FF:11284-116I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005265 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005265 | ||
|accession_numbers=CAGE;DRX008472;DRR009344;DRZ000769;DRZ002154;DRZ012119;DRZ013504 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037158;DRR041524;DRZ007166 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001529,UBERON:0004535,UBERON:0004571,UBERON:0007204,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002589 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000169 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor1.CNhs11086.11284-116I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor1.CNhs11086.11284-116I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor1.CNhs11086.11284-116I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor1.CNhs11086.11284-116I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Brachiocephalic%252c%2520donor1.CNhs11086.11284-116I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11284-116I6 | |id=FF:11284-116I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000169 | ||
|is_obsolete= | |||
|library_id=CNhs11086 | |||
|library_id_phase_based=2:CNhs11086 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11284 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTAGAG.11284 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11284 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTAGAG.11284 | |||
|name=Smooth Muscle Cells - Brachiocephalic, donor1 | |name=Smooth Muscle Cells - Brachiocephalic, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11086,LSID724,release008,COMPLETED | |profile_hcage=CNhs11086,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0316839308944315,0,0.11754352600855,-0.245484981476138,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0794858521468198,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0900212314553984,0,0,0,0,0,0,0,0,0.0442480166664731,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.192001960980818,0,0,0,0,0,0,0,0,-0.053559706085602,0,0,0,0,0,0,0.0738371582016079,0,0,0,-0.0584468268118252,0.055129782945431,0,0.0738371582016079,0,0,-0.0241981930360985,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0240628165637237,0,0,0,0.115375227650153,0.313009579791256,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116I6 | |rna_tube_id=116I6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.GTAGAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.68293498787715e-208!GO:0005737;cytoplasm;3.02322718729324e-199!GO:0043226;organelle;1.05655662014204e-152!GO:0043229;intracellular organelle;2.28516394376037e-152!GO:0043231;intracellular membrane-bound organelle;8.24125584080728e-150!GO:0043227;membrane-bound organelle;8.8499576937439e-150!GO:0044444;cytoplasmic part;1.63521027620964e-145!GO:0044422;organelle part;1.30438819347233e-125!GO:0044446;intracellular organelle part;6.88927014073915e-124!GO:0032991;macromolecular complex;9.88506965727473e-84!GO:0005515;protein binding;5.44887546509509e-79!GO:0030529;ribonucleoprotein complex;3.35372725655738e-74!GO:0044238;primary metabolic process;2.99655953652032e-71!GO:0044237;cellular metabolic process;9.63503046169768e-71!GO:0005739;mitochondrion;2.09166319091761e-64!GO:0043233;organelle lumen;3.46503807329658e-63!GO:0031974;membrane-enclosed lumen;3.46503807329658e-63!GO:0043170;macromolecule metabolic process;1.86154787135716e-62!GO:0031090;organelle membrane;6.45441403898089e-59!GO:0003723;RNA binding;4.13066416276381e-55!GO:0019538;protein metabolic process;4.13590377534833e-54!GO:0044428;nuclear part;5.40448015210279e-54!GO:0044260;cellular macromolecule metabolic process;5.09814798432177e-49!GO:0044267;cellular protein metabolic process;2.11538816804641e-48!GO:0006412;translation;8.30607200367003e-48!GO:0005840;ribosome;1.40885064492076e-47!GO:0016043;cellular component organization and biogenesis;7.55718910154426e-46!GO:0015031;protein transport;9.63773791623548e-46!GO:0009058;biosynthetic process;5.09484460930228e-45!GO:0044429;mitochondrial part;6.45576463850123e-45!GO:0033036;macromolecule localization;1.43963147704157e-44!GO:0045184;establishment of protein localization;5.33156711331981e-43!GO:0003735;structural constituent of ribosome;1.27133022691873e-42!GO:0043234;protein complex;2.2606681155385e-42!GO:0008104;protein localization;3.00243385519473e-42!GO:0044249;cellular biosynthetic process;3.67202547480915e-41!GO:0005634;nucleus;7.26071709449041e-41!GO:0005829;cytosol;4.49505934490427e-40!GO:0009059;macromolecule biosynthetic process;5.33541987250035e-40!GO:0031967;organelle envelope;5.32602021708558e-39!GO:0031975;envelope;1.29992839431104e-38!GO:0033279;ribosomal subunit;3.40513580250876e-37!GO:0006396;RNA processing;5.4729659431881e-37!GO:0031981;nuclear lumen;2.15463624712498e-34!GO:0046907;intracellular transport;3.97706630229078e-34!GO:0005740;mitochondrial envelope;2.30647362362757e-30!GO:0006886;intracellular protein transport;1.00869425192253e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.74367244990131e-29!GO:0031966;mitochondrial membrane;1.66827829540674e-28!GO:0016071;mRNA metabolic process;4.19939100070275e-28!GO:0043283;biopolymer metabolic process;1.09825729813077e-27!GO:0008380;RNA splicing;6.34588869725435e-27!GO:0019866;organelle inner membrane;1.4404736171092e-26!GO:0006996;organelle organization and biogenesis;5.0577588245218e-26!GO:0005783;endoplasmic reticulum;8.95894359592635e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.15807785183234e-25!GO:0005743;mitochondrial inner membrane;1.56189666109999e-25!GO:0065003;macromolecular complex assembly;1.78518268246905e-25!GO:0012505;endomembrane system;4.64171556125886e-25!GO:0006397;mRNA processing;2.84548204935165e-24!GO:0010467;gene expression;4.56983443142531e-24!GO:0044445;cytosolic part;1.65964581893288e-23!GO:0022607;cellular component assembly;1.10156248274875e-22!GO:0006119;oxidative phosphorylation;2.90441400114596e-22!GO:0051649;establishment of cellular localization;3.43759123602987e-22!GO:0051641;cellular localization;4.37685765382815e-22!GO:0044432;endoplasmic reticulum part;2.53762830099242e-21!GO:0043228;non-membrane-bound organelle;2.84967813384246e-21!GO:0043232;intracellular non-membrane-bound organelle;2.84967813384246e-21!GO:0005654;nucleoplasm;1.07489884233535e-20!GO:0044455;mitochondrial membrane part;1.6560611550356e-20!GO:0005794;Golgi apparatus;1.83514685315384e-20!GO:0006457;protein folding;2.58708008881191e-20!GO:0005681;spliceosome;9.55261386321229e-20!GO:0015935;small ribosomal subunit;4.17811271929695e-19!GO:0015934;large ribosomal subunit;4.50915600854295e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.39559677347035e-19!GO:0016462;pyrophosphatase activity;7.01099156117397e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.448552165863e-19!GO:0000166;nucleotide binding;8.41422126697881e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.00659797439473e-18!GO:0017111;nucleoside-triphosphatase activity;5.25619898717198e-18!GO:0031980;mitochondrial lumen;1.33200694266694e-17!GO:0005759;mitochondrial matrix;1.33200694266694e-17!GO:0048770;pigment granule;1.9242573150967e-17!GO:0042470;melanosome;1.9242573150967e-17!GO:0051186;cofactor metabolic process;2.67844766809558e-17!GO:0016874;ligase activity;2.91488099168755e-17!GO:0005746;mitochondrial respiratory chain;3.28094748022556e-17!GO:0044451;nucleoplasm part;4.58257752640494e-17!GO:0006512;ubiquitin cycle;4.02359057870887e-16!GO:0008134;transcription factor binding;8.04025904103882e-16!GO:0022618;protein-RNA complex assembly;1.26622027363476e-15!GO:0016192;vesicle-mediated transport;1.4415284338465e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7128565436889e-15!GO:0006605;protein targeting;1.71681784946879e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.17462839464295e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.34068635962931e-15!GO:0044265;cellular macromolecule catabolic process;2.77385921554435e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.04679832704766e-15!GO:0043285;biopolymer catabolic process;5.76115124446649e-15!GO:0009057;macromolecule catabolic process;7.45028132254814e-15!GO:0005730;nucleolus;8.73235484188663e-15!GO:0005789;endoplasmic reticulum membrane;8.73235484188663e-15!GO:0008135;translation factor activity, nucleic acid binding;9.72123681374328e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.4229138372242e-14!GO:0003954;NADH dehydrogenase activity;1.4229138372242e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.4229138372242e-14!GO:0051082;unfolded protein binding;1.65537674273655e-14!GO:0048193;Golgi vesicle transport;1.65537674273655e-14!GO:0044248;cellular catabolic process;1.69128065977747e-14!GO:0043412;biopolymer modification;2.3504749701534e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;3.52577259795913e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.17043416439256e-14!GO:0017076;purine nucleotide binding;5.48458499786476e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.49955442473549e-14!GO:0019941;modification-dependent protein catabolic process;6.56211381352621e-14!GO:0043632;modification-dependent macromolecule catabolic process;6.56211381352621e-14!GO:0032553;ribonucleotide binding;7.8143177015906e-14!GO:0032555;purine ribonucleotide binding;7.8143177015906e-14!GO:0044257;cellular protein catabolic process;9.32455563582579e-14!GO:0006732;coenzyme metabolic process;9.57773226345338e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.09399226903607e-13!GO:0030163;protein catabolic process;1.31542544179354e-13!GO:0006464;protein modification process;2.89577834629931e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.09811379242589e-13!GO:0042773;ATP synthesis coupled electron transport;5.09811379242589e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.32681728740663e-13!GO:0045271;respiratory chain complex I;5.32681728740663e-13!GO:0005747;mitochondrial respiratory chain complex I;5.32681728740663e-13!GO:0006259;DNA metabolic process;5.35729727783838e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.74729736646462e-12!GO:0005761;mitochondrial ribosome;3.754032873089e-12!GO:0000313;organellar ribosome;3.754032873089e-12!GO:0005793;ER-Golgi intermediate compartment;5.17279610310116e-12!GO:0003743;translation initiation factor activity;1.76929515617288e-11!GO:0009259;ribonucleotide metabolic process;2.01088163219617e-11!GO:0009055;electron carrier activity;3.72908830736179e-11!GO:0006163;purine nucleotide metabolic process;4.3297728432601e-11!GO:0009150;purine ribonucleotide metabolic process;5.5842891417479e-11!GO:0005524;ATP binding;7.12948851599869e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;9.5496096947963e-11!GO:0000375;RNA splicing, via transesterification reactions;9.5496096947963e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.5496096947963e-11!GO:0042254;ribosome biogenesis and assembly;9.72483700280962e-11!GO:0030554;adenyl nucleotide binding;1.0015874756746e-10!GO:0032559;adenyl ribonucleotide binding;1.06533680259817e-10!GO:0043687;post-translational protein modification;1.73048113568843e-10!GO:0012501;programmed cell death;2.1842206058036e-10!GO:0006164;purine nucleotide biosynthetic process;3.12374364139199e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.87700307514623e-10!GO:0006413;translational initiation;3.97034272360284e-10!GO:0006915;apoptosis;4.15681121743306e-10!GO:0009260;ribonucleotide biosynthetic process;4.72516864561729e-10!GO:0003712;transcription cofactor activity;4.72516864561729e-10!GO:0044431;Golgi apparatus part;5.87737422937285e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.61854751499843e-10!GO:0005635;nuclear envelope;8.26349757766281e-10!GO:0006913;nucleocytoplasmic transport;9.1513469994385e-10!GO:0031965;nuclear membrane;1.30143880060723e-09!GO:0008565;protein transporter activity;1.49621254418987e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.53507747704362e-09!GO:0051169;nuclear transport;2.01594127465829e-09!GO:0048523;negative regulation of cellular process;2.02122990177326e-09!GO:0009056;catabolic process;2.02122990177326e-09!GO:0019787;small conjugating protein ligase activity;2.05216963636394e-09!GO:0008639;small protein conjugating enzyme activity;2.26769524643202e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.07482254857989e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.07482254857989e-09!GO:0009141;nucleoside triphosphate metabolic process;3.57033846207646e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.92126072245539e-09!GO:0004842;ubiquitin-protein ligase activity;4.00235190837113e-09!GO:0008219;cell death;4.10002106000699e-09!GO:0016265;death;4.10002106000699e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.21960536665421e-09!GO:0005788;endoplasmic reticulum lumen;4.99867814751336e-09!GO:0006446;regulation of translational initiation;5.18731036523877e-09!GO:0044453;nuclear membrane part;5.75590606070039e-09!GO:0051188;cofactor biosynthetic process;6.36718895087568e-09!GO:0016491;oxidoreductase activity;6.84719227979109e-09!GO:0009060;aerobic respiration;7.96350783873775e-09!GO:0009142;nucleoside triphosphate biosynthetic process;9.70579730091074e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.70579730091074e-09!GO:0016881;acid-amino acid ligase activity;9.81117894701822e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.97692784406869e-09!GO:0030120;vesicle coat;1.07751749224023e-08!GO:0030662;coated vesicle membrane;1.07751749224023e-08!GO:0005768;endosome;1.11039716973483e-08!GO:0006399;tRNA metabolic process;1.14858908292384e-08!GO:0016887;ATPase activity;1.25704238550916e-08!GO:0017038;protein import;1.27785893327791e-08!GO:0007049;cell cycle;1.28548055627848e-08!GO:0042623;ATPase activity, coupled;1.36295007975243e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.51770215741461e-08!GO:0015986;ATP synthesis coupled proton transport;1.60741225416324e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.60741225416324e-08!GO:0016604;nuclear body;1.83471571148042e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.8836327305413e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.8836327305413e-08!GO:0048475;coated membrane;2.73705240500486e-08!GO:0030117;membrane coat;2.73705240500486e-08!GO:0003924;GTPase activity;3.27943581872296e-08!GO:0048519;negative regulation of biological process;3.4566614272421e-08!GO:0046034;ATP metabolic process;3.51646807145462e-08!GO:0045333;cellular respiration;3.72636329097454e-08!GO:0003676;nucleic acid binding;4.48712143554112e-08!GO:0051246;regulation of protein metabolic process;5.51279962090892e-08!GO:0019829;cation-transporting ATPase activity;7.62521628058207e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.26349699693153e-08!GO:0004812;aminoacyl-tRNA ligase activity;8.26349699693153e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.26349699693153e-08!GO:0006461;protein complex assembly;8.54584299431194e-08!GO:0000139;Golgi membrane;1.03761276972282e-07!GO:0043038;amino acid activation;1.44626880002922e-07!GO:0006418;tRNA aminoacylation for protein translation;1.44626880002922e-07!GO:0043039;tRNA aminoacylation;1.44626880002922e-07!GO:0031988;membrane-bound vesicle;1.52849655882857e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.66527683567358e-07!GO:0009117;nucleotide metabolic process;1.87849540599437e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.90941197077828e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.01391851503099e-07!GO:0006754;ATP biosynthetic process;2.03655497367341e-07!GO:0006753;nucleoside phosphate metabolic process;2.03655497367341e-07!GO:0005643;nuclear pore;2.52151235895043e-07!GO:0065002;intracellular protein transport across a membrane;2.63130073937157e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.81555266966691e-07!GO:0006916;anti-apoptosis;2.81800620900458e-07!GO:0006099;tricarboxylic acid cycle;3.29207356275579e-07!GO:0046356;acetyl-CoA catabolic process;3.29207356275579e-07!GO:0031252;leading edge;3.29207356275579e-07!GO:0043069;negative regulation of programmed cell death;3.4475105475244e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.27849087953621e-07!GO:0016070;RNA metabolic process;4.30986193050042e-07!GO:0043067;regulation of programmed cell death;4.47634009800587e-07!GO:0009108;coenzyme biosynthetic process;4.78110507177303e-07!GO:0008026;ATP-dependent helicase activity;4.94887827655109e-07!GO:0006364;rRNA processing;5.16961129842511e-07!GO:0044440;endosomal part;5.19579514425792e-07!GO:0010008;endosome membrane;5.19579514425792e-07!GO:0051187;cofactor catabolic process;5.44580961803528e-07!GO:0042981;regulation of apoptosis;6.22079447824669e-07!GO:0016740;transferase activity;6.3432712289629e-07!GO:0016787;hydrolase activity;6.49149223149769e-07!GO:0043066;negative regulation of apoptosis;7.4820859574058e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.50502666368688e-07!GO:0016072;rRNA metabolic process;7.53158562368728e-07!GO:0005773;vacuole;7.81211282283703e-07!GO:0005798;Golgi-associated vesicle;8.57983559166217e-07!GO:0009109;coenzyme catabolic process;1.03456437378777e-06!GO:0031982;vesicle;1.05896876390742e-06!GO:0006084;acetyl-CoA metabolic process;1.19498652027955e-06!GO:0004386;helicase activity;1.21953471920571e-06!GO:0006323;DNA packaging;1.39523687743286e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.44064287193837e-06!GO:0031410;cytoplasmic vesicle;1.56490276920014e-06!GO:0016607;nuclear speck;1.59259961977709e-06!GO:0022402;cell cycle process;1.92621050369905e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.03531602800957e-06!GO:0007005;mitochondrion organization and biogenesis;2.62388383101794e-06!GO:0046930;pore complex;3.08622556984429e-06!GO:0006752;group transfer coenzyme metabolic process;3.20590740814726e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.59522545497043e-06!GO:0006091;generation of precursor metabolites and energy;3.76278822921313e-06!GO:0045259;proton-transporting ATP synthase complex;5.00623907834496e-06!GO:0005525;GTP binding;6.0676128007495e-06!GO:0051276;chromosome organization and biogenesis;6.27479856569299e-06!GO:0006974;response to DNA damage stimulus;6.45405083449559e-06!GO:0016853;isomerase activity;6.45405083449559e-06!GO:0051726;regulation of cell cycle;6.5109638517578e-06!GO:0000323;lytic vacuole;6.96200181499339e-06!GO:0005764;lysosome;6.96200181499339e-06!GO:0051170;nuclear import;6.96200181499339e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.42673271242722e-06!GO:0006793;phosphorus metabolic process;7.6184805518192e-06!GO:0006796;phosphate metabolic process;7.6184805518192e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.19559870170163e-06!GO:0000151;ubiquitin ligase complex;8.21659512992306e-06!GO:0008654;phospholipid biosynthetic process;8.38012179380292e-06!GO:0000074;regulation of progression through cell cycle;8.68078420428209e-06!GO:0030029;actin filament-based process;9.12795371495113e-06!GO:0006606;protein import into nucleus;9.52980135717653e-06!GO:0005770;late endosome;1.05751169934023e-05!GO:0000278;mitotic cell cycle;1.08819110599866e-05!GO:0006366;transcription from RNA polymerase II promoter;1.14265543193901e-05!GO:0003714;transcription corepressor activity;1.17481165539056e-05!GO:0031968;organelle outer membrane;1.18028295158133e-05!GO:0019867;outer membrane;1.31991385862581e-05!GO:0005905;coated pit;1.32305989897203e-05!GO:0032446;protein modification by small protein conjugation;1.36425538614644e-05!GO:0016567;protein ubiquitination;1.40771745185775e-05!GO:0016310;phosphorylation;1.71288674299315e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.71888568468454e-05!GO:0005667;transcription factor complex;1.75188528199453e-05!GO:0044262;cellular carbohydrate metabolic process;1.75811393693791e-05!GO:0065004;protein-DNA complex assembly;1.80386907661249e-05!GO:0016564;transcription repressor activity;1.86810622442326e-05!GO:0016049;cell growth;2.48183943958389e-05!GO:0008361;regulation of cell size;2.59019113988144e-05!GO:0045454;cell redox homeostasis;2.60176887848814e-05!GO:0006613;cotranslational protein targeting to membrane;3.12738080097131e-05!GO:0051789;response to protein stimulus;3.13769706577348e-05!GO:0006986;response to unfolded protein;3.13769706577348e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.47603185106295e-05!GO:0003713;transcription coactivator activity;3.51410419473266e-05!GO:0005048;signal sequence binding;3.53657617242302e-05!GO:0030867;rough endoplasmic reticulum membrane;3.83461344023092e-05!GO:0000245;spliceosome assembly;3.94709595864842e-05!GO:0050657;nucleic acid transport;4.06735447340327e-05!GO:0051236;establishment of RNA localization;4.06735447340327e-05!GO:0050658;RNA transport;4.06735447340327e-05!GO:0006403;RNA localization;4.32017348734357e-05!GO:0001558;regulation of cell growth;4.41700383728667e-05!GO:0048522;positive regulation of cellular process;4.49166730752708e-05!GO:0006333;chromatin assembly or disassembly;4.67647535924432e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.08148480423896e-05!GO:0005741;mitochondrial outer membrane;5.34524613363277e-05!GO:0004298;threonine endopeptidase activity;5.51551260286668e-05!GO:0030133;transport vesicle;5.7362963485483e-05!GO:0032561;guanyl ribonucleotide binding;6.01978755063687e-05!GO:0019001;guanyl nucleotide binding;6.01978755063687e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.47591906218937e-05!GO:0019843;rRNA binding;6.56085708623485e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.17378266185577e-05!GO:0005762;mitochondrial large ribosomal subunit;7.55491740721805e-05!GO:0000315;organellar large ribosomal subunit;7.55491740721805e-05!GO:0031324;negative regulation of cellular metabolic process;7.71684111691047e-05!GO:0006281;DNA repair;8.51628876479635e-05!GO:0008092;cytoskeletal protein binding;8.88560585990572e-05!GO:0016044;membrane organization and biogenesis;9.01299492256353e-05!GO:0043623;cellular protein complex assembly;9.56136659613475e-05!GO:0007264;small GTPase mediated signal transduction;9.66258709431923e-05!GO:0003724;RNA helicase activity;9.98964691859626e-05!GO:0007243;protein kinase cascade;0.000105283411383932!GO:0016859;cis-trans isomerase activity;0.000114317850455846!GO:0050794;regulation of cellular process;0.000125040271805119!GO:0003697;single-stranded DNA binding;0.000141536024664652!GO:0016568;chromatin modification;0.000146257087634213!GO:0009165;nucleotide biosynthetic process;0.000146896324899221!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000152958875257883!GO:0005769;early endosome;0.000176862631740179!GO:0009719;response to endogenous stimulus;0.000178930729325391!GO:0007010;cytoskeleton organization and biogenesis;0.000179744691364166!GO:0016779;nucleotidyltransferase activity;0.000189089040046497!GO:0030176;integral to endoplasmic reticulum membrane;0.000215538367769037!GO:0016563;transcription activator activity;0.000221745303514043!GO:0008047;enzyme activator activity;0.000226095811682236!GO:0005885;Arp2/3 protein complex;0.000233052260616793!GO:0015630;microtubule cytoskeleton;0.000243389467844103!GO:0046474;glycerophospholipid biosynthetic process;0.000289986996922816!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000294962788478345!GO:0009892;negative regulation of metabolic process;0.000295302034941643!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000296052259480617!GO:0045786;negative regulation of progression through cell cycle;0.000299850712538411!GO:0006260;DNA replication;0.00036841532581736!GO:0043021;ribonucleoprotein binding;0.000384464334477041!GO:0030663;COPI coated vesicle membrane;0.0003872050043249!GO:0030126;COPI vesicle coat;0.0003872050043249!GO:0043566;structure-specific DNA binding;0.000390453617032351!GO:0019899;enzyme binding;0.000393596677702154!GO:0006612;protein targeting to membrane;0.000418014663384857!GO:0006414;translational elongation;0.000426695257354499!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000436289559671242!GO:0015399;primary active transmembrane transporter activity;0.000436289559671242!GO:0008250;oligosaccharyl transferase complex;0.000497529559387684!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000498694855715231!GO:0006334;nucleosome assembly;0.00056513469061298!GO:0004576;oligosaccharyl transferase activity;0.000568760566222196!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000568760566222196!GO:0051028;mRNA transport;0.000620027107877969!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000644088583983224!GO:0030137;COPI-coated vesicle;0.000645962182696688!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000646131128560365!GO:0031497;chromatin assembly;0.000664324509629934!GO:0006626;protein targeting to mitochondrion;0.000739355741956128!GO:0006891;intra-Golgi vesicle-mediated transport;0.000743880195668329!GO:0043284;biopolymer biosynthetic process;0.000770841707673666!GO:0051427;hormone receptor binding;0.000804548519085425!GO:0000785;chromatin;0.000826735825637981!GO:0006082;organic acid metabolic process;0.000845391256584539!GO:0030658;transport vesicle membrane;0.000857859592297872!GO:0008610;lipid biosynthetic process;0.000857859592297872!GO:0051920;peroxiredoxin activity;0.000858350580847838!GO:0005694;chromosome;0.00088508481938577!GO:0019752;carboxylic acid metabolic process;0.000941581588561164!GO:0046467;membrane lipid biosynthetic process;0.000954287337848213!GO:0005791;rough endoplasmic reticulum;0.000963148472787796!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00103785665351067!GO:0008186;RNA-dependent ATPase activity;0.00117028076162929!GO:0003899;DNA-directed RNA polymerase activity;0.00119080986040701!GO:0046489;phosphoinositide biosynthetic process;0.00132580083926175!GO:0043681;protein import into mitochondrion;0.00134330841825703!GO:0000314;organellar small ribosomal subunit;0.00135717488846402!GO:0005763;mitochondrial small ribosomal subunit;0.00135717488846402!GO:0040008;regulation of growth;0.00144925865501757!GO:0031072;heat shock protein binding;0.00148135322429958!GO:0065009;regulation of a molecular function;0.00152949558519588!GO:0035257;nuclear hormone receptor binding;0.00155480190082988!GO:0018196;peptidyl-asparagine modification;0.00156198454326151!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00156198454326151!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00159288878165533!GO:0030134;ER to Golgi transport vesicle;0.00181685010515224!GO:0044427;chromosomal part;0.00198909623378845!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00199161562388138!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00208627360181399!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00208627360181399!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00208627360181399!GO:0030118;clathrin coat;0.00209009481753769!GO:0007006;mitochondrial membrane organization and biogenesis;0.00218147250364662!GO:0045045;secretory pathway;0.00218184357238568!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00224080271119537!GO:0000059;protein import into nucleus, docking;0.00225781589083125!GO:0030132;clathrin coat of coated pit;0.0022987085149417!GO:0030659;cytoplasmic vesicle membrane;0.00241376401051098!GO:0015992;proton transport;0.00250158751373904!GO:0048487;beta-tubulin binding;0.00250865331125392!GO:0042802;identical protein binding;0.00251480057529365!GO:0004177;aminopeptidase activity;0.00267151218769755!GO:0006839;mitochondrial transport;0.00269831898117943!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00270513822407719!GO:0016197;endosome transport;0.00271604561906979!GO:0030041;actin filament polymerization;0.00273340409232369!GO:0030660;Golgi-associated vesicle membrane;0.00276958485124656!GO:0004004;ATP-dependent RNA helicase activity;0.00280145261928533!GO:0016481;negative regulation of transcription;0.00290989556336182!GO:0030127;COPII vesicle coat;0.00302001373745975!GO:0012507;ER to Golgi transport vesicle membrane;0.00302001373745975!GO:0051168;nuclear export;0.00304162114193767!GO:0006509;membrane protein ectodomain proteolysis;0.00309454417708296!GO:0033619;membrane protein proteolysis;0.00309454417708296!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00315366955375864!GO:0046483;heterocycle metabolic process;0.00315366955375864!GO:0005813;centrosome;0.00315615896755595!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00315615896755595!GO:0006818;hydrogen transport;0.00323641561199229!GO:0015631;tubulin binding;0.00327837044640842!GO:0005096;GTPase activator activity;0.00330137463488391!GO:0001726;ruffle;0.00331383035863508!GO:0043492;ATPase activity, coupled to movement of substances;0.00331845675716307!GO:0016126;sterol biosynthetic process;0.00336271687443655!GO:0006650;glycerophospholipid metabolic process;0.00343503885966275!GO:0030027;lamellipodium;0.00346808675249938!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00383941144250874!GO:0044433;cytoplasmic vesicle part;0.00396727779126402!GO:0005774;vacuolar membrane;0.00399420315839656!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00402003740875875!GO:0050789;regulation of biological process;0.0040714809807472!GO:0017166;vinculin binding;0.00419735949354097!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00431142816657437!GO:0008139;nuclear localization sequence binding;0.00437110495170812!GO:0000087;M phase of mitotic cell cycle;0.00443880895572306!GO:0008632;apoptotic program;0.00446790430280457!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00455836270485749!GO:0009967;positive regulation of signal transduction;0.00458595400883617!GO:0008243;plasminogen activator activity;0.00458779314205559!GO:0050662;coenzyme binding;0.00458779314205559!GO:0007067;mitosis;0.0047214106045681!GO:0048471;perinuclear region of cytoplasm;0.00472303164274452!GO:0051301;cell division;0.0047454206885202!GO:0030880;RNA polymerase complex;0.00477808564223895!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00478163826785761!GO:0006007;glucose catabolic process;0.00481089091616746!GO:0022890;inorganic cation transmembrane transporter activity;0.00495822264452886!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00500524467609368!GO:0048500;signal recognition particle;0.00513437058599648!GO:0045941;positive regulation of transcription;0.00523389787210352!GO:0048518;positive regulation of biological process;0.00529245579012883!GO:0005815;microtubule organizing center;0.0055403488622079!GO:0006497;protein amino acid lipidation;0.00554917308976024!GO:0008154;actin polymerization and/or depolymerization;0.00561380125053559!GO:0031301;integral to organelle membrane;0.0058115712211482!GO:0012506;vesicle membrane;0.0059175668819116!GO:0045893;positive regulation of transcription, DNA-dependent;0.00617465346477155!GO:0003746;translation elongation factor activity;0.0062655556805913!GO:0051329;interphase of mitotic cell cycle;0.00626796979496335!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00626796979496335!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00626796979496335!GO:0046519;sphingoid metabolic process;0.00646926353586459!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00656946127812559!GO:0006897;endocytosis;0.00669035939715352!GO:0010324;membrane invagination;0.00669035939715352!GO:0006383;transcription from RNA polymerase III promoter;0.00671378015397093!GO:0007040;lysosome organization and biogenesis;0.0067695878822989!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00719845926753519!GO:0015002;heme-copper terminal oxidase activity;0.00719845926753519!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00719845926753519!GO:0004129;cytochrome-c oxidase activity;0.00719845926753519!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00736332738727459!GO:0051252;regulation of RNA metabolic process;0.00737286937563048!GO:0007265;Ras protein signal transduction;0.00761207312332398!GO:0000049;tRNA binding;0.00789281341805102!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00790116823829658!GO:0007033;vacuole organization and biogenesis;0.00790202355225341!GO:0006595;polyamine metabolic process;0.00813591201628263!GO:0006740;NADPH regeneration;0.00832795301604329!GO:0006098;pentose-phosphate shunt;0.00832795301604329!GO:0005862;muscle thin filament tropomyosin;0.00857354332805789!GO:0006118;electron transport;0.00862964295727326!GO:0030521;androgen receptor signaling pathway;0.00918465177316754!GO:0031418;L-ascorbic acid binding;0.00923651800087141!GO:0032940;secretion by cell;0.00928452228694888!GO:0008033;tRNA processing;0.00974024976748933!GO:0031902;late endosome membrane;0.00976354823824073!GO:0022403;cell cycle phase;0.00990279874700066!GO:0044437;vacuolar part;0.00996099296792106!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0100407445362755!GO:0000428;DNA-directed RNA polymerase complex;0.0100407445362755!GO:0006778;porphyrin metabolic process;0.0102988621079009!GO:0033013;tetrapyrrole metabolic process;0.0102988621079009!GO:0006695;cholesterol biosynthetic process;0.0105491311464773!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0105491311464773!GO:0045047;protein targeting to ER;0.0105491311464773!GO:0051087;chaperone binding;0.010554489060048!GO:0003711;transcription elongation regulator activity;0.0105797204794388!GO:0008180;signalosome;0.0109360292841136!GO:0006643;membrane lipid metabolic process;0.0109360292841136!GO:0005869;dynactin complex;0.0112318317142619!GO:0031543;peptidyl-proline dioxygenase activity;0.0112434912475952!GO:0030119;AP-type membrane coat adaptor complex;0.0113718114118404!GO:0030125;clathrin vesicle coat;0.0114080720054552!GO:0030665;clathrin coated vesicle membrane;0.0114080720054552!GO:0005765;lysosomal membrane;0.0117715755285188!GO:0051287;NAD binding;0.0118735138338819!GO:0016363;nuclear matrix;0.0119968183094309!GO:0033673;negative regulation of kinase activity;0.0123785033513218!GO:0006469;negative regulation of protein kinase activity;0.0123785033513218!GO:0006672;ceramide metabolic process;0.0125266368222807!GO:0051539;4 iron, 4 sulfur cluster binding;0.0125266368222807!GO:0006520;amino acid metabolic process;0.0126107569537676!GO:0043488;regulation of mRNA stability;0.013172838328994!GO:0043487;regulation of RNA stability;0.013172838328994!GO:0007034;vacuolar transport;0.0135615936834524!GO:0003756;protein disulfide isomerase activity;0.0135615936834524!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0135615936834524!GO:0006979;response to oxidative stress;0.0135615936834524!GO:0050811;GABA receptor binding;0.0135615936834524!GO:0030384;phosphoinositide metabolic process;0.0138442568377716!GO:0006807;nitrogen compound metabolic process;0.0139758081249048!GO:0044452;nucleolar part;0.0142824457843396!GO:0005832;chaperonin-containing T-complex;0.0145319881262902!GO:0043022;ribosome binding;0.015065298034401!GO:0006984;ER-nuclear signaling pathway;0.0151480288902819!GO:0005684;U2-dependent spliceosome;0.0154803475034158!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0156095164895774!GO:0045792;negative regulation of cell size;0.0158411741638557!GO:0006506;GPI anchor biosynthetic process;0.0161038196722553!GO:0000030;mannosyltransferase activity;0.0165172902418607!GO:0030308;negative regulation of cell growth;0.0165213279009095!GO:0035258;steroid hormone receptor binding;0.0166937694116901!GO:0051540;metal cluster binding;0.0166937694116901!GO:0051536;iron-sulfur cluster binding;0.0166937694116901!GO:0008312;7S RNA binding;0.0167343782362995!GO:0030145;manganese ion binding;0.0168377604362113!GO:0051348;negative regulation of transferase activity;0.0168630441522529!GO:0042158;lipoprotein biosynthetic process;0.0169067382446089!GO:0005975;carbohydrate metabolic process;0.0170620390008324!GO:0051325;interphase;0.0170735689823206!GO:0030131;clathrin adaptor complex;0.0171261703468014!GO:0042168;heme metabolic process;0.0171519531030658!GO:0006950;response to stress;0.0172094024190513!GO:0035035;histone acetyltransferase binding;0.0172094024190513!GO:0032984;macromolecular complex disassembly;0.0176188967175256!GO:0007242;intracellular signaling cascade;0.0177960853040235!GO:0048468;cell development;0.0178586035831821!GO:0031529;ruffle organization and biogenesis;0.0179128736630045!GO:0019318;hexose metabolic process;0.0181708003697594!GO:0022408;negative regulation of cell-cell adhesion;0.018237045224656!GO:0019798;procollagen-proline dioxygenase activity;0.0185522731076594!GO:0003779;actin binding;0.0186259562398513!GO:0003729;mRNA binding;0.0186665200367227!GO:0048144;fibroblast proliferation;0.0187919613210623!GO:0048145;regulation of fibroblast proliferation;0.0187919613210623!GO:0032507;maintenance of cellular protein localization;0.0188191001783012!GO:0007569;cell aging;0.0192337334514935!GO:0005996;monosaccharide metabolic process;0.0195001432002444!GO:0030433;ER-associated protein catabolic process;0.0196511500211261!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0196511500211261!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0196511500211261!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0196511500211261!GO:0016408;C-acyltransferase activity;0.0202046804611671!GO:0006611;protein export from nucleus;0.0204412330334954!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0206364218783095!GO:0043433;negative regulation of transcription factor activity;0.0208161733339161!GO:0009966;regulation of signal transduction;0.0208338305072984!GO:0000209;protein polyubiquitination;0.0209978484253447!GO:0006505;GPI anchor metabolic process;0.0210707536720154!GO:0006402;mRNA catabolic process;0.0212145608424542!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0215899756683297!GO:0006417;regulation of translation;0.0215995176850423!GO:0051128;regulation of cellular component organization and biogenesis;0.0228947829188712!GO:0043241;protein complex disassembly;0.0235767852322387!GO:0030833;regulation of actin filament polymerization;0.0236965513862958!GO:0008022;protein C-terminus binding;0.0236965513862958!GO:0006779;porphyrin biosynthetic process;0.0236965513862958!GO:0033014;tetrapyrrole biosynthetic process;0.0236965513862958!GO:0016860;intramolecular oxidoreductase activity;0.0241007348689426!GO:0006352;transcription initiation;0.0242766171949025!GO:0004674;protein serine/threonine kinase activity;0.0245317927225162!GO:0000287;magnesium ion binding;0.0245605842162411!GO:0051098;regulation of binding;0.0250020599112665!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0253001572707908!GO:0007021;tubulin folding;0.026115201917972!GO:0007030;Golgi organization and biogenesis;0.0264798919551824!GO:0007162;negative regulation of cell adhesion;0.0268276215277179!GO:0000339;RNA cap binding;0.0271716283234337!GO:0009308;amine metabolic process;0.0279812816595787!GO:0045185;maintenance of protein localization;0.0284876817914507!GO:0048037;cofactor binding;0.0285455268990604!GO:0006401;RNA catabolic process;0.0287539671949787!GO:0006289;nucleotide-excision repair;0.0290293601566721!GO:0016301;kinase activity;0.0291172114683704!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0291918788403584!GO:0005099;Ras GTPase activator activity;0.0292392157933022!GO:0046365;monosaccharide catabolic process;0.0292392157933022!GO:0000096;sulfur amino acid metabolic process;0.0292392157933022!GO:0030032;lamellipodium biogenesis;0.0292392157933022!GO:0007050;cell cycle arrest;0.0293379901480285!GO:0046426;negative regulation of JAK-STAT cascade;0.0298394600565931!GO:0045892;negative regulation of transcription, DNA-dependent;0.0299122312255032!GO:0051235;maintenance of localization;0.0299711368330115!GO:0008538;proteasome activator activity;0.0302811788535561!GO:0006354;RNA elongation;0.0304694705456928!GO:0000786;nucleosome;0.0305134857568802!GO:0001952;regulation of cell-matrix adhesion;0.0308500569091692!GO:0001953;negative regulation of cell-matrix adhesion;0.0311724717285716!GO:0043624;cellular protein complex disassembly;0.0312144693760574!GO:0001666;response to hypoxia;0.0312144693760574!GO:0005801;cis-Golgi network;0.0315707337659249!GO:0031625;ubiquitin protein ligase binding;0.0317268287824599!GO:0050790;regulation of catalytic activity;0.0320938425277682!GO:0006458;'de novo' protein folding;0.0322060650377099!GO:0051084;'de novo' posttranslational protein folding;0.0322060650377099!GO:0005874;microtubule;0.0326045247628138!GO:0016272;prefoldin complex;0.0326045247628138!GO:0006739;NADP metabolic process;0.032830408683218!GO:0006096;glycolysis;0.0330155671831123!GO:0009889;regulation of biosynthetic process;0.0330792812113342!GO:0005092;GDP-dissociation inhibitor activity;0.0330792812113342!GO:0048146;positive regulation of fibroblast proliferation;0.0333681802828287!GO:0006790;sulfur metabolic process;0.0337208444327575!GO:0005100;Rho GTPase activator activity;0.0340804772200048!GO:0030149;sphingolipid catabolic process;0.0340948470767811!GO:0005819;spindle;0.0345969799056934!GO:0051101;regulation of DNA binding;0.0347171265543739!GO:0051059;NF-kappaB binding;0.0353044916665425!GO:0005669;transcription factor TFIID complex;0.0356649556063156!GO:0005758;mitochondrial intermembrane space;0.0357171676285464!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0362380194962416!GO:0051651;maintenance of cellular localization;0.0365078333194579!GO:0005083;small GTPase regulator activity;0.0369059613187284!GO:0006635;fatty acid beta-oxidation;0.0375079082246016!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0383442519791368!GO:0000082;G1/S transition of mitotic cell cycle;0.0390864925220331!GO:0031272;regulation of pseudopodium formation;0.0391234180301722!GO:0031269;pseudopodium formation;0.0391234180301722!GO:0031344;regulation of cell projection organization and biogenesis;0.0391234180301722!GO:0031268;pseudopodium organization and biogenesis;0.0391234180301722!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0391234180301722!GO:0031274;positive regulation of pseudopodium formation;0.0391234180301722!GO:0045936;negative regulation of phosphate metabolic process;0.0395002676530937!GO:0006783;heme biosynthetic process;0.0395047300875211!GO:0009303;rRNA transcription;0.0395901629077872!GO:0008234;cysteine-type peptidase activity;0.0399054881836488!GO:0050681;androgen receptor binding;0.0399054881836488!GO:0000118;histone deacetylase complex;0.0401412075729772!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0401412075729772!GO:0031970;organelle envelope lumen;0.0405852875155787!GO:0006376;mRNA splice site selection;0.0405852875155787!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0405852875155787!GO:0030911;TPR domain binding;0.0405852875155787!GO:0006607;NLS-bearing substrate import into nucleus;0.0409225630312093!GO:0019320;hexose catabolic process;0.0410529007196036!GO:0031326;regulation of cellular biosynthetic process;0.0410529007196036!GO:0003684;damaged DNA binding;0.041076271387094!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0412912545016168!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0412912545016168!GO:0031124;mRNA 3'-end processing;0.0416167912408414!GO:0033559;unsaturated fatty acid metabolic process;0.0423676479003869!GO:0006636;unsaturated fatty acid biosynthetic process;0.0423676479003869!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0439014891606688!GO:0007041;lysosomal transport;0.0441531715429409!GO:0051272;positive regulation of cell motility;0.044376492284184!GO:0040017;positive regulation of locomotion;0.044376492284184!GO:0031901;early endosome membrane;0.0445101820578433!GO:0009112;nucleobase metabolic process;0.0446075003081096!GO:0008637;apoptotic mitochondrial changes;0.0451143981361754!GO:0045926;negative regulation of growth;0.0468417723193992!GO:0003678;DNA helicase activity;0.0468417723193992!GO:0006378;mRNA polyadenylation;0.0468767510848612!GO:0006892;post-Golgi vesicle-mediated transport;0.0469608191751036!GO:0004287;prolyl oligopeptidase activity;0.0471962629251817!GO:0015036;disulfide oxidoreductase activity;0.04725359548589!GO:0030518;steroid hormone receptor signaling pathway;0.0472638609279893!GO:0006733;oxidoreduction coenzyme metabolic process;0.0474291284690183!GO:0031371;ubiquitin conjugating enzyme complex;0.0481832525236044!GO:0004680;casein kinase activity;0.0495457859385035!GO:0019206;nucleoside kinase activity;0.0495457859385035!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0497547130259862!GO:0044255;cellular lipid metabolic process;0.0499275337817738 | |||
|sample_id=11284 | |sample_id=11284 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=brachiocephalic artery | |sample_tissue=brachiocephalic artery | ||
|top_motifs=GTF2A1,2:1.68901389041;PPARG:1.59680280157;HES1:1.42240566766;ALX4:1.37870629012;GCM1,2:1.31082007168;TFCP2:1.28034848445;SRF:1.27650379009;NFE2L1:1.21414020288;HOX{A5,B5}:1.18642020997;NFATC1..3:1.11307246573;ZBTB6:1.10869438157;HIF1A:1.08624616863;TFAP4:1.06074887671;GLI1..3:1.04009749807;HMX1:1.03386536683;ZIC1..3:1.03136861894;ZNF238:1.03113909429;EBF1:0.983439205664;MAFB:0.96685724127;IKZF1:0.955934063997;TLX1..3_NFIC{dimer}:0.951594712793;ZNF148:0.929889233444;ONECUT1,2:0.912720706221;TBX4,5:0.900887379821;ZNF423:0.860884721056;EN1,2:0.855339333353;TFAP2{A,C}:0.848803888654;NKX2-2,8:0.834970449565;CRX:0.809437276502;LHX3,4:0.804688288984;TAL1_TCF{3,4,12}:0.741630838535;SMAD1..7,9:0.723000273971;TP53:0.716644572205;NKX3-1:0.703836124948;NANOG{mouse}:0.702259341841;FOX{I1,J2}:0.673496140344;ATF6:0.6535125881;VSX1,2:0.636947863434;SOX17:0.636546291219;PAX5:0.617403099631;TEAD1:0.602378593736;POU3F1..4:0.586707468807;PAX1,9:0.563931252517;SPZ1:0.554544960484;ARID5B:0.534152408698;TBP:0.52685551981;KLF4:0.50051732044;NFE2L2:0.476106816089;HMGA1,2:0.475797967637;REST:0.464581251256;EVI1:0.459698928179;CDC5L:0.459471269188;HSF1,2:0.452797396418;XBP1:0.43043587965;BACH2:0.422276582375;STAT5{A,B}:0.419581602252;HAND1,2:0.416376412385;XCPE1{core}:0.40065751112;FOSL2:0.388705072851;GTF2I:0.387559451943;FOS_FOS{B,L1}_JUN{B,D}:0.384329533416;POU1F1:0.383492669563;LEF1_TCF7_TCF7L1,2:0.380392360405;POU2F1..3:0.375281383125;UFEwm:0.357883525451;MTE{core}:0.356861315421;NFIL3:0.353148211416;ELK1,4_GABP{A,B1}:0.307248924595;AR:0.305628931631;AHR_ARNT_ARNT2:0.291954465664;GZF1:0.289314062365;HLF:0.289035347759;POU6F1:0.287400959758;ZNF384:0.284024916154;PRDM1:0.273604494494;JUN:0.26633588367;PATZ1:0.264756474327;SOX{8,9,10}:0.261216323197;NKX3-2:0.260629437703;NR3C1:0.242135415017;TFAP2B:0.236765049976;MZF1:0.221783004113;MAZ:0.208362372595;HIC1:0.205585407818;FOXL1:0.197059003524;MYFfamily:0.19419508387;PBX1:0.191743597552;MYBL2:0.183974452484;CEBPA,B_DDIT3:0.179959360463;GATA4:0.172238593501;GFI1B:0.162552904046;FOXQ1:0.15174345007;RXR{A,B,G}:0.145322825607;PRRX1,2:0.125840237611;HNF1A:0.125350758503;NHLH1,2:0.122184305626;NR1H4:0.110228849802;ESR1:0.10453695999;MEF2{A,B,C,D}:0.100996652276;ADNP_IRX_SIX_ZHX:0.0870226698974;ALX1:0.0737122747272;PAX8:0.0731823874031;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0717165083441;NFE2:0.0334049085001;NFKB1_REL_RELA:-0.00517432406802;ETS1,2:-0.0382745565966;SOX2:-0.0395052965767;YY1:-0.0582017945675;bHLH_family:-0.0648573030063;ZFP161:-0.0889737823534;SP1:-0.0958810721264;TLX2:-0.110996746838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12467045729;RFX1:-0.126688919191;NFIX:-0.138478758338;MTF1:-0.140544903947;DBP:-0.144575695478;ELF1,2,4:-0.147800264207;PAX3,7:-0.195674646357;FOXM1:-0.203834310826;NANOG:-0.209681334858;ZNF143:-0.211424611444;GFI1:-0.215086525213;PAX2:-0.216290964562;GATA6:-0.217641996947;RUNX1..3:-0.219651945852;RREB1:-0.235159796255;NRF1:-0.238938239863;MED-1{core}:-0.256846556723;POU5F1:-0.261488355745;SPIB:-0.278918566087;EGR1..3:-0.294141787632;AIRE:-0.307764684007;TEF:-0.311126341129;STAT2,4,6:-0.314675794825;RXRA_VDR{dimer}:-0.316879409459;NR5A1,2:-0.319819331716;EP300:-0.33593581795;HBP1_HMGB_SSRP1_UBTF:-0.337151801075;TGIF1:-0.337622004951;ESRRA:-0.339888949766;SPI1:-0.344209699948;NKX2-3_NKX2-5:-0.348682624827;MYB:-0.358999945258;HNF4A_NR2F1,2:-0.366784422531;TFDP1:-0.367163640774;SOX5:-0.367642959697;TOPORS:-0.42801836061;LMO2:-0.484589084519;ATF5_CREB3:-0.50061062129;FOX{D1,D2}:-0.516287014978;HOX{A4,D4}:-0.532406519347;RORA:-0.546415305325;CREB1:-0.551495848324;FOX{F1,F2,J1}:-0.560251905771;ZEB1:-0.562824792602;NKX2-1,4:-0.568252746797;SNAI1..3:-0.587161846609;DMAP1_NCOR{1,2}_SMARC:-0.595432100476;ATF2:-0.61732760979;FOXP3:-0.619414214028;ATF4:-0.637243930958;OCT4_SOX2{dimer}:-0.653870222501;PAX6:-0.660639630581;NR6A1:-0.664765395664;SREBF1,2:-0.688848279602;HOXA9_MEIS1:-0.71148669743;FOXN1:-0.718584370106;IKZF2:-0.730225920179;T:-0.73934196567;HOX{A6,A7,B6,B7}:-0.74738599425;IRF1,2:-0.762283850606;MYOD1:-0.766017787633;PITX1..3:-0.770470596635;FOXD3:-0.829360030911;NKX6-1,2:-0.830027491406;CUX2:-0.834711440457;IRF7:-0.846702400398;E2F1..5:-0.896074635382;PAX4:-0.903870729391;FOXA2:-0.908727726333;PDX1:-0.913120190617;FOXO1,3,4:-0.915089736795;BPTF:-0.91922438178;RFX2..5_RFXANK_RFXAP:-0.939590860792;NFY{A,B,C}:-0.988808988078;BREu{core}:-1.05555527451;STAT1,3:-1.10212059942;ZBTB16:-1.14157535486;FOXP1:-1.16892142254;CDX1,2,4:-1.26234617592;RBPJ:-1.27085314252 | |top_motifs=GTF2A1,2:1.68901389041;PPARG:1.59680280157;HES1:1.42240566766;ALX4:1.37870629012;GCM1,2:1.31082007168;TFCP2:1.28034848445;SRF:1.27650379009;NFE2L1:1.21414020288;HOX{A5,B5}:1.18642020997;NFATC1..3:1.11307246573;ZBTB6:1.10869438157;HIF1A:1.08624616863;TFAP4:1.06074887671;GLI1..3:1.04009749807;HMX1:1.03386536683;ZIC1..3:1.03136861894;ZNF238:1.03113909429;EBF1:0.983439205664;MAFB:0.96685724127;IKZF1:0.955934063997;TLX1..3_NFIC{dimer}:0.951594712793;ZNF148:0.929889233444;ONECUT1,2:0.912720706221;TBX4,5:0.900887379821;ZNF423:0.860884721056;EN1,2:0.855339333353;TFAP2{A,C}:0.848803888654;NKX2-2,8:0.834970449565;CRX:0.809437276502;LHX3,4:0.804688288984;TAL1_TCF{3,4,12}:0.741630838535;SMAD1..7,9:0.723000273971;TP53:0.716644572205;NKX3-1:0.703836124948;NANOG{mouse}:0.702259341841;FOX{I1,J2}:0.673496140344;ATF6:0.6535125881;VSX1,2:0.636947863434;SOX17:0.636546291219;PAX5:0.617403099631;TEAD1:0.602378593736;POU3F1..4:0.586707468807;PAX1,9:0.563931252517;SPZ1:0.554544960484;ARID5B:0.534152408698;TBP:0.52685551981;KLF4:0.50051732044;NFE2L2:0.476106816089;HMGA1,2:0.475797967637;REST:0.464581251256;EVI1:0.459698928179;CDC5L:0.459471269188;HSF1,2:0.452797396418;XBP1:0.43043587965;BACH2:0.422276582375;STAT5{A,B}:0.419581602252;HAND1,2:0.416376412385;XCPE1{core}:0.40065751112;FOSL2:0.388705072851;GTF2I:0.387559451943;FOS_FOS{B,L1}_JUN{B,D}:0.384329533416;POU1F1:0.383492669563;LEF1_TCF7_TCF7L1,2:0.380392360405;POU2F1..3:0.375281383125;UFEwm:0.357883525451;MTE{core}:0.356861315421;NFIL3:0.353148211416;ELK1,4_GABP{A,B1}:0.307248924595;AR:0.305628931631;AHR_ARNT_ARNT2:0.291954465664;GZF1:0.289314062365;HLF:0.289035347759;POU6F1:0.287400959758;ZNF384:0.284024916154;PRDM1:0.273604494494;JUN:0.26633588367;PATZ1:0.264756474327;SOX{8,9,10}:0.261216323197;NKX3-2:0.260629437703;NR3C1:0.242135415017;TFAP2B:0.236765049976;MZF1:0.221783004113;MAZ:0.208362372595;HIC1:0.205585407818;FOXL1:0.197059003524;MYFfamily:0.19419508387;PBX1:0.191743597552;MYBL2:0.183974452484;CEBPA,B_DDIT3:0.179959360463;GATA4:0.172238593501;GFI1B:0.162552904046;FOXQ1:0.15174345007;RXR{A,B,G}:0.145322825607;PRRX1,2:0.125840237611;HNF1A:0.125350758503;NHLH1,2:0.122184305626;NR1H4:0.110228849802;ESR1:0.10453695999;MEF2{A,B,C,D}:0.100996652276;ADNP_IRX_SIX_ZHX:0.0870226698974;ALX1:0.0737122747272;PAX8:0.0731823874031;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0717165083441;NFE2:0.0334049085001;NFKB1_REL_RELA:-0.00517432406802;ETS1,2:-0.0382745565966;SOX2:-0.0395052965767;YY1:-0.0582017945675;bHLH_family:-0.0648573030063;ZFP161:-0.0889737823534;SP1:-0.0958810721264;TLX2:-0.110996746838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.12467045729;RFX1:-0.126688919191;NFIX:-0.138478758338;MTF1:-0.140544903947;DBP:-0.144575695478;ELF1,2,4:-0.147800264207;PAX3,7:-0.195674646357;FOXM1:-0.203834310826;NANOG:-0.209681334858;ZNF143:-0.211424611444;GFI1:-0.215086525213;PAX2:-0.216290964562;GATA6:-0.217641996947;RUNX1..3:-0.219651945852;RREB1:-0.235159796255;NRF1:-0.238938239863;MED-1{core}:-0.256846556723;POU5F1:-0.261488355745;SPIB:-0.278918566087;EGR1..3:-0.294141787632;AIRE:-0.307764684007;TEF:-0.311126341129;STAT2,4,6:-0.314675794825;RXRA_VDR{dimer}:-0.316879409459;NR5A1,2:-0.319819331716;EP300:-0.33593581795;HBP1_HMGB_SSRP1_UBTF:-0.337151801075;TGIF1:-0.337622004951;ESRRA:-0.339888949766;SPI1:-0.344209699948;NKX2-3_NKX2-5:-0.348682624827;MYB:-0.358999945258;HNF4A_NR2F1,2:-0.366784422531;TFDP1:-0.367163640774;SOX5:-0.367642959697;TOPORS:-0.42801836061;LMO2:-0.484589084519;ATF5_CREB3:-0.50061062129;FOX{D1,D2}:-0.516287014978;HOX{A4,D4}:-0.532406519347;RORA:-0.546415305325;CREB1:-0.551495848324;FOX{F1,F2,J1}:-0.560251905771;ZEB1:-0.562824792602;NKX2-1,4:-0.568252746797;SNAI1..3:-0.587161846609;DMAP1_NCOR{1,2}_SMARC:-0.595432100476;ATF2:-0.61732760979;FOXP3:-0.619414214028;ATF4:-0.637243930958;OCT4_SOX2{dimer}:-0.653870222501;PAX6:-0.660639630581;NR6A1:-0.664765395664;SREBF1,2:-0.688848279602;HOXA9_MEIS1:-0.71148669743;FOXN1:-0.718584370106;IKZF2:-0.730225920179;T:-0.73934196567;HOX{A6,A7,B6,B7}:-0.74738599425;IRF1,2:-0.762283850606;MYOD1:-0.766017787633;PITX1..3:-0.770470596635;FOXD3:-0.829360030911;NKX6-1,2:-0.830027491406;CUX2:-0.834711440457;IRF7:-0.846702400398;E2F1..5:-0.896074635382;PAX4:-0.903870729391;FOXA2:-0.908727726333;PDX1:-0.913120190617;FOXO1,3,4:-0.915089736795;BPTF:-0.91922438178;RFX2..5_RFXANK_RFXAP:-0.939590860792;NFY{A,B,C}:-0.988808988078;BREu{core}:-1.05555527451;STAT1,3:-1.10212059942;ZBTB16:-1.14157535486;FOXP1:-1.16892142254;CDX1,2,4:-1.26234617592;RBPJ:-1.27085314252 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11284-116I6;search_select_hide=table117:FF:11284-116I6 | |||
}} | }} | ||
Latest revision as of 16:30, 3 June 2020
| Name: | Smooth Muscle Cells - Brachiocephalic, donor1 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11086 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11086
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11086
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.811 |
| 10 | 10 | 0.326 |
| 100 | 100 | 0.496 |
| 101 | 101 | 0.731 |
| 102 | 102 | 0.79 |
| 103 | 103 | 0.196 |
| 104 | 104 | 0.406 |
| 105 | 105 | 0.967 |
| 106 | 106 | 0.0173 |
| 107 | 107 | 0.0311 |
| 108 | 108 | 0.842 |
| 109 | 109 | 0.127 |
| 11 | 11 | 0.109 |
| 110 | 110 | 0.325 |
| 111 | 111 | 0.871 |
| 112 | 112 | 0.704 |
| 113 | 113 | 0.109 |
| 114 | 114 | 0.157 |
| 115 | 115 | 0.306 |
| 116 | 116 | 0.052 |
| 117 | 117 | 0.789 |
| 118 | 118 | 0.992 |
| 119 | 119 | 0.537 |
| 12 | 12 | 0.797 |
| 120 | 120 | 0.16 |
| 121 | 121 | 0.783 |
| 122 | 122 | 0.849 |
| 123 | 123 | 0.014 |
| 124 | 124 | 0.602 |
| 125 | 125 | 0.294 |
| 126 | 126 | 0.743 |
| 127 | 127 | 0.636 |
| 128 | 128 | 0.0891 |
| 129 | 129 | 0.995 |
| 13 | 13 | 0.538 |
| 130 | 130 | 0.303 |
| 131 | 131 | 0.185 |
| 132 | 132 | 0.774 |
| 133 | 133 | 0.725 |
| 134 | 134 | 0.177 |
| 135 | 135 | 0.0133 |
| 136 | 136 | 0.991 |
| 137 | 137 | 0.502 |
| 138 | 138 | 0.21 |
| 139 | 139 | 0.174 |
| 14 | 14 | 0.582 |
| 140 | 140 | 0.845 |
| 141 | 141 | 0.233 |
| 142 | 142 | 0.704 |
| 143 | 143 | 0.00659 |
| 144 | 144 | 0.752 |
| 145 | 145 | 0.142 |
| 146 | 146 | 0.845 |
| 147 | 147 | 0.127 |
| 148 | 148 | 0.834 |
| 149 | 149 | 0.0111 |
| 15 | 15 | 0.69 |
| 150 | 150 | 0.153 |
| 151 | 151 | 0.468 |
| 152 | 152 | 0.00939 |
| 153 | 153 | 0.925 |
| 154 | 154 | 0.769 |
| 155 | 155 | 0.0853 |
| 156 | 156 | 0.868 |
| 157 | 157 | 0.786 |
| 158 | 158 | 0.0129 |
| 159 | 159 | 0.33 |
| 16 | 16 | 0.193 |
| 160 | 160 | 0.145 |
| 161 | 161 | 0.756 |
| 162 | 162 | 0.796 |
| 163 | 163 | 0.996 |
| 164 | 164 | 0.46 |
| 165 | 165 | 0.439 |
| 166 | 166 | 0.554 |
| 167 | 167 | 0.624 |
| 168 | 168 | 0.433 |
| 169 | 169 | 0.0867 |
| 17 | 17 | 0.257 |
| 18 | 18 | 0.0599 |
| 19 | 19 | 0.0519 |
| 2 | 2 | 0.193 |
| 20 | 20 | 0.36 |
| 21 | 21 | 0.369 |
| 22 | 22 | 0.188 |
| 23 | 23 | 0.0534 |
| 24 | 24 | 0.204 |
| 25 | 25 | 0.376 |
| 26 | 26 | 0.468 |
| 27 | 27 | 0.635 |
| 28 | 28 | 0.164 |
| 29 | 29 | 0.547 |
| 3 | 3 | 0.586 |
| 30 | 30 | 0.339 |
| 31 | 31 | 0.561 |
| 32 | 32 | 5.07616e-5 |
| 33 | 33 | 0.865 |
| 34 | 34 | 0.286 |
| 35 | 35 | 0.514 |
| 36 | 36 | 0.354 |
| 37 | 37 | 0.0978 |
| 38 | 38 | 0.813 |
| 39 | 39 | 0.301 |
| 4 | 4 | 0.703 |
| 40 | 40 | 0.626 |
| 41 | 41 | 0.553 |
| 42 | 42 | 0.711 |
| 43 | 43 | 0.324 |
| 44 | 44 | 0.437 |
| 45 | 45 | 0.188 |
| 46 | 46 | 0.167 |
| 47 | 47 | 0.61 |
| 48 | 48 | 0.379 |
| 49 | 49 | 0.817 |
| 5 | 5 | 0.675 |
| 50 | 50 | 0.335 |
| 51 | 51 | 0.813 |
| 52 | 52 | 0.691 |
| 53 | 53 | 0.48 |
| 54 | 54 | 0.462 |
| 55 | 55 | 0.272 |
| 56 | 56 | 0.551 |
| 57 | 57 | 0.614 |
| 58 | 58 | 0.698 |
| 59 | 59 | 0.0824 |
| 6 | 6 | 0.922 |
| 60 | 60 | 0.645 |
| 61 | 61 | 0.774 |
| 62 | 62 | 0.75 |
| 63 | 63 | 0.162 |
| 64 | 64 | 0.87 |
| 65 | 65 | 0.247 |
| 66 | 66 | 0.964 |
| 67 | 67 | 0.257 |
| 68 | 68 | 0.451 |
| 69 | 69 | 0.794 |
| 7 | 7 | 0.761 |
| 70 | 70 | 0.0502 |
| 71 | 71 | 0.353 |
| 72 | 72 | 0.802 |
| 73 | 73 | 0.00626 |
| 74 | 74 | 0.864 |
| 75 | 75 | 0.527 |
| 76 | 76 | 0.881 |
| 77 | 77 | 0.00603 |
| 78 | 78 | 0.925 |
| 79 | 79 | 0.0584 |
| 8 | 8 | 0.213 |
| 80 | 80 | 0.316 |
| 81 | 81 | 0.547 |
| 82 | 82 | 0.478 |
| 83 | 83 | 0.694 |
| 84 | 84 | 0.862 |
| 85 | 85 | 0.033 |
| 86 | 86 | 0.368 |
| 87 | 87 | 0.0163 |
| 88 | 88 | 0.0604 |
| 89 | 89 | 0.0322 |
| 9 | 9 | 0.206 |
| 90 | 90 | 0.563 |
| 91 | 91 | 0.717 |
| 92 | 92 | 0.36 |
| 93 | 93 | 0.974 |
| 94 | 94 | 0.744 |
| 95 | 95 | 0.253 |
| 96 | 96 | 0.908 |
| 97 | 97 | 0.569 |
| 98 | 98 | 0.689 |
| 99 | 99 | 0.00524 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11086
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000169 human smooth muscle cell of the brachiocephalic vasculature sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002589 (smooth muscle cell of the brachiocephalic vasculature)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001529 (brachiocephalic artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0007204 (brachiocephalic vasculature)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000169 (human smooth muscle cell of the brachiocephalic vasculature sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
