:0008286;insulin receptor signaling pathway;0.00527924786772701!GO:0019904;protein domain specific binding;0.00527924786772701!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00527924786772701!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00527924786772701!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00527924786772701!GO:0044433;cytoplasmic vesicle part;0.00534202290813076!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00558060305766022!GO:0030041;actin filament polymerization;0.00563875688737556!GO:0031324;negative regulation of cellular metabolic process;0.0059846635879807!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0059846635879807!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00599776186495382!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00600013931232953!GO:0031114;regulation of microtubule depolymerization;0.00608404810256718!GO:0007026;negative regulation of microtubule depolymerization;0.00608404810256718!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00608404810256718!GO:0004667;prostaglandin-D synthase activity;0.00608404810256718!GO:0050802;circadian sleep/wake cycle, sleep;0.00608404810256718!GO:0022410;circadian sleep/wake cycle process;0.00608404810256718!GO:0042749;regulation of circadian sleep/wake cycle;0.00608404810256718!GO:0022406;membrane docking;0.00616457787613173!GO:0048278;vesicle docking;0.00616457787613173!GO:0006904;vesicle docking during exocytosis;0.00617664151805356!GO:0046488;phosphatidylinositol metabolic process;0.00639560942582892!GO:0006629;lipid metabolic process;0.00693448493363932!GO:0016481;negative regulation of transcription;0.00712799130739594!GO:0004386;helicase activity;0.00718381276786966!GO:0003713;transcription coactivator activity;0.00737805402716643!GO:0043566;structure-specific DNA binding;0.00745788789302823!GO:0009108;coenzyme biosynthetic process;0.00775635430234347!GO:0030132;clathrin coat of coated pit;0.00790375326742481!GO:0005099;Ras GTPase activator activity;0.00795693206639195!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00796902331762363!GO:0004298;threonine endopeptidase activity;0.0086449151041097!GO:0051287;NAD binding;0.00878493309672712!GO:0003697;single-stranded DNA binding;0.00883739918711784!GO:0044437;vacuolar part;0.00888331779825569!GO:0051028;mRNA transport;0.00925300973879126!GO:0004722;protein serine/threonine phosphatase activity;0.00926785439963615!GO:0006892;post-Golgi vesicle-mediated transport;0.00953519308499575!GO:0033673;negative regulation of kinase activity;0.00953716449367883!GO:0006469;negative regulation of protein kinase activity;0.00953716449367883!GO:0051168;nuclear export;0.00955184614107614!GO:0008186;RNA-dependent ATPase activity;0.00966011953430776!GO:0006402;mRNA catabolic process;0.0100081649552424!GO:0005100;Rho GTPase activator activity;0.0101196995355868!GO:0065009;regulation of a molecular function;0.010184783879965!GO:0050794;regulation of cellular process;0.0101858284744928!GO:0005869;dynactin complex;0.0101924966216164!GO:0042552;myelination;0.0102438552914082!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0107244477064745!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.010936806825463!GO:0019887;protein kinase regulator activity;0.0112155996876189!GO:0065002;intracellular protein transport across a membrane;0.0115469167570902!GO:0030659;cytoplasmic vesicle membrane;0.0116634167469749!GO:0008250;oligosaccharyl transferase complex;0.0118356613225907!GO:0048500;signal recognition particle;0.0118801063673316!GO:0043087;regulation of GTPase activity;0.0118801063673316!GO:0051427;hormone receptor binding;0.0122813699488459!GO:0051789;response to protein stimulus;0.0122813699488459!GO:0006986;response to unfolded protein;0.0122813699488459!GO:0030532;small nuclear ribonucleoprotein complex;0.0122949338407733!GO:0006672;ceramide metabolic process;0.0128257344440632!GO:0005885;Arp2/3 protein complex;0.013033444769836!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.013070405954208!GO:0043067;regulation of programmed cell death;0.0131619751616682!GO:0035035;histone acetyltransferase binding;0.0133142353137541!GO:0008139;nuclear localization sequence binding;0.0133142353137541!GO:0042981;regulation of apoptosis;0.0133929092066107!GO:0044262;cellular carbohydrate metabolic process;0.0135023904718729!GO:0045892;negative regulation of transcription, DNA-dependent;0.0135377434912014!GO:0019888;protein phosphatase regulator activity;0.0136546718778954!GO:0048489;synaptic vesicle transport;0.0144878492363743!GO:0006414;translational elongation;0.0151282066264815!GO:0019752;carboxylic acid metabolic process;0.0154030855722471!GO:0050435;beta-amyloid metabolic process;0.0154224580884377!GO:0005048;signal sequence binding;0.0154224580884377!GO:0030658;transport vesicle membrane;0.0155720552186277!GO:0030137;COPI-coated vesicle;0.0155720552186277!GO:0042578;phosphoric ester hydrolase activity;0.0155757869408523!GO:0051348;negative regulation of transferase activity;0.0155757869408523!GO:0051726;regulation of cell cycle;0.0155789855851867!GO:0016301;kinase activity;0.0156349760660075!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0156404759758935!GO:0003746;translation elongation factor activity;0.0156451553110575!GO:0006323;DNA packaging;0.0156451553110575!GO:0001558;regulation of cell growth;0.0162927177109878!GO:0046519;sphingoid metabolic process;0.0163679264125299!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.016402585178545!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.016512947031042!GO:0043021;ribonucleoprotein binding;0.0165712110942309!GO:0030119;AP-type membrane coat adaptor complex;0.0166008060924894!GO:0030131;clathrin adaptor complex;0.0168226148774908!GO:0046489;phosphoinositide biosynthetic process;0.0182538302925704!GO:0030424;axon;0.0185813727950403!GO:0031109;microtubule polymerization or depolymerization;0.0187533465728954!GO:0000059;protein import into nucleus, docking;0.0187730263169651!GO:0030660;Golgi-associated vesicle membrane;0.0189561133169178!GO:0000074;regulation of progression through cell cycle;0.0191810601791126!GO:0006082;organic acid metabolic process;0.019254201392648!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0197363850996449!GO:0055083;monovalent inorganic anion homeostasis;0.0197363850996449!GO:0055064;chloride ion homeostasis;0.0197363850996449!GO:0030644;cellular chloride ion homeostasis;0.0197363850996449!GO:0035257;nuclear hormone receptor binding;0.0200134749750057!GO:0005868;cytoplasmic dynein complex;0.0204195896288508!GO:0007017;microtubule-based process;0.0204603809055563!GO:0051248;negative regulation of protein metabolic process;0.0206485198234697!GO:0030139;endocytic vesicle;0.0215652064018578!GO:0030258;lipid modification;0.0221242806580993!GO:0033116;ER-Golgi intermediate compartment membrane;0.0221942272693052!GO:0043284;biopolymer biosynthetic process;0.0223768897538702!GO:0008021;synaptic vesicle;0.0225222406639861!GO:0004004;ATP-dependent RNA helicase activity;0.0228369978760903!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0231738605876775!GO:0033043;regulation of organelle organization and biogenesis;0.0231738605876775!GO:0006661;phosphatidylinositol biosynthetic process;0.0233696105713839!GO:0016408;C-acyltransferase activity;0.0233805214944802!GO:0006633;fatty acid biosynthetic process;0.0242056023367486!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0242152980499567!GO:0045047;protein targeting to ER;0.0242152980499567!GO:0046930;pore complex;0.024364626364967!GO:0048154;S100 beta binding;0.024364626364967!GO:0051540;metal cluster binding;0.0243862661224912!GO:0051536;iron-sulfur cluster binding;0.0243862661224912!GO:0065007;biological regulation;0.0244186902223557!GO:0030742;GTP-dependent protein binding;0.0245362052767663!GO:0031124;mRNA 3'-end processing;0.0247818787218948!GO:0051258;protein polymerization;0.0254057362736823!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0258657397420149!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0267096236884851!GO:0000062;acyl-CoA binding;0.0270500953870397!GO:0043488;regulation of mRNA stability;0.0274419885643863!GO:0043487;regulation of RNA stability;0.0274419885643863!GO:0006509;membrane protein ectodomain proteolysis;0.0274570833387585!GO:0033619;membrane protein proteolysis;0.0274570833387585!GO:0016740;transferase activity;0.0274904044777982!GO:0046839;phospholipid dephosphorylation;0.0276542378596795!GO:0004576;oligosaccharyl transferase activity;0.0276542378596795!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0276542378596795!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0276542378596795!GO:0030030;cell projection organization and biogenesis;0.0276542378596795!GO:0048858;cell projection morphogenesis;0.0276542378596795!GO:0032990;cell part morphogenesis;0.0276542378596795!GO:0022008;neurogenesis;0.0285345137867732!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0291565158804093!GO:0019198;transmembrane receptor protein phosphatase activity;0.0291565158804093!GO:0015682;ferric iron transport;0.0298034473150898!GO:0015091;ferric iron transmembrane transporter activity;0.0298034473150898!GO:0031643;positive regulation of myelination;0.0298034473150898!GO:0007034;vacuolar transport;0.0298222085741776!GO:0048699;generation of neurons;0.030526189362882!GO:0050839;cell adhesion molecule binding;0.0306918962683354!GO:0005092;GDP-dissociation inhibitor activity;0.0310316287392413!GO:0043086;negative regulation of catalytic activity;0.0310768594558614!GO:0005788;endoplasmic reticulum lumen;0.0311630610230723!GO:0016579;protein deubiquitination;0.0313446134615017!GO:0004680;casein kinase activity;0.0315839660074944!GO:0009165;nucleotide biosynthetic process;0.0316809898708253!GO:0030100;regulation of endocytosis;0.0316809898708253!GO:0008090;retrograde axon cargo transport;0.0320050796464421!GO:0033596;TSC1-TSC2 complex;0.0320050796464421!GO:0033693;neurofilament bundle assembly;0.0320050796464421!GO:0030663;COPI coated vesicle membrane;0.0324693184056705!GO:0030126;COPI vesicle coat;0.0324693184056705!GO:0004674;protein serine/threonine kinase activity;0.0332057981847393!GO:0019911;structural constituent of myelin sheath;0.033554214128874!GO:0019894;kinesin binding;0.033554214128874!GO:0006091;generation of precursor metabolites and energy;0.0338977841961643!GO:0006595;polyamine metabolic process;0.034148917584701!GO:0019903;protein phosphatase binding;0.034202415967822!GO:0009066;aspartate family amino acid metabolic process;0.0347453604139786!GO:0006979;response to oxidative stress;0.0350655924744973!GO:0006611;protein export from nucleus;0.0361527431912045!GO:0017166;vinculin binding;0.0361527431912045!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0372815965661248!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0372815965661248!GO:0008312;7S RNA binding;0.0373665766779304!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0375557246689909!GO:0032535;regulation of cellular component size;0.0375609852530028!GO:0030125;clathrin vesicle coat;0.0383836156552111!GO:0030665;clathrin coated vesicle membrane;0.0383836156552111!GO:0042982;amyloid precursor protein metabolic process;0.039562234480554!GO:0019207;kinase regulator activity;0.0399046875628565!GO:0000096;sulfur amino acid metabolic process;0.0407480168053165!GO:0005856;cytoskeleton;0.0418879592381096!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0434452678857552!GO:0030832;regulation of actin filament length;0.043477038911842!GO:0035258;steroid hormone receptor binding;0.0437746118202839!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0441286184601169!GO:0042995;cell projection;0.044857101032205!GO:0016491;oxidoreductase activity;0.0450255796910803!GO:0051252;regulation of RNA metabolic process;0.0451857807399944!GO:0001578;microtubule bundle formation;0.0456163478293309!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0460535108580875!GO:0032011;ARF protein signal transduction;0.0460535108580875!GO:0032012;regulation of ARF protein signal transduction;0.0460535108580875!GO:0051539;4 iron, 4 sulfur cluster binding;0.0464660276808213!GO:0030641;cellular hydrogen ion homeostasis;0.0468062847332287!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0474729072625514!GO:0007006;mitochondrial membrane organization and biogenesis;0.0475254853844811!GO:0000314;organellar small ribosomal subunit;0.0475254853844811!GO:0005763;mitochondrial small ribosomal subunit;0.0475254853844811 | |||
|sample_id=10038 | |sample_id=10038 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=medulla oblongata | |sample_tissue=medulla oblongata | ||
|top_motifs=REST:3.58415499794;SOX2:3.46244404202;NHLH1,2:3.41015246727;SOX5:3.39153558314;SOX{8,9,10}:3.35210255535;MYFfamily:3.2706128105;ZFP161:3.0580429424;RREB1:3.02487939223;NANOG:2.95431605146;HIC1:2.92470307892;MTF1:2.895495074;MED-1{core}:2.86976436904;MTE{core}:2.84652658467;NFIX:2.7676877533;ZBTB6:2.74267461608;PRRX1,2:2.73017886349;NKX3-2:2.61138444493;TFAP2B:2.61138237634;SMAD1..7,9:2.58663456567;RFX1:2.5739462341;ATF2:2.56815756673;EBF1:2.4936489516;GCM1,2:2.46741490466;TGIF1:2.44398424379;GTF2I:2.44233508303;PATZ1:2.37744407549;EP300:2.33046092024;JUN:2.2987894095;SOX17:2.29235110262;MAZ:2.28780084001;PAX5:2.22525605292;RFX2..5_RFXANK_RFXAP:2.21918313801;MZF1:2.21703519832;PRDM1:2.20993879805;EGR1..3:2.20236838113;SP1:2.19283879776;LMO2:2.03955708351;RBPJ:2.00326539259;ZNF423:1.99859080903;CUX2:1.98961392554;GFI1B:1.95923814265;TFAP2{A,C}:1.90997537784;POU6F1:1.85567522433;BREu{core}:1.76912463712;LEF1_TCF7_TCF7L1,2:1.72976616178;TLX1..3_NFIC{dimer}:1.55691735372;SREBF1,2:1.52782547665;HOX{A6,A7,B6,B7}:1.51747287525;KLF4:1.47320616979;MAFB:1.41866321716;XBP1:1.41753354761;HBP1_HMGB_SSRP1_UBTF:1.41061495338;FOX{D1,D2}:1.4072144379;FOXP3:1.38730560875;AHR_ARNT_ARNT2:1.35392709462;OCT4_SOX2{dimer}:1.34745985186;GATA4:1.34605089707;POU5F1:1.30412371673;GTF2A1,2:1.24381680572;RORA:1.23662664479;ZIC1..3:1.19798005938;TFDP1:1.17826629499;VSX1,2:1.16673614366;NKX2-3_NKX2-5:1.14233501837;AR:1.13962550917;MYBL2:1.12104154453;FOX{F1,F2,J1}:1.10814611329;DBP:1.05670072317;NR3C1:0.998294678153;XCPE1{core}:0.987653180773;NRF1:0.984855387267;PAX6:0.975117845816;PDX1:0.923241000531;FOXM1:0.914393155918;ESRRA:0.896802553824;STAT1,3:0.884271548373;FOXO1,3,4:0.835405631591;TFCP2:0.761635082658;ZNF238:0.741818853328;MYOD1:0.728328752178;ZNF143:0.673722276227;STAT2,4,6:0.672287386176;T:0.665143257914;GZF1:0.625318071459;IRF7:0.625130024952;HMX1:0.614552827391;MEF2{A,B,C,D}:0.605308691194;GFI1:0.59874027186;PBX1:0.583264525845;SPZ1:0.580739155677;ADNP_IRX_SIX_ZHX:0.526257398826;NFIL3:0.505402783343;TFAP4:0.464336719705;FOX{I1,J2}:0.463956412285;CREB1:0.453218466018;HAND1,2:0.40360308197;NR5A1,2:0.374290033989;NFY{A,B,C}:0.343471682015;BPTF:0.333052400437;ONECUT1,2:0.313583694541;HOX{A4,D4}:0.313149000964;ARID5B:0.289275500641;NFATC1..3:0.2814166976;FOXQ1:0.23856193396;FOXP1:0.238475304261;PAX2:0.228752696267;IRF1,2:0.216128077388;TBP:0.199409504034;ATF4:0.198937324716;NFE2L2:0.187787672851;CDC5L:0.165532116744;TLX2:0.148709477757;ZEB1:0.129349167988;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.127834358037;FOXN1:0.117221776473;TOPORS:0.08857388183;FOXA2:0.0806876198223;SRF:0.0499987863096;CRX:0.0244216103191;bHLH_family:0.0111404180859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00437207446018;ATF5_CREB3:-0.00489913700247;TBX4,5:-0.00723989527587;ZNF384:-0.0551272518252;HSF1,2:-0.0717769970342;ETS1,2:-0.0849209663344;POU3F1..4:-0.100721279227;ZNF148:-0.143403562249;NR1H4:-0.189070020044;ESR1:-0.219813863862;ALX4:-0.233063310658;HOXA9_MEIS1:-0.233273893374;IKZF1:-0.252337468544;NFE2:-0.252875025595;GATA6:-0.302264741663;HMGA1,2:-0.329784838562;SPI1:-0.343552115257;YY1:-0.34451883368;TP53:-0.361475135406;ATF6:-0.363001945731;SNAI1..3:-0.363437052403;PAX3,7:-0.399829757129;TEAD1:-0.403654990222;HNF1A:-0.423083934191;LHX3,4:-0.426826887382;CEBPA,B_DDIT3:-0.45365361893;NANOG{mouse}:-0.459876724859;SPIB:-0.467161703902;RXR{A,B,G}:-0.471358352235;HNF4A_NR2F1,2:-0.521664254796;FOXD3:-0.533439644552;NFE2L1:-0.564267389197;NKX6-1,2:-0.603332294592;IKZF2:-0.611531723702;HES1:-0.711611995634;TAL1_TCF{3,4,12}:-0.721716025571;PAX8:-0.778640301153;FOSL2:-0.803461116824;HLF:-0.803798401788;HIF1A:-0.853311018349;BACH2:-0.864410011729;GLI1..3:-0.871486327981;NFKB1_REL_RELA:-0.893597978827;DMAP1_NCOR{1,2}_SMARC:-0.896767542553;ELF1,2,4:-0.904258150044;ELK1,4_GABP{A,B1}:-0.931169937396;FOS_FOS{B,L1}_JUN{B,D}:-0.954850609313;RUNX1..3:-1.01652115817;POU1F1:-1.02603610691;POU2F1..3:-1.05161871728;UFEwm:-1.05601588329;PAX1,9:-1.15528178864;E2F1..5:-1.20356233528;PPARG:-1.2275104024;NKX3-1:-1.23902852528;PITX1..3:-1.25075002642;ALX1:-1.3019696105;NKX2-1,4:-1.3889518943;MYB:-1.42279868789;RXRA_VDR{dimer}:-1.44795979644;TEF:-1.59787639003;FOXL1:-1.70295170797;NR6A1:-1.70572976721;EN1,2:-1.77326551253;PAX4:-1.99947616148;EVI1:-2.07549256779;HOX{A5,B5}:-2.17264788732;ZBTB16:-2.34034874236;AIRE:-2.35447164693;NKX2-2,8:-2.53967771606;CDX1,2,4:-2.66159934993;STAT5{A,B}:-2.829037075 | |top_motifs=REST:3.58415499794;SOX2:3.46244404202;NHLH1,2:3.41015246727;SOX5:3.39153558314;SOX{8,9,10}:3.35210255535;MYFfamily:3.2706128105;ZFP161:3.0580429424;RREB1:3.02487939223;NANOG:2.95431605146;HIC1:2.92470307892;MTF1:2.895495074;MED-1{core}:2.86976436904;MTE{core}:2.84652658467;NFIX:2.7676877533;ZBTB6:2.74267461608;PRRX1,2:2.73017886349;NKX3-2:2.61138444493;TFAP2B:2.61138237634;SMAD1..7,9:2.58663456567;RFX1:2.5739462341;ATF2:2.56815756673;EBF1:2.4936489516;GCM1,2:2.46741490466;TGIF1:2.44398424379;GTF2I:2.44233508303;PATZ1:2.37744407549;EP300:2.33046092024;JUN:2.2987894095;SOX17:2.29235110262;MAZ:2.28780084001;PAX5:2.22525605292;RFX2..5_RFXANK_RFXAP:2.21918313801;MZF1:2.21703519832;PRDM1:2.20993879805;EGR1..3:2.20236838113;SP1:2.19283879776;LMO2:2.03955708351;RBPJ:2.00326539259;ZNF423:1.99859080903;CUX2:1.98961392554;GFI1B:1.95923814265;TFAP2{A,C}:1.90997537784;POU6F1:1.85567522433;BREu{core}:1.76912463712;LEF1_TCF7_TCF7L1,2:1.72976616178;TLX1..3_NFIC{dimer}:1.55691735372;SREBF1,2:1.52782547665;HOX{A6,A7,B6,B7}:1.51747287525;KLF4:1.47320616979;MAFB:1.41866321716;XBP1:1.41753354761;HBP1_HMGB_SSRP1_UBTF:1.41061495338;FOX{D1,D2}:1.4072144379;FOXP3:1.38730560875;AHR_ARNT_ARNT2:1.35392709462;OCT4_SOX2{dimer}:1.34745985186;GATA4:1.34605089707;POU5F1:1.30412371673;GTF2A1,2:1.24381680572;RORA:1.23662664479;ZIC1..3:1.19798005938;TFDP1:1.17826629499;VSX1,2:1.16673614366;NKX2-3_NKX2-5:1.14233501837;AR:1.13962550917;MYBL2:1.12104154453;FOX{F1,F2,J1}:1.10814611329;DBP:1.05670072317;NR3C1:0.998294678153;XCPE1{core}:0.987653180773;NRF1:0.984855387267;PAX6:0.975117845816;PDX1:0.923241000531;FOXM1:0.914393155918;ESRRA:0.896802553824;STAT1,3:0.884271548373;FOXO1,3,4:0.835405631591;TFCP2:0.761635082658;ZNF238:0.741818853328;MYOD1:0.728328752178;ZNF143:0.673722276227;STAT2,4,6:0.672287386176;T:0.665143257914;GZF1:0.625318071459;IRF7:0.625130024952;HMX1:0.614552827391;MEF2{A,B,C,D}:0.605308691194;GFI1:0.59874027186;PBX1:0.583264525845;SPZ1:0.580739155677;ADNP_IRX_SIX_ZHX:0.526257398826;NFIL3:0.505402783343;TFAP4:0.464336719705;FOX{I1,J2}:0.463956412285;CREB1:0.453218466018;HAND1,2:0.40360308197;NR5A1,2:0.374290033989;NFY{A,B,C}:0.343471682015;BPTF:0.333052400437;ONECUT1,2:0.313583694541;HOX{A4,D4}:0.313149000964;ARID5B:0.289275500641;NFATC1..3:0.2814166976;FOXQ1:0.23856193396;FOXP1:0.238475304261;PAX2:0.228752696267;IRF1,2:0.216128077388;TBP:0.199409504034;ATF4:0.198937324716;NFE2L2:0.187787672851;CDC5L:0.165532116744;TLX2:0.148709477757;ZEB1:0.129349167988;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.127834358037;FOXN1:0.117221776473;TOPORS:0.08857388183;FOXA2:0.0806876198223;SRF:0.0499987863096;CRX:0.0244216103191;bHLH_family:0.0111404180859;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00437207446018;ATF5_CREB3:-0.00489913700247;TBX4,5:-0.00723989527587;ZNF384:-0.0551272518252;HSF1,2:-0.0717769970342;ETS1,2:-0.0849209663344;POU3F1..4:-0.100721279227;ZNF148:-0.143403562249;NR1H4:-0.189070020044;ESR1:-0.219813863862;ALX4:-0.233063310658;HOXA9_MEIS1:-0.233273893374;IKZF1:-0.252337468544;NFE2:-0.252875025595;GATA6:-0.302264741663;HMGA1,2:-0.329784838562;SPI1:-0.343552115257;YY1:-0.34451883368;TP53:-0.361475135406;ATF6:-0.363001945731;SNAI1..3:-0.363437052403;PAX3,7:-0.399829757129;TEAD1:-0.403654990222;HNF1A:-0.423083934191;LHX3,4:-0.426826887382;CEBPA,B_DDIT3:-0.45365361893;NANOG{mouse}:-0.459876724859;SPIB:-0.467161703902;RXR{A,B,G}:-0.471358352235;HNF4A_NR2F1,2:-0.521664254796;FOXD3:-0.533439644552;NFE2L1:-0.564267389197;NKX6-1,2:-0.603332294592;IKZF2:-0.611531723702;HES1:-0.711611995634;TAL1_TCF{3,4,12}:-0.721716025571;PAX8:-0.778640301153;FOSL2:-0.803461116824;HLF:-0.803798401788;HIF1A:-0.853311018349;BACH2:-0.864410011729;GLI1..3:-0.871486327981;NFKB1_REL_RELA:-0.893597978827;DMAP1_NCOR{1,2}_SMARC:-0.896767542553;ELF1,2,4:-0.904258150044;ELK1,4_GABP{A,B1}:-0.931169937396;FOS_FOS{B,L1}_JUN{B,D}:-0.954850609313;RUNX1..3:-1.01652115817;POU1F1:-1.02603610691;POU2F1..3:-1.05161871728;UFEwm:-1.05601588329;PAX1,9:-1.15528178864;E2F1..5:-1.20356233528;PPARG:-1.2275104024;NKX3-1:-1.23902852528;PITX1..3:-1.25075002642;ALX1:-1.3019696105;NKX2-1,4:-1.3889518943;MYB:-1.42279868789;RXRA_VDR{dimer}:-1.44795979644;TEF:-1.59787639003;FOXL1:-1.70295170797;NR6A1:-1.70572976721;EN1,2:-1.77326551253;PAX4:-1.99947616148;EVI1:-2.07549256779;HOX{A5,B5}:-2.17264788732;ZBTB16:-2.34034874236;AIRE:-2.35447164693;NKX2-2,8:-2.53967771606;CDX1,2,4:-2.66159934993;STAT5{A,B}:-2.829037075 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10038-101F2;search_select_hide=table117:FF:10038-101F2 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | medulla oblongata, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10645 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10645
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10645
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0208 |
| 10 | 10 | 0.0193 |
| 100 | 100 | 0.209 |
| 101 | 101 | 0.994 |
| 102 | 102 | 0.846 |
| 103 | 103 | 0.122 |
| 104 | 104 | 0.214 |
| 105 | 105 | 0.653 |
| 106 | 106 | 0.0809 |
| 107 | 107 | 0.261 |
| 108 | 108 | 0.815 |
| 109 | 109 | 0.011 |
| 11 | 11 | 0.012 |
| 110 | 110 | 0.0325 |
| 111 | 111 | 0.0267 |
| 112 | 112 | 0.345 |
| 113 | 113 | 0.606 |
| 114 | 114 | 0.0431 |
| 115 | 115 | 0.826 |
| 116 | 116 | 0.214 |
| 117 | 117 | 0.00647 |
| 118 | 118 | 0.0898 |
| 119 | 119 | 0.115 |
| 12 | 12 | 0.839 |
| 120 | 120 | 0.0754 |
| 121 | 121 | 0.921 |
| 122 | 122 | 0.548 |
| 123 | 123 | 0.49 |
| 124 | 124 | 0.157 |
| 125 | 125 | 0.277 |
| 126 | 126 | 0.126 |
| 127 | 127 | 0.447 |
| 128 | 128 | 0.264 |
| 129 | 129 | 0.478 |
| 13 | 13 | 0.00358 |
| 130 | 130 | 0.97 |
| 131 | 131 | 0.0396 |
| 132 | 132 | 0.679 |
| 133 | 133 | 0.00248 |
| 134 | 134 | 0.236 |
| 135 | 135 | 0.0765 |
| 136 | 136 | 0.0151 |
| 137 | 137 | 0.808 |
| 138 | 138 | 0.803 |
| 139 | 139 | 0.0496 |
| 14 | 14 | 0.879 |
| 140 | 140 | 0.113 |
| 141 | 141 | 0.26 |
| 142 | 142 | 0.854 |
| 143 | 143 | 0.00671 |
| 144 | 144 | 0.959 |
| 145 | 145 | 0.141 |
| 146 | 146 | 0.986 |
| 147 | 147 | 0.96 |
| 148 | 148 | 0.163 |
| 149 | 149 | 0.324 |
| 15 | 15 | 0.048 |
| 150 | 150 | 0.163 |
| 151 | 151 | 0.778 |
| 152 | 152 | 0.288 |
| 153 | 153 | 0.75 |
| 154 | 154 | 0.66 |
| 155 | 155 | 0.165 |
| 156 | 156 | 0.392 |
| 157 | 157 | 0.419 |
| 158 | 158 | 0.824 |
| 159 | 159 | 0.0384 |
| 16 | 16 | 0.0568 |
| 160 | 160 | 0.184 |
| 161 | 161 | 0.217 |
| 162 | 162 | 0.951 |
| 163 | 163 | 0.924 |
| 164 | 164 | 0.00495 |
| 165 | 165 | 0.148 |
| 166 | 166 | 0.896 |
| 167 | 167 | 0.219 |
| 168 | 168 | 0.982 |
| 169 | 169 | 0.0129 |
| 17 | 17 | 0.159 |
| 18 | 18 | 0.0845 |
| 19 | 19 | 0.392 |
| 2 | 2 | 0.746 |
| 20 | 20 | 0.0978 |
| 21 | 21 | 0.0654 |
| 22 | 22 | 0.454 |
| 23 | 23 | 0.633 |
| 24 | 24 | 0.205 |
| 25 | 25 | 0.554 |
| 26 | 26 | 1.66736e-4 |
| 27 | 27 | 0.873 |
| 28 | 28 | 0.813 |
| 29 | 29 | 0.00509 |
| 3 | 3 | 0.0236 |
| 30 | 30 | 0.372 |
| 31 | 31 | 0.957 |
| 32 | 32 | 0.0209 |
| 33 | 33 | 0.116 |
| 34 | 34 | 0.882 |
| 35 | 35 | 0.324 |
| 36 | 36 | 0.0915 |
| 37 | 37 | 0.0492 |
| 38 | 38 | 0.368 |
| 39 | 39 | 0.481 |
| 4 | 4 | 0.916 |
| 40 | 40 | 0.105 |
| 41 | 41 | 0.407 |
| 42 | 42 | 0.162 |
| 43 | 43 | 0.127 |
| 44 | 44 | 0.0397 |
| 45 | 45 | 0.974 |
| 46 | 46 | 0.026 |
| 47 | 47 | 0.0473 |
| 48 | 48 | 0.0412 |
| 49 | 49 | 0.152 |
| 5 | 5 | 0.567 |
| 50 | 50 | 0.615 |
| 51 | 51 | 0.444 |
| 52 | 52 | 0.956 |
| 53 | 53 | 0.755 |
| 54 | 54 | 0.581 |
| 55 | 55 | 0.472 |
| 56 | 56 | 0.576 |
| 57 | 57 | 0.18 |
| 58 | 58 | 0.336 |
| 59 | 59 | 0.197 |
| 6 | 6 | 0.661 |
| 60 | 60 | 0.191 |
| 61 | 61 | 0.0781 |
| 62 | 62 | 0.174 |
| 63 | 63 | 0.237 |
| 64 | 64 | 0.145 |
| 65 | 65 | 0.353 |
| 66 | 66 | 0.263 |
| 67 | 67 | 0.467 |
| 68 | 68 | 0.502 |
| 69 | 69 | 0.511 |
| 7 | 7 | 0.124 |
| 70 | 70 | 0.00697 |
| 71 | 71 | 0.00577 |
| 72 | 72 | 0.508 |
| 73 | 73 | 0.0854 |
| 74 | 74 | 0.518 |
| 75 | 75 | 0.0125 |
| 76 | 76 | 0.138 |
| 77 | 77 | 0.379 |
| 78 | 78 | 0.00144 |
| 79 | 79 | 0.128 |
| 8 | 8 | 0.0438 |
| 80 | 80 | 0.697 |
| 81 | 81 | 0.417 |
| 82 | 82 | 0.473 |
| 83 | 83 | 0.296 |
| 84 | 84 | 0.521 |
| 85 | 85 | 0.36 |
| 86 | 86 | 0.161 |
| 87 | 87 | 0.0185 |
| 88 | 88 | 0.827 |
| 89 | 89 | 0.328 |
| 9 | 9 | 0.815 |
| 90 | 90 | 0.0123 |
| 91 | 91 | 0.321 |
| 92 | 92 | 0.481 |
| 93 | 93 | 0.876 |
| 94 | 94 | 0.035 |
| 95 | 95 | 0.0454 |
| 96 | 96 | 0.994 |
| 97 | 97 | 0.833 |
| 98 | 98 | 0.179 |
| 99 | 99 | 0.902 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10645
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
