FF:10704-109H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005057 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007976;DRR008848;DRZ000273;DRZ001658;DRZ011623;DRZ013008 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002320,CL:0002371,CL:0000766,CL:0000219,CL:0000054,CL:0000738,CL:0000255,CL:0002092,CL:0000137,CL:0000092 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:7,DOID:201,DOID:0060100,DOID:200,DOID:4305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100583,FF:0100372,FF:0100969 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100583 | |fonse_cell_line=FF:0100583 | ||
|fonse_cell_line_closure=FF:0100583 | |fonse_cell_line_closure=FF:0100583 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteoclastoma%2520cell%2520line%253aHs%2520706%252eT.CNhs11835.10704-109H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteoclastoma%2520cell%2520line%253aHs%2520706%252eT.CNhs11835.10704-109H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteoclastoma%2520cell%2520line%253aHs%2520706%252eT.CNhs11835.10704-109H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/osteoclastoma%2520cell%2520line%253aHs%2520706%252eT.CNhs11835.10704-109H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/osteoclastoma%2520cell%2520line%253aHs%2520706%252eT.CNhs11835.10704-109H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10704-109H2 | |id=FF:10704-109H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100969 | ||
|is_obsolete= | |||
|library_id=CNhs11835 | |||
|library_id_phase_based=2:CNhs11835 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10704 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10704 | |||
|name=osteoclastoma cell line:Hs 706.T | |name=osteoclastoma cell line:Hs 706.T | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11835,LSID829,release010,COMPLETED | |profile_hcage=CNhs11835,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0701569113388275,0,0,0,0,0.0858761895155187,0,-0.063714076582577,-0.08122743384001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0928712092534771,0,0.123097109800952,0,0,0,0.0423559264095972,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.77509811098707,0,0.0793889738383342,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.0433214614350496,0,0,0.0429701954645578,0.140313822677655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0807943770770641,0,0,0,0,0,0,0.197996008172973,0,0,0,-0.0584468268118252,-0.0100212759589368,0,0,0,0.140313822677655,0.0422784714399483,0.0626989259360365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0262166825836336,0,0,0,0,0.0635146803167486,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0422784714399483,0,0.140313822677655,0,0,0,0,0,0,0,0,0,0.0840755368963879,0,-0.227891999150104,-0.143515142523472,0,0,0.214848483068229,0,0.246194219601905,0,0,0,0,0,0,0,0.673924817734936,0,-0.0504125515893149,0,0,0,0,0,-0.165158408220753,0,-0.0511609513485575,-0.0683442610773682,0,0,0,0,0.0010923687414345,0,-0.120879483793741,0.380711488903593,0.0548727813227501,-0.0801105613645526,-0.04680465889238,0,0,0,-0.221545415340807,-0.554947256165878,0,0,0.599434527713055,-0.015722412469683,0,0,-0.391044581551635,0,0.206612307643904,0.210893296178889,0,-0.0376853254560469,0,0,0,0,0,0,0,0,0,0,0,0.388925019820648,-0.0807943770770641,0,0,0,0,0.0927129651906395,0,0,-0.373286155956567,0.0616224356970915,0,-0.177826843072133,0,0.262237836959389,0.0121838367430386,-0.471845335936702,0.216798138854275,-0.147401849371139,0.212370533924017,0.079292790941145,-0.048129577832395,0.37053003927876,-0.082293473795382,-0.183436613363578,-0.0266925100224082,0.405414383692659,-0.207552830887645,0,0,0,-0.200516223268127,0,0,0.225487811782454,0.023994577233971,0.10768887266959,0.288919389834888,0.0438328102115576,-0.402663232210162,0.0306243828821568,0.288931884678072,0.0641765212956895,0.536570781836412,0,0,0.0335227767514244,-0.0562518221737483,-0.45465769492537,-0.0511986092093766,0.0740943585666685,-0.237783242209076,0.262910151104584,0,0.0362393870912614,0.0334661500098163,0,0.229041448364534,0.196320880115658,0,0.0657834531650977,0,0,0,-0.2928306111315,-0.0225216914915075,0.01333865804636,0,-0.0348463599691836,0.0150778657307988,-0.0388008545832571,0,-0.236376344802248,-0.0618569389331508,0.03318025982066,-0.123840108428124,0,-0.0323242268882316,0.177442640030212,0.0848510209005302,-0.0200425519178736,-0.0584468268118252,-0.213501482237072,0.0936640329371753,0.158311367187741,0.249121055563468,0,-0.0881268324752877,0,0.786384095343693,0.00299180146244726,0.0457102714039059,0.255872171311032,0,0.292396430202081,0,-0.203584079804672,0,-0.0779214459793696,0.106209002209024,0.125338189388616,-0.113448282769182,0,0.110088066018601,0.787203354797475,0,0,0,0.140313822677655,0.251985170139225,0.197996008172973,-0.010474301127657,0.0542645644605854,0,0.0840243505886683,0,0,0.228550372970388,0.010718181837516,0,-0.0449223008831175,-0.145771256986386,-0.140784383968285,-0.115971073434934,0.140313822677655,0,0.0367895950912469,0,0.140313822677655,-0.203575810344166,0.140313822677655,-0.102812872419975,0.429163591597216,0,0.220019327653901,0,0,-0.037213943287521,0,0.175578504611783,0,0,-0.249881296598824,0,0,0,0,-0.0148135501198061,0,0,0,0,0,0,0,0.0447671223041246,-0.214519507538793,0,0.186873875021738,0,0,0,0,0,0,0,0.331254412181952,0.771947648656508,0.0380752043449631,-0.12301741567642,0,0,0,0,-0.07540957987582,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.399986682655998,0,0,0,0.125397851872073,0,0,0,0.0098263461440259,0.0208658329195384,0,0,0.014712580295884,0,0.0515024327469908,-0.0815818795468414,0,-0.148085559681789,0.145435936246156,0.0821206394322727,0,0,-0.261347131789888,0,0,-0.161839812654923,-0.0823702229656663,0,0.0425210217905057,0,0,0,0,0,0,0.302655939138903,0,0,0,0,0,0,0,0,0,0,0,-0.102822355298515,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.0832426734304419,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,0.0433214614350496,0,0,0,0.140313822677655,-0.16245486768002,0,0,0.0538922799884383,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.063714076582577,0,0,0,0,0,0,0,-0.134519475528436,0,0,0,0,-0.113884373708977,0,0,0,0.0355174378884983,0,0.0858761895155187,0,0,0,0,0,0.0443544153040678,0.0701569113388275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646506541380934,0.0601854983126117,0,0,0,0,0.215217634709736,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0617291823160375,0,0,0,0,0,0,0,0.0423559264095972,0,0,-0.0920328098005262,0,0,0,0,0,0,0.0158073236412295,0.841777652682774,0.095867377638197,0,0,0,0.146790554254477,0,0,0,0,0.0735364352587534,0,0,0,0,0,0,0,0,0.140313822677655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0928712092534771,0,0,0,0,0,0,0,0,0,0,0,0,0.0701569113388275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0361455480634109,0.246194219601905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0602953544090163,0,0,0,0.118168182524909,0,0,0,0,0,0,0,0,0.246194219601905,0,0,0,0,0,0,0,0,0,0,0,0.140313822677655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140313822677655,0,0,0,0.0580027902766154,0,0,0,0,0,0,0,0,0.77509811098707,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140313822677655,-0.0870723852887024,0,0,0,0,0.198557108940986,0,0,0,0,0,0,0,-0.087428497801853,0,0,0.140313822677655,0,0,0,0,0,0,0,0,0,0,0.311016955680798,0,0,0.170920104209153,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.03806092035369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000264190360135586,0.0635146803167486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=18.14346 | |rna_weight_ug=18.14346 | ||
|sample_age=16 | |sample_age=16 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-7447 | |sample_cell_catalog=CRL-7447 | ||
|sample_cell_line=Hs 706.T | |sample_cell_line=Hs 706.T | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.90024673910627e-215!GO:0005737;cytoplasm;2.25045276682453e-178!GO:0043226;organelle;9.31094853357678e-173!GO:0043229;intracellular organelle;1.81447622441419e-172!GO:0043231;intracellular membrane-bound organelle;1.61920921601098e-169!GO:0043227;membrane-bound organelle;3.54559646297303e-169!GO:0044422;organelle part;6.0091633008027e-128!GO:0044446;intracellular organelle part;1.35141370416423e-126!GO:0044444;cytoplasmic part;1.63367764448754e-122!GO:0032991;macromolecular complex;7.98925473480524e-88!GO:0005515;protein binding;2.09381409932007e-81!GO:0043170;macromolecule metabolic process;4.44182690118573e-73!GO:0044237;cellular metabolic process;6.88264045020698e-73!GO:0044238;primary metabolic process;7.98044948218157e-73!GO:0030529;ribonucleoprotein complex;1.43943530137982e-66!GO:0043233;organelle lumen;2.94128160705076e-64!GO:0031974;membrane-enclosed lumen;2.94128160705076e-64!GO:0005634;nucleus;1.54478804492417e-62!GO:0044428;nuclear part;1.58683941998949e-61!GO:0005739;mitochondrion;1.04482792236764e-53!GO:0003723;RNA binding;1.07945304229044e-50!GO:0019538;protein metabolic process;1.33314249940444e-50!GO:0016043;cellular component organization and biogenesis;2.12410354273983e-48!GO:0031090;organelle membrane;2.6054217673291e-47!GO:0043234;protein complex;3.33121034322875e-47!GO:0033036;macromolecule localization;6.54653461627084e-46!GO:0044260;cellular macromolecule metabolic process;4.8402191125605e-45!GO:0015031;protein transport;7.44731080515817e-45!GO:0044267;cellular protein metabolic process;2.00517992820988e-44!GO:0008104;protein localization;9.92052836847901e-43!GO:0045184;establishment of protein localization;1.03334923573312e-42!GO:0043283;biopolymer metabolic process;6.23928229620839e-41!GO:0005840;ribosome;2.12296975556064e-40!GO:0046907;intracellular transport;3.59714953216857e-38!GO:0031981;nuclear lumen;8.57801003833857e-38!GO:0006412;translation;3.30004501529535e-37!GO:0044429;mitochondrial part;1.37922396976256e-35!GO:0006396;RNA processing;3.56859664022352e-35!GO:0003735;structural constituent of ribosome;8.81360640212891e-35!GO:0031967;organelle envelope;1.06229664198849e-33!GO:0031975;envelope;1.73534157267286e-33!GO:0005829;cytosol;8.47103250829259e-33!GO:0033279;ribosomal subunit;3.56808736701652e-31!GO:0009059;macromolecule biosynthetic process;7.3108966796646e-31!GO:0010467;gene expression;1.29451195939105e-30!GO:0016071;mRNA metabolic process;1.90783273011163e-30!GO:0043228;non-membrane-bound organelle;1.49943417495118e-29!GO:0043232;intracellular non-membrane-bound organelle;1.49943417495118e-29!GO:0006886;intracellular protein transport;1.99398338447452e-29!GO:0009058;biosynthetic process;6.7038234490969e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.94953425617754e-29!GO:0006996;organelle organization and biogenesis;9.35980965232416e-29!GO:0008380;RNA splicing;1.87323922127921e-28!GO:0065003;macromolecular complex assembly;1.54934718182361e-26!GO:0051649;establishment of cellular localization;2.55785529648182e-26!GO:0051641;cellular localization;2.9217440512086e-26!GO:0006397;mRNA processing;3.89884330937772e-26!GO:0044249;cellular biosynthetic process;4.50395493517498e-26!GO:0005654;nucleoplasm;5.40506973508629e-24!GO:0005740;mitochondrial envelope;1.82039708087598e-23!GO:0022607;cellular component assembly;2.44521769316641e-23!GO:0000166;nucleotide binding;1.03486347116911e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.34093539191399e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.76419484376641e-22!GO:0031966;mitochondrial membrane;9.88655786407451e-22!GO:0007049;cell cycle;1.32262616436207e-21!GO:0019866;organelle inner membrane;1.42442442564213e-21!GO:0012505;endomembrane system;5.71258455839344e-21!GO:0006259;DNA metabolic process;1.7772022303964e-20!GO:0005681;spliceosome;2.73069802662921e-20!GO:0005783;endoplasmic reticulum;3.40995871001256e-20!GO:0006119;oxidative phosphorylation;3.63322395627847e-20!GO:0044451;nucleoplasm part;1.10132488073782e-19!GO:0005743;mitochondrial inner membrane;1.84575515199056e-19!GO:0006457;protein folding;2.73750843306174e-19!GO:0006512;ubiquitin cycle;9.80539144859011e-19!GO:0016462;pyrophosphatase activity;1.57436896618351e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.86765890737498e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.80836050101367e-18!GO:0044455;mitochondrial membrane part;2.84079568317192e-18!GO:0017111;nucleoside-triphosphatase activity;4.94454959540332e-18!GO:0044445;cytosolic part;7.77120798640516e-18!GO:0008134;transcription factor binding;7.93930157510176e-18!GO:0032553;ribonucleotide binding;1.28439920819596e-17!GO:0032555;purine ribonucleotide binding;1.28439920819596e-17!GO:0005794;Golgi apparatus;1.79896997112102e-17!GO:0017076;purine nucleotide binding;3.78375308389826e-17!GO:0015934;large ribosomal subunit;5.69503656502979e-17!GO:0044432;endoplasmic reticulum part;6.11139948820572e-17!GO:0016874;ligase activity;6.28434052815634e-17!GO:0022402;cell cycle process;8.71897913002774e-17!GO:0048770;pigment granule;1.25345373163967e-16!GO:0042470;melanosome;1.25345373163967e-16!GO:0043412;biopolymer modification;1.65155919140869e-16!GO:0000278;mitotic cell cycle;2.45860742382596e-16!GO:0048193;Golgi vesicle transport;2.85518722811797e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.9739954651278e-16!GO:0019941;modification-dependent protein catabolic process;8.25299302171037e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.25299302171037e-16!GO:0044257;cellular protein catabolic process;8.69205637825958e-16!GO:0006511;ubiquitin-dependent protein catabolic process;9.17636780646525e-16!GO:0044265;cellular macromolecule catabolic process;1.23039016499029e-15!GO:0051082;unfolded protein binding;1.67351438704586e-15!GO:0022618;protein-RNA complex assembly;2.60732349758426e-15!GO:0043285;biopolymer catabolic process;2.86585720566947e-15!GO:0015935;small ribosomal subunit;2.96908517678929e-15!GO:0006464;protein modification process;2.9920787703443e-15!GO:0005746;mitochondrial respiratory chain;8.24287788278828e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.01576305246702e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.0978385653442e-14!GO:0005524;ATP binding;1.0981790821184e-14!GO:0031980;mitochondrial lumen;1.57616624168732e-14!GO:0005759;mitochondrial matrix;1.57616624168732e-14!GO:0006605;protein targeting;1.7640932229961e-14!GO:0003676;nucleic acid binding;2.9827791501827e-14!GO:0032559;adenyl ribonucleotide binding;3.13373721787958e-14!GO:0030163;protein catabolic process;3.13373721787958e-14!GO:0016192;vesicle-mediated transport;3.51149632414518e-14!GO:0009057;macromolecule catabolic process;5.75742039550567e-14!GO:0005730;nucleolus;8.30155922937939e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.30155922937939e-14!GO:0003954;NADH dehydrogenase activity;8.30155922937939e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.30155922937939e-14!GO:0030554;adenyl nucleotide binding;1.23732638907709e-13!GO:0043687;post-translational protein modification;1.29585915503277e-13!GO:0000087;M phase of mitotic cell cycle;2.19866027254446e-13!GO:0007067;mitosis;2.69798385962535e-13!GO:0016070;RNA metabolic process;3.18294172469581e-13!GO:0051186;cofactor metabolic process;3.70695869712979e-13!GO:0008135;translation factor activity, nucleic acid binding;6.861324253536e-13!GO:0051301;cell division;7.97923529861156e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.15581461464311e-12!GO:0005793;ER-Golgi intermediate compartment;2.44235313011033e-12!GO:0005761;mitochondrial ribosome;3.45076998772275e-12!GO:0000313;organellar ribosome;3.45076998772275e-12!GO:0006974;response to DNA damage stimulus;4.68844469448578e-12!GO:0044248;cellular catabolic process;5.56121902310818e-12!GO:0030964;NADH dehydrogenase complex (quinone);5.56121902310818e-12!GO:0045271;respiratory chain complex I;5.56121902310818e-12!GO:0005747;mitochondrial respiratory chain complex I;5.56121902310818e-12!GO:0008639;small protein conjugating enzyme activity;7.728817374876e-12!GO:0042775;organelle ATP synthesis coupled electron transport;7.728817374876e-12!GO:0042773;ATP synthesis coupled electron transport;7.728817374876e-12!GO:0003712;transcription cofactor activity;9.50564599023615e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.10458029511384e-11!GO:0004842;ubiquitin-protein ligase activity;1.47461058526504e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.71559980893312e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.14294408004371e-11!GO:0019787;small conjugating protein ligase activity;3.3435709875054e-11!GO:0022403;cell cycle phase;3.35631575447127e-11!GO:0005635;nuclear envelope;3.51696916943419e-11!GO:0005789;endoplasmic reticulum membrane;6.37679672547187e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.83112794542942e-11!GO:0006913;nucleocytoplasmic transport;9.27691525179082e-11!GO:0012501;programmed cell death;9.52165954790057e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.12129529297375e-10!GO:0000375;RNA splicing, via transesterification reactions;1.12129529297375e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.12129529297375e-10!GO:0051169;nuclear transport;1.60448641310458e-10!GO:0006732;coenzyme metabolic process;1.93103709063906e-10!GO:0006915;apoptosis;2.15020224345004e-10!GO:0009055;electron carrier activity;2.62938032235247e-10!GO:0051726;regulation of cell cycle;2.85185808174127e-10!GO:0044453;nuclear membrane part;3.39531837894022e-10!GO:0000074;regulation of progression through cell cycle;3.43318718248552e-10!GO:0016881;acid-amino acid ligase activity;3.55290797763353e-10!GO:0031965;nuclear membrane;3.74970235530313e-10!GO:0015630;microtubule cytoskeleton;4.61159719628713e-10!GO:0008219;cell death;5.99582739778709e-10!GO:0016265;death;5.99582739778709e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.41035412532261e-10!GO:0003743;translation initiation factor activity;7.21756721877584e-10!GO:0048523;negative regulation of cellular process;1.40464959768424e-09!GO:0006281;DNA repair;2.05632946210762e-09!GO:0005788;endoplasmic reticulum lumen;2.15857648391408e-09!GO:0000279;M phase;2.64862077064364e-09!GO:0006366;transcription from RNA polymerase II promoter;2.65088852738802e-09!GO:0005768;endosome;3.07698834629017e-09!GO:0006461;protein complex assembly;3.59982390010615e-09!GO:0042623;ATPase activity, coupled;3.63210797569433e-09!GO:0006413;translational initiation;3.63870273602663e-09!GO:0016887;ATPase activity;3.72344878671921e-09!GO:0051276;chromosome organization and biogenesis;4.15897934707084e-09!GO:0008565;protein transporter activity;4.31945234507413e-09!GO:0009259;ribonucleotide metabolic process;4.41141575337606e-09!GO:0016604;nuclear body;6.35030664614681e-09!GO:0005694;chromosome;6.9045632670739e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.62042865732449e-09!GO:0017038;protein import;7.62042865732449e-09!GO:0006446;regulation of translational initiation;7.91422227801014e-09!GO:0003714;transcription corepressor activity;1.17475035376276e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.38515026673509e-08!GO:0009150;purine ribonucleotide metabolic process;1.40560836632e-08!GO:0030120;vesicle coat;1.75442224282968e-08!GO:0030662;coated vesicle membrane;1.75442224282968e-08!GO:0006163;purine nucleotide metabolic process;2.60303363559757e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.63688031172679e-08!GO:0009719;response to endogenous stimulus;3.06587082248664e-08!GO:0048519;negative regulation of biological process;4.1073270930976e-08!GO:0009260;ribonucleotide biosynthetic process;4.77626878517365e-08!GO:0042254;ribosome biogenesis and assembly;5.35217808963695e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.37104731557591e-08!GO:0050794;regulation of cellular process;5.4183417924164e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.86880576643663e-08!GO:0009141;nucleoside triphosphate metabolic process;6.20858757038769e-08!GO:0044431;Golgi apparatus part;6.83970366708935e-08!GO:0005643;nuclear pore;6.92695689134127e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.31778457202451e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.31778457202451e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;8.85627823050243e-08!GO:0015986;ATP synthesis coupled proton transport;9.18611296415009e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.18611296415009e-08!GO:0006164;purine nucleotide biosynthetic process;1.00901826470183e-07!GO:0032446;protein modification by small protein conjugation;1.09342212621124e-07!GO:0044427;chromosomal part;1.18014737697246e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.27350229599335e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.27350229599335e-07!GO:0003924;GTPase activity;1.37700278331083e-07!GO:0006793;phosphorus metabolic process;1.42438045911061e-07!GO:0006796;phosphate metabolic process;1.42438045911061e-07!GO:0016567;protein ubiquitination;1.77759016991817e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.80794727067331e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.80794727067331e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.82509079839587e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.82509079839587e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.82509079839587e-07!GO:0016607;nuclear speck;1.83404410491056e-07!GO:0000151;ubiquitin ligase complex;1.87188692097468e-07!GO:0065002;intracellular protein transport across a membrane;2.68833868783098e-07!GO:0019829;cation-transporting ATPase activity;2.69362655704592e-07!GO:0006323;DNA packaging;2.71777823318273e-07!GO:0005667;transcription factor complex;2.77281314593753e-07!GO:0043038;amino acid activation;2.77419074738076e-07!GO:0006418;tRNA aminoacylation for protein translation;2.77419074738076e-07!GO:0043039;tRNA aminoacylation;2.77419074738076e-07!GO:0006260;DNA replication;2.89064643235476e-07!GO:0048475;coated membrane;3.73156516975943e-07!GO:0030117;membrane coat;3.73156516975943e-07!GO:0009056;catabolic process;3.87599792825294e-07!GO:0006399;tRNA metabolic process;4.24449658389611e-07!GO:0005798;Golgi-associated vesicle;4.85894493681575e-07!GO:0046034;ATP metabolic process;4.85894493681575e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.03535868028304e-07!GO:0004386;helicase activity;5.571021333089e-07!GO:0016564;transcription repressor activity;6.61315042596212e-07!GO:0005819;spindle;6.64195298553158e-07!GO:0051188;cofactor biosynthetic process;6.67391227590326e-07!GO:0045786;negative regulation of progression through cell cycle;7.31219490977715e-07!GO:0046930;pore complex;7.49471136578596e-07!GO:0006754;ATP biosynthetic process;8.87780219014949e-07!GO:0006753;nucleoside phosphate metabolic process;8.87780219014949e-07!GO:0031252;leading edge;1.04726899927118e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.06664564030527e-06!GO:0006403;RNA localization;1.14017188446717e-06!GO:0050657;nucleic acid transport;1.27190217389971e-06!GO:0051236;establishment of RNA localization;1.27190217389971e-06!GO:0050658;RNA transport;1.27190217389971e-06!GO:0031988;membrane-bound vesicle;1.2726784632651e-06!GO:0009060;aerobic respiration;1.2847428611856e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.75807796164386e-06!GO:0044440;endosomal part;2.00586153782184e-06!GO:0010008;endosome membrane;2.00586153782184e-06!GO:0005773;vacuole;2.01439801422978e-06!GO:0051246;regulation of protein metabolic process;2.38241177367438e-06!GO:0051170;nuclear import;2.569203165876e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.63250663174937e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.72574560480933e-06!GO:0007005;mitochondrion organization and biogenesis;2.72574560480933e-06!GO:0005815;microtubule organizing center;2.80772662948995e-06!GO:0043566;structure-specific DNA binding;2.84247385396973e-06!GO:0006606;protein import into nucleus;2.93966019144237e-06!GO:0043623;cellular protein complex assembly;3.00778007302738e-06!GO:0005813;centrosome;3.05816809911964e-06!GO:0016310;phosphorylation;3.05966903219244e-06!GO:0008026;ATP-dependent helicase activity;3.07252281646723e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.75170074386374e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.16699758942826e-06!GO:0005770;late endosome;5.44092337975446e-06!GO:0016568;chromatin modification;5.51590665332846e-06!GO:0031982;vesicle;5.51590665332846e-06!GO:0043067;regulation of programmed cell death;5.97468432373787e-06!GO:0031410;cytoplasmic vesicle;6.11984892037106e-06!GO:0045333;cellular respiration;6.53128259594016e-06!GO:0000139;Golgi membrane;6.54604699439683e-06!GO:0003697;single-stranded DNA binding;7.19041789647809e-06!GO:0051789;response to protein stimulus;7.93510079335642e-06!GO:0006986;response to unfolded protein;7.93510079335642e-06!GO:0005525;GTP binding;8.62583594614048e-06!GO:0006099;tricarboxylic acid cycle;8.6364391292627e-06!GO:0046356;acetyl-CoA catabolic process;8.6364391292627e-06!GO:0051187;cofactor catabolic process;9.24297090652961e-06!GO:0042981;regulation of apoptosis;9.26617600070775e-06!GO:0045259;proton-transporting ATP synthase complex;1.04316647991751e-05!GO:0000245;spliceosome assembly;1.04867010637618e-05!GO:0031324;negative regulation of cellular metabolic process;1.07580895044774e-05!GO:0016740;transferase activity;1.08606008525888e-05!GO:0008361;regulation of cell size;1.10078074687413e-05!GO:0007010;cytoskeleton organization and biogenesis;1.13436791225679e-05!GO:0043069;negative regulation of programmed cell death;1.25163846635542e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.2612389448108e-05!GO:0009109;coenzyme catabolic process;1.31604709996469e-05!GO:0009108;coenzyme biosynthetic process;1.49908168340384e-05!GO:0006752;group transfer coenzyme metabolic process;1.50064130423699e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.50482518218209e-05!GO:0006613;cotranslational protein targeting to membrane;1.6239632882803e-05!GO:0006084;acetyl-CoA metabolic process;1.87622950592111e-05!GO:0000323;lytic vacuole;1.97452862197782e-05!GO:0005764;lysosome;1.97452862197782e-05!GO:0004298;threonine endopeptidase activity;2.03515610326191e-05!GO:0016049;cell growth;2.05523861016309e-05!GO:0016787;hydrolase activity;2.15239731571715e-05!GO:0030133;transport vesicle;2.40756037211223e-05!GO:0005769;early endosome;2.41336656406578e-05!GO:0050789;regulation of biological process;2.41459058003705e-05!GO:0019899;enzyme binding;2.4920132632016e-05!GO:0009117;nucleotide metabolic process;2.64964459525404e-05!GO:0030867;rough endoplasmic reticulum membrane;2.82026193509829e-05!GO:0051028;mRNA transport;3.25309283268467e-05!GO:0043066;negative regulation of apoptosis;3.25523779765478e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.39900145897812e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.463935490794e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.55546085581071e-05!GO:0065004;protein-DNA complex assembly;4.50805077720079e-05!GO:0016563;transcription activator activity;4.65841614257211e-05!GO:0005762;mitochondrial large ribosomal subunit;4.73929746578131e-05!GO:0000315;organellar large ribosomal subunit;4.73929746578131e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.58469802125653e-05!GO:0032561;guanyl ribonucleotide binding;5.59584468720766e-05!GO:0019001;guanyl nucleotide binding;5.59584468720766e-05!GO:0008654;phospholipid biosynthetic process;6.04320298150211e-05!GO:0001558;regulation of cell growth;6.86673064960347e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.37324590566271e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.61948134961826e-05!GO:0000785;chromatin;7.91509152493725e-05!GO:0005905;coated pit;7.93337916023071e-05!GO:0045454;cell redox homeostasis;8.633965078031e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.633965078031e-05!GO:0006916;anti-apoptosis;8.93542019601087e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.19950443501408e-05!GO:0051329;interphase of mitotic cell cycle;9.41471160786198e-05!GO:0009892;negative regulation of metabolic process;0.000100826948895921!GO:0016491;oxidoreductase activity;0.000105082674452818!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000105511764973996!GO:0007051;spindle organization and biogenesis;0.000112490277886496!GO:0008092;cytoskeletal protein binding;0.000113354152938426!GO:0006333;chromatin assembly or disassembly;0.000127432859265416!GO:0016481;negative regulation of transcription;0.000127432859265416!GO:0006364;rRNA processing;0.000131262479238437!GO:0005048;signal sequence binding;0.000178716211021117!GO:0030663;COPI coated vesicle membrane;0.000196528862378308!GO:0030126;COPI vesicle coat;0.000196528862378308!GO:0016072;rRNA metabolic process;0.00023811940136784!GO:0030036;actin cytoskeleton organization and biogenesis;0.000238175628204785!GO:0006891;intra-Golgi vesicle-mediated transport;0.000244647050350158!GO:0005874;microtubule;0.000250039038963108!GO:0003713;transcription coactivator activity;0.000251962970856508!GO:0008250;oligosaccharyl transferase complex;0.00026183004350369!GO:0016779;nucleotidyltransferase activity;0.000267036748219791!GO:0051325;interphase;0.000276379993660968!GO:0000075;cell cycle checkpoint;0.000296278437006474!GO:0043021;ribonucleoprotein binding;0.000302848431673927!GO:0005885;Arp2/3 protein complex;0.00031194002064027!GO:0004576;oligosaccharyl transferase activity;0.000325877702912282!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000325877702912282!GO:0030137;COPI-coated vesicle;0.000327192551928587!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00036395988891131!GO:0015399;primary active transmembrane transporter activity;0.00036395988891131!GO:0016859;cis-trans isomerase activity;0.000392348913264356!GO:0003724;RNA helicase activity;0.000393760128332329!GO:0051427;hormone receptor binding;0.000400414643357355!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00041714542949809!GO:0006612;protein targeting to membrane;0.000418142497943769!GO:0000775;chromosome, pericentric region;0.000428063506779595!GO:0016853;isomerase activity;0.00043596651386804!GO:0007243;protein kinase cascade;0.000462358848689465!GO:0015980;energy derivation by oxidation of organic compounds;0.000487674956488401!GO:0048522;positive regulation of cellular process;0.000511194538382186!GO:0044262;cellular carbohydrate metabolic process;0.000519794912306816!GO:0007050;cell cycle arrest;0.000556083009502534!GO:0051168;nuclear export;0.000627312203734903!GO:0048471;perinuclear region of cytoplasm;0.000634030097744343!GO:0006091;generation of precursor metabolites and energy;0.000741167716042232!GO:0035257;nuclear hormone receptor binding;0.00077112769044663!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00077250879998046!GO:0016044;membrane organization and biogenesis;0.000773404559887149!GO:0000314;organellar small ribosomal subunit;0.00081939111698586!GO:0005763;mitochondrial small ribosomal subunit;0.00081939111698586!GO:0040008;regulation of growth;0.000831425228722934!GO:0030029;actin filament-based process;0.00104373665150287!GO:0008022;protein C-terminus binding;0.00107145088094637!GO:0030132;clathrin coat of coated pit;0.00112044704991928!GO:0019222;regulation of metabolic process;0.00113449258356807!GO:0046474;glycerophospholipid biosynthetic process;0.00115503581827306!GO:0018196;peptidyl-asparagine modification;0.00116834565317598!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00116834565317598!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00116834565317598!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00119551502435074!GO:0006383;transcription from RNA polymerase III promoter;0.00127574035500607!GO:0003729;mRNA binding;0.00131133448067022!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00134737301539704!GO:0015631;tubulin binding;0.00136092991513557!GO:0001726;ruffle;0.00137749320686824!GO:0031072;heat shock protein binding;0.00139688394960158!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00141020821166768!GO:0030658;transport vesicle membrane;0.00148876114583008!GO:0019867;outer membrane;0.00156457198829456!GO:0007093;mitotic cell cycle checkpoint;0.0016082224289624!GO:0003899;DNA-directed RNA polymerase activity;0.00163614032066709!GO:0007088;regulation of mitosis;0.00165624686595818!GO:0004674;protein serine/threonine kinase activity;0.00165624686595818!GO:0051920;peroxiredoxin activity;0.00174172828360462!GO:0065009;regulation of a molecular function;0.00183147573309187!GO:0006839;mitochondrial transport;0.00184086602217195!GO:0042802;identical protein binding;0.00186915966842101!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00194757044792703!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00197898350201866!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00197898350201866!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00197898350201866!GO:0046489;phosphoinositide biosynthetic process;0.00198489588880618!GO:0051252;regulation of RNA metabolic process;0.00201499974682603!GO:0000059;protein import into nucleus, docking;0.00202598854857715!GO:0031968;organelle outer membrane;0.00203991280605966!GO:0006509;membrane protein ectodomain proteolysis;0.00207657227861066!GO:0033619;membrane protein proteolysis;0.00207657227861066!GO:0016197;endosome transport;0.00212889522127833!GO:0000776;kinetochore;0.00215742142554972!GO:0016363;nuclear matrix;0.00216819448909695!GO:0048487;beta-tubulin binding;0.00219388249563699!GO:0043681;protein import into mitochondrion;0.00225327309990719!GO:0043492;ATPase activity, coupled to movement of substances;0.00227895847942735!GO:0003690;double-stranded DNA binding;0.00252139416401567!GO:0030134;ER to Golgi transport vesicle;0.00254881918957383!GO:0007264;small GTPase mediated signal transduction;0.00281160732639737!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00283365932292057!GO:0007006;mitochondrial membrane organization and biogenesis;0.00286654239462242!GO:0005791;rough endoplasmic reticulum;0.00322002473558471!GO:0030176;integral to endoplasmic reticulum membrane;0.00330079744543145!GO:0006892;post-Golgi vesicle-mediated transport;0.00330079744543145!GO:0031543;peptidyl-proline dioxygenase activity;0.00334257863761967!GO:0008047;enzyme activator activity;0.00335801772033692!GO:0019843;rRNA binding;0.00343481748737492!GO:0000287;magnesium ion binding;0.00347761003969329!GO:0043284;biopolymer biosynthetic process;0.00348666324132933!GO:0005637;nuclear inner membrane;0.003710244540298!GO:0048500;signal recognition particle;0.00378100766999222!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00393986450967826!GO:0017166;vinculin binding;0.00414457596775581!GO:0005741;mitochondrial outer membrane;0.00414707398587377!GO:0003682;chromatin binding;0.00416077622661866!GO:0000910;cytokinesis;0.00427035467046161!GO:0030660;Golgi-associated vesicle membrane;0.00432782630192842!GO:0006261;DNA-dependent DNA replication;0.00442755129660605!GO:0045045;secretory pathway;0.0044606836966777!GO:0030127;COPII vesicle coat;0.00467237092513231!GO:0012507;ER to Golgi transport vesicle membrane;0.00467237092513231!GO:0006334;nucleosome assembly;0.00473822194675976!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00477506023873353!GO:0030027;lamellipodium;0.00481526185338635!GO:0030145;manganese ion binding;0.00484850445422168!GO:0008186;RNA-dependent ATPase activity;0.00484850445422168!GO:0008139;nuclear localization sequence binding;0.00494594439058188!GO:0004177;aminopeptidase activity;0.00524163278718825!GO:0007040;lysosome organization and biogenesis;0.0055017550035442!GO:0015992;proton transport;0.00568831346177823!GO:0009967;positive regulation of signal transduction;0.00568831346177823!GO:0006818;hydrogen transport;0.00581444012445498!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00581491085545844!GO:0007030;Golgi organization and biogenesis;0.0060021987280721!GO:0019798;procollagen-proline dioxygenase activity;0.00613568650484947!GO:0031902;late endosome membrane;0.00617790195955629!GO:0008287;protein serine/threonine phosphatase complex;0.00667274841917948!GO:0031901;early endosome membrane;0.00670570627431553!GO:0043488;regulation of mRNA stability;0.00670570627431553!GO:0043487;regulation of RNA stability;0.00670570627431553!GO:0006497;protein amino acid lipidation;0.00705994879084391!GO:0005583;fibrillar collagen;0.00734007948327974!GO:0007052;mitotic spindle organization and biogenesis;0.00746910346374698!GO:0051540;metal cluster binding;0.00755255374681629!GO:0051536;iron-sulfur cluster binding;0.00755255374681629!GO:0045892;negative regulation of transcription, DNA-dependent;0.00790201546401733!GO:0065007;biological regulation;0.00797559834486338!GO:0006402;mRNA catabolic process;0.00798032216940225!GO:0006626;protein targeting to mitochondrion;0.00810154489534258!GO:0051052;regulation of DNA metabolic process;0.00818323364789122!GO:0031418;L-ascorbic acid binding;0.00821477920556144!GO:0003684;damaged DNA binding;0.00830116922778546!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00830116922778546!GO:0045047;protein targeting to ER;0.00830116922778546!GO:0032940;secretion by cell;0.00842869677067761!GO:0009165;nucleotide biosynthetic process;0.00856591153978807!GO:0046483;heterocycle metabolic process;0.00875738144925178!GO:0000082;G1/S transition of mitotic cell cycle;0.0090104355046884!GO:0006650;glycerophospholipid metabolic process;0.00907723906570164!GO:0031497;chromatin assembly;0.00920073391263564!GO:0006352;transcription initiation;0.00931402263662285!GO:0006354;RNA elongation;0.00931402263662285!GO:0005869;dynactin complex;0.00942146451838204!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00974740778519973!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00974740778519973!GO:0005096;GTPase activator activity;0.00992063305367504!GO:0003746;translation elongation factor activity;0.0100613275107168!GO:0000049;tRNA binding;0.0101424679855114!GO:0022890;inorganic cation transmembrane transporter activity;0.010380917704628!GO:0006607;NLS-bearing substrate import into nucleus;0.0108061690207717!GO:0006302;double-strand break repair;0.0108694983221357!GO:0030659;cytoplasmic vesicle membrane;0.0108800390907407!GO:0030118;clathrin coat;0.0111022026478679!GO:0005774;vacuolar membrane;0.0111129927913768!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0111207425124903!GO:0005876;spindle microtubule;0.0111332800013745!GO:0007033;vacuole organization and biogenesis;0.0113488140931309!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0113892429506642!GO:0030521;androgen receptor signaling pathway;0.0114638557021684!GO:0004004;ATP-dependent RNA helicase activity;0.0115925899018072!GO:0006414;translational elongation;0.0117584519885002!GO:0006595;polyamine metabolic process;0.0118141801109942!GO:0016272;prefoldin complex;0.0118351621087054!GO:0007017;microtubule-based process;0.0122667378640224!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0125419644200987!GO:0006506;GPI anchor biosynthetic process;0.0125993636429882!GO:0051087;chaperone binding;0.0130176506578932!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0131468580903537!GO:0048468;cell development;0.0133024681742954!GO:0005684;U2-dependent spliceosome;0.0135411555438993!GO:0006611;protein export from nucleus;0.013573510346811!GO:0046467;membrane lipid biosynthetic process;0.013573510346811!GO:0031529;ruffle organization and biogenesis;0.0135844421939681!GO:0007034;vacuolar transport;0.0138115059052619!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0141034025213627!GO:0044433;cytoplasmic vesicle part;0.0147627537965458!GO:0006505;GPI anchor metabolic process;0.0151148533429755!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0153034405050693!GO:0005862;muscle thin filament tropomyosin;0.0153349588858905!GO:0008312;7S RNA binding;0.0156212964115308!GO:0030384;phosphoinositide metabolic process;0.0162100851071596!GO:0035258;steroid hormone receptor binding;0.0162617633509929!GO:0050790;regulation of catalytic activity;0.0162617633509929!GO:0043022;ribosome binding;0.0164980471487281!GO:0030880;RNA polymerase complex;0.0164980471487281!GO:0030125;clathrin vesicle coat;0.0166244432949184!GO:0030665;clathrin coated vesicle membrane;0.0166244432949184!GO:0008180;signalosome;0.0166878400563986!GO:0030032;lamellipodium biogenesis;0.0167243574757298!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0171225611832822!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0171225611832822!GO:0000159;protein phosphatase type 2A complex;0.01712441096766!GO:0008601;protein phosphatase type 2A regulator activity;0.017237660420252!GO:0006740;NADPH regeneration;0.0179336086406368!GO:0006098;pentose-phosphate shunt;0.0179336086406368!GO:0000792;heterochromatin;0.0181841549492606!GO:0051101;regulation of DNA binding;0.0183690849655626!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0186109828873926!GO:0006897;endocytosis;0.019022431346195!GO:0010324;membrane invagination;0.019022431346195!GO:0046519;sphingoid metabolic process;0.0191750664926138!GO:0016301;kinase activity;0.0194655603173152!GO:0042158;lipoprotein biosynthetic process;0.0201606344506191!GO:0000922;spindle pole;0.02038676354613!GO:0032906;transforming growth factor-beta2 production;0.0211278105259725!GO:0032909;regulation of transforming growth factor-beta2 production;0.0211278105259725!GO:0001666;response to hypoxia;0.0213565584411519!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0213565584411519!GO:0015002;heme-copper terminal oxidase activity;0.0213565584411519!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0213565584411519!GO:0004129;cytochrome-c oxidase activity;0.0213565584411519!GO:0031625;ubiquitin protein ligase binding;0.0216104459511081!GO:0003711;transcription elongation regulator activity;0.0217240646797578!GO:0008632;apoptotic program;0.0220867219936949!GO:0003678;DNA helicase activity;0.0222450513958577!GO:0012506;vesicle membrane;0.022612510538661!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0226653615415336!GO:0005832;chaperonin-containing T-complex;0.0230317639187874!GO:0051128;regulation of cellular component organization and biogenesis;0.0230785132983062!GO:0005856;cytoskeleton;0.0231887880948431!GO:0016311;dephosphorylation;0.023699020200302!GO:0016791;phosphoric monoester hydrolase activity;0.023699020200302!GO:0044437;vacuolar part;0.0237628085951428!GO:0048518;positive regulation of biological process;0.0238141353143804!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0239112161069415!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0241087149562372!GO:0003779;actin binding;0.024171410927287!GO:0006289;nucleotide-excision repair;0.0247827149037088!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0248915973336087!GO:0007041;lysosomal transport;0.0249547203204868!GO:0006401;RNA catabolic process;0.0250950671174936!GO:0005875;microtubule associated complex;0.0253228231310151!GO:0018193;peptidyl-amino acid modification;0.0253799287479584!GO:0045941;positive regulation of transcription;0.0254345258808956!GO:0007160;cell-matrix adhesion;0.0258644267901627!GO:0031589;cell-substrate adhesion;0.0260622324470085!GO:0045893;positive regulation of transcription, DNA-dependent;0.0262741210641307!GO:0005586;collagen type III;0.026734401847524!GO:0005801;cis-Golgi network;0.0268921731724591!GO:0030140;trans-Golgi network transport vesicle;0.0278297731779843!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0284393536013959!GO:0007021;tubulin folding;0.0291429233356825!GO:0031575;G1/S transition checkpoint;0.0296284005429843!GO:0006672;ceramide metabolic process;0.0298870560609234!GO:0000118;histone deacetylase complex;0.0300568450282446!GO:0003923;GPI-anchor transamidase activity;0.0300568450282446!GO:0016255;attachment of GPI anchor to protein;0.0300568450282446!GO:0042765;GPI-anchor transamidase complex;0.0300568450282446!GO:0022415;viral reproductive process;0.0300793981197718!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0306323082666376!GO:0000428;DNA-directed RNA polymerase complex;0.0306323082666376!GO:0050811;GABA receptor binding;0.0314237318421829!GO:0000209;protein polyubiquitination;0.0315922131078581!GO:0007265;Ras protein signal transduction;0.0317286278622378!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0325666388733391!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0325666388733391!GO:0016251;general RNA polymerase II transcription factor activity;0.0328240414160813!GO:0030518;steroid hormone receptor signaling pathway;0.0328621500471222!GO:0035035;histone acetyltransferase binding;0.032994185753116!GO:0045792;negative regulation of cell size;0.0331092724986701!GO:0031323;regulation of cellular metabolic process;0.0331936225138883!GO:0030041;actin filament polymerization;0.0332031227623422!GO:0046822;regulation of nucleocytoplasmic transport;0.0337671342946792!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0339027151662814!GO:0005784;translocon complex;0.0359651433328654!GO:0005765;lysosomal membrane;0.0359651433328654!GO:0003756;protein disulfide isomerase activity;0.0365746133429023!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0365746133429023!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0369665209744804!GO:0030308;negative regulation of cell growth;0.0374020226145478!GO:0009225;nucleotide-sugar metabolic process;0.0375270497389705!GO:0031970;organelle envelope lumen;0.0375639151290057!GO:0045334;clathrin-coated endocytic vesicle;0.0375786169066398!GO:0007059;chromosome segregation;0.0378456078557065!GO:0006007;glucose catabolic process;0.0382806958064737!GO:0046983;protein dimerization activity;0.0388596549291342!GO:0005099;Ras GTPase activator activity;0.0392851888422376!GO:0003702;RNA polymerase II transcription factor activity;0.0395184888685563!GO:0006376;mRNA splice site selection;0.0395184888685563!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0395184888685563!GO:0030911;TPR domain binding;0.0395191059898139!GO:0004722;protein serine/threonine phosphatase activity;0.0398193282588538!GO:0032507;maintenance of cellular protein localization;0.040270126967724!GO:0000339;RNA cap binding;0.0405120052066626!GO:0008017;microtubule binding;0.0408446412337647!GO:0006405;RNA export from nucleus;0.0408509322309737!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0416395226344665!GO:0006778;porphyrin metabolic process;0.0424638208801129!GO:0033013;tetrapyrrole metabolic process;0.0424638208801129!GO:0051287;NAD binding;0.0427108601043783!GO:0005669;transcription factor TFIID complex;0.0430597944886229!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0431807310952909!GO:0044452;nucleolar part;0.0440827576489218!GO:0042770;DNA damage response, signal transduction;0.0442797407216081!GO:0005657;replication fork;0.0450130036908836!GO:0050681;androgen receptor binding;0.0450130036908836!GO:0006284;base-excision repair;0.0450246897294398!GO:0005588;collagen type V;0.0454266975480967!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455141397289329!GO:0006979;response to oxidative stress;0.0456684029178079!GO:0043624;cellular protein complex disassembly;0.0462266062060742!GO:0051235;maintenance of localization;0.0462982364654555!GO:0030833;regulation of actin filament polymerization;0.0470406610883252!GO:0030433;ER-associated protein catabolic process;0.0471973937463034!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0471973937463034!GO:0030508;thiol-disulfide exchange intermediate activity;0.0473170357277808!GO:0008286;insulin receptor signaling pathway;0.0474405662378629!GO:0046426;negative regulation of JAK-STAT cascade;0.0481883978956094!GO:0005811;lipid particle;0.0494039871201414!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0496195892898422!GO:0010257;NADH dehydrogenase complex assembly;0.0496195892898422!GO:0033108;mitochondrial respiratory chain complex assembly;0.0496195892898422 | |||
|sample_id=10704 | |sample_id=10704 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=bone | |sample_tissue=bone | ||
|top_motifs=TAL1_TCF{3,4,12}:2.14352434187;NKX3-1:2.10128903917;PPARG:2.06061635208;EVI1:2.017481083;EN1,2:1.59306728583;ESR1:1.54344577134;HOX{A5,B5}:1.2425766273;AIRE:1.19809570799;GLI1..3:1.18410705753;NR6A1:1.15383727785;GTF2A1,2:1.150598869;HOX{A4,D4}:1.1067471792;FOXD3:1.01801942603;MYBL2:1.01332922197;HMGA1,2:0.973010108713;HBP1_HMGB_SSRP1_UBTF:0.960938406709;POU5F1:0.944796409927;ZNF384:0.936319129788;MYB:0.886591497601;MTE{core}:0.877139302939;VSX1,2:0.835202644439;UFEwm:0.826965645591;TEAD1:0.822062429521;ADNP_IRX_SIX_ZHX:0.82099582318;ZBTB16:0.790517350022;RXR{A,B,G}:0.786988403745;TFCP2:0.786411655313;PAX3,7:0.775996480525;FOXA2:0.759818795198;NFATC1..3:0.734526110315;TFAP2B:0.733751838921;TP53:0.731201028777;PAX8:0.730449379318;PDX1:0.728442889236;NR3C1:0.725809344931;ATF6:0.725028866639;NFE2L1:0.699807631611;TFDP1:0.690843528423;NKX3-2:0.681847360904;XBP1:0.643974386863;NKX2-2,8:0.640910038249;DBP:0.630454509009;PAX4:0.62898072976;ZNF148:0.615395113965;HIC1:0.600828751791;POU3F1..4:0.569589809315;MAFB:0.563476656861;HES1:0.559067766594;SPZ1:0.536928832446;ZIC1..3:0.507711716918;TEF:0.504440461109;FOXL1:0.481041019102;NR1H4:0.47135520368;HIF1A:0.471349089491;MAZ:0.455397671158;LEF1_TCF7_TCF7L1,2:0.43296440216;EBF1:0.424819104933;POU6F1:0.423202921646;GTF2I:0.419937331356;MEF2{A,B,C,D}:0.412483206664;HLF:0.401252919284;SRF:0.384526976658;NKX2-1,4:0.374322103979;TLX1..3_NFIC{dimer}:0.370858798724;SMAD1..7,9:0.369951128105;ZBTB6:0.357507199056;FOX{D1,D2}:0.348618456051;POU1F1:0.348514040631;RFX1:0.346687994027;EGR1..3:0.311967368141;IKZF1:0.307828291709;MED-1{core}:0.306522314806;T:0.304570574963;HSF1,2:0.275502508329;NFE2L2:0.245837506625;GCM1,2:0.245199189179;TOPORS:0.2403473616;TBX4,5:0.239356357837;XCPE1{core}:0.224228184404;NFIX:0.213309652513;GFI1B:0.204076521529;OCT4_SOX2{dimer}:0.201572414977;NHLH1,2:0.191888952672;ZFP161:0.187854067117;KLF4:0.17252676361;GATA4:0.171742384041;STAT2,4,6:0.168358336145;TFAP4:0.163141252086;MZF1:0.162482868102;SOX17:0.154354892613;FOX{I1,J2}:0.149266171137;ZNF423:0.148714942131;BACH2:0.13932184435;ZNF143:0.138752122175;ZNF238:0.114463456797;MYFfamily:0.108488545002;CDX1,2,4:0.0844013095136;TFAP2{A,C}:0.0655131529111;FOXO1,3,4:0.0591371780557;DMAP1_NCOR{1,2}_SMARC:0.0578499558823;FOXP3:0.0414093016938;PRDM1:0.0290485480331;NANOG{mouse}:0.00802619063816;FOSL2:-0.00982271329937;FOXN1:-0.0111323795004;FOS_FOS{B,L1}_JUN{B,D}:-0.0164136842653;HMX1:-0.0201763177824;NFIL3:-0.0252108329095;HNF1A:-0.0361435816755;NFE2:-0.0483097998083;JUN:-0.049840007271;ELK1,4_GABP{A,B1}:-0.0633741740371;ONECUT1,2:-0.0679127599575;PAX5:-0.071664951352;FOXP1:-0.0844174021711;CDC5L:-0.0858351629704;GZF1:-0.105416946428;STAT5{A,B}:-0.106924584473;MTF1:-0.10810921382;CREB1:-0.114756720366;RUNX1..3:-0.119974404039;RXRA_VDR{dimer}:-0.121856926066;NRF1:-0.162201416321;IRF1,2:-0.188542012156;NR5A1,2:-0.1885767896;BPTF:-0.196491854671;REST:-0.198989114939;E2F1..5:-0.206397532132;TBP:-0.221847552564;TLX2:-0.228540164233;HAND1,2:-0.232931013434;SOX5:-0.23840417322;ALX4:-0.251637777924;FOX{F1,F2,J1}:-0.256747683825;bHLH_family:-0.262641616292;PAX2:-0.276526251506;NKX2-3_NKX2-5:-0.277066115383;PATZ1:-0.278586404231;ATF4:-0.283912811269;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.284739646884;CEBPA,B_DDIT3:-0.297186127856;SOX2:-0.297327128688;AR:-0.303547333416;CUX2:-0.306773825389;FOXM1:-0.307539931417;YY1:-0.309837651231;SREBF1,2:-0.318971303529;IRF7:-0.330448750423;GFI1:-0.355800375579;ETS1,2:-0.386502434156;SP1:-0.387920323425;RFX2..5_RFXANK_RFXAP:-0.388386547602;NANOG:-0.395174523434;NFKB1_REL_RELA:-0.406340774816;LHX3,4:-0.410179495344;ATF2:-0.414252455697;AHR_ARNT_ARNT2:-0.425925958379;PRRX1,2:-0.445745554742;PITX1..3:-0.451356020718;ELF1,2,4:-0.482063495786;PAX6:-0.482979671931;RORA:-0.487016218842;HOXA9_MEIS1:-0.492881807861;CRX:-0.504779147488;NFY{A,B,C}:-0.505283603219;SPI1:-0.538844984218;ARID5B:-0.580450805682;GATA6:-0.599481749037;RREB1:-0.638429858523;ATF5_CREB3:-0.639788818255;SPIB:-0.647090715897;EP300:-0.718560467067;BREu{core}:-0.720222527893;ESRRA:-0.743905425746;SOX{8,9,10}:-0.811836431708;HNF4A_NR2F1,2:-0.898540144934;POU2F1..3:-0.925467912283;FOXQ1:-0.933579537201;HOX{A6,A7,B6,B7}:-0.944664783276;SNAI1..3:-0.96125911223;IKZF2:-1.04902136392;STAT1,3:-1.0805354553;ALX1:-1.09027638195;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.13143071593;RBPJ:-1.16542258146;TGIF1:-1.18074391817;ZEB1:-1.19262970462;LMO2:-1.27663176225;PAX1,9:-1.27775893943;NKX6-1,2:-1.57009323622;PBX1:-1.5842759712;MYOD1:-1.69963601367 | |top_motifs=TAL1_TCF{3,4,12}:2.14352434187;NKX3-1:2.10128903917;PPARG:2.06061635208;EVI1:2.017481083;EN1,2:1.59306728583;ESR1:1.54344577134;HOX{A5,B5}:1.2425766273;AIRE:1.19809570799;GLI1..3:1.18410705753;NR6A1:1.15383727785;GTF2A1,2:1.150598869;HOX{A4,D4}:1.1067471792;FOXD3:1.01801942603;MYBL2:1.01332922197;HMGA1,2:0.973010108713;HBP1_HMGB_SSRP1_UBTF:0.960938406709;POU5F1:0.944796409927;ZNF384:0.936319129788;MYB:0.886591497601;MTE{core}:0.877139302939;VSX1,2:0.835202644439;UFEwm:0.826965645591;TEAD1:0.822062429521;ADNP_IRX_SIX_ZHX:0.82099582318;ZBTB16:0.790517350022;RXR{A,B,G}:0.786988403745;TFCP2:0.786411655313;PAX3,7:0.775996480525;FOXA2:0.759818795198;NFATC1..3:0.734526110315;TFAP2B:0.733751838921;TP53:0.731201028777;PAX8:0.730449379318;PDX1:0.728442889236;NR3C1:0.725809344931;ATF6:0.725028866639;NFE2L1:0.699807631611;TFDP1:0.690843528423;NKX3-2:0.681847360904;XBP1:0.643974386863;NKX2-2,8:0.640910038249;DBP:0.630454509009;PAX4:0.62898072976;ZNF148:0.615395113965;HIC1:0.600828751791;POU3F1..4:0.569589809315;MAFB:0.563476656861;HES1:0.559067766594;SPZ1:0.536928832446;ZIC1..3:0.507711716918;TEF:0.504440461109;FOXL1:0.481041019102;NR1H4:0.47135520368;HIF1A:0.471349089491;MAZ:0.455397671158;LEF1_TCF7_TCF7L1,2:0.43296440216;EBF1:0.424819104933;POU6F1:0.423202921646;GTF2I:0.419937331356;MEF2{A,B,C,D}:0.412483206664;HLF:0.401252919284;SRF:0.384526976658;NKX2-1,4:0.374322103979;TLX1..3_NFIC{dimer}:0.370858798724;SMAD1..7,9:0.369951128105;ZBTB6:0.357507199056;FOX{D1,D2}:0.348618456051;POU1F1:0.348514040631;RFX1:0.346687994027;EGR1..3:0.311967368141;IKZF1:0.307828291709;MED-1{core}:0.306522314806;T:0.304570574963;HSF1,2:0.275502508329;NFE2L2:0.245837506625;GCM1,2:0.245199189179;TOPORS:0.2403473616;TBX4,5:0.239356357837;XCPE1{core}:0.224228184404;NFIX:0.213309652513;GFI1B:0.204076521529;OCT4_SOX2{dimer}:0.201572414977;NHLH1,2:0.191888952672;ZFP161:0.187854067117;KLF4:0.17252676361;GATA4:0.171742384041;STAT2,4,6:0.168358336145;TFAP4:0.163141252086;MZF1:0.162482868102;SOX17:0.154354892613;FOX{I1,J2}:0.149266171137;ZNF423:0.148714942131;BACH2:0.13932184435;ZNF143:0.138752122175;ZNF238:0.114463456797;MYFfamily:0.108488545002;CDX1,2,4:0.0844013095136;TFAP2{A,C}:0.0655131529111;FOXO1,3,4:0.0591371780557;DMAP1_NCOR{1,2}_SMARC:0.0578499558823;FOXP3:0.0414093016938;PRDM1:0.0290485480331;NANOG{mouse}:0.00802619063816;FOSL2:-0.00982271329937;FOXN1:-0.0111323795004;FOS_FOS{B,L1}_JUN{B,D}:-0.0164136842653;HMX1:-0.0201763177824;NFIL3:-0.0252108329095;HNF1A:-0.0361435816755;NFE2:-0.0483097998083;JUN:-0.049840007271;ELK1,4_GABP{A,B1}:-0.0633741740371;ONECUT1,2:-0.0679127599575;PAX5:-0.071664951352;FOXP1:-0.0844174021711;CDC5L:-0.0858351629704;GZF1:-0.105416946428;STAT5{A,B}:-0.106924584473;MTF1:-0.10810921382;CREB1:-0.114756720366;RUNX1..3:-0.119974404039;RXRA_VDR{dimer}:-0.121856926066;NRF1:-0.162201416321;IRF1,2:-0.188542012156;NR5A1,2:-0.1885767896;BPTF:-0.196491854671;REST:-0.198989114939;E2F1..5:-0.206397532132;TBP:-0.221847552564;TLX2:-0.228540164233;HAND1,2:-0.232931013434;SOX5:-0.23840417322;ALX4:-0.251637777924;FOX{F1,F2,J1}:-0.256747683825;bHLH_family:-0.262641616292;PAX2:-0.276526251506;NKX2-3_NKX2-5:-0.277066115383;PATZ1:-0.278586404231;ATF4:-0.283912811269;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.284739646884;CEBPA,B_DDIT3:-0.297186127856;SOX2:-0.297327128688;AR:-0.303547333416;CUX2:-0.306773825389;FOXM1:-0.307539931417;YY1:-0.309837651231;SREBF1,2:-0.318971303529;IRF7:-0.330448750423;GFI1:-0.355800375579;ETS1,2:-0.386502434156;SP1:-0.387920323425;RFX2..5_RFXANK_RFXAP:-0.388386547602;NANOG:-0.395174523434;NFKB1_REL_RELA:-0.406340774816;LHX3,4:-0.410179495344;ATF2:-0.414252455697;AHR_ARNT_ARNT2:-0.425925958379;PRRX1,2:-0.445745554742;PITX1..3:-0.451356020718;ELF1,2,4:-0.482063495786;PAX6:-0.482979671931;RORA:-0.487016218842;HOXA9_MEIS1:-0.492881807861;CRX:-0.504779147488;NFY{A,B,C}:-0.505283603219;SPI1:-0.538844984218;ARID5B:-0.580450805682;GATA6:-0.599481749037;RREB1:-0.638429858523;ATF5_CREB3:-0.639788818255;SPIB:-0.647090715897;EP300:-0.718560467067;BREu{core}:-0.720222527893;ESRRA:-0.743905425746;SOX{8,9,10}:-0.811836431708;HNF4A_NR2F1,2:-0.898540144934;POU2F1..3:-0.925467912283;FOXQ1:-0.933579537201;HOX{A6,A7,B6,B7}:-0.944664783276;SNAI1..3:-0.96125911223;IKZF2:-1.04902136392;STAT1,3:-1.0805354553;ALX1:-1.09027638195;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.13143071593;RBPJ:-1.16542258146;TGIF1:-1.18074391817;ZEB1:-1.19262970462;LMO2:-1.27663176225;PAX1,9:-1.27775893943;NKX6-1,2:-1.57009323622;PBX1:-1.5842759712;MYOD1:-1.69963601367 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10704-109H2;search_select_hide=table117:FF:10704-109H2 | |||
}} | }} | ||
Latest revision as of 14:34, 3 June 2020
| Name: | osteoclastoma cell line:Hs 706.T |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11835 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11835
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11835
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.504 |
| 10 | 10 | 0.993 |
| 100 | 100 | 0.781 |
| 101 | 101 | 0.712 |
| 102 | 102 | 0.246 |
| 103 | 103 | 0.223 |
| 104 | 104 | 0.285 |
| 105 | 105 | 0.346 |
| 106 | 106 | 0.65 |
| 107 | 107 | 0.497 |
| 108 | 108 | 0.505 |
| 109 | 109 | 0.581 |
| 11 | 11 | 0.73 |
| 110 | 110 | 0.632 |
| 111 | 111 | 0.468 |
| 112 | 112 | 0.678 |
| 113 | 113 | 0.0709 |
| 114 | 114 | 0.693 |
| 115 | 115 | 0.667 |
| 116 | 116 | 0.391 |
| 117 | 117 | 0.885 |
| 118 | 118 | 0.374 |
| 119 | 119 | 0.475 |
| 12 | 12 | 0.369 |
| 120 | 120 | 0.842 |
| 121 | 121 | 0.696 |
| 122 | 122 | 0.409 |
| 123 | 123 | 0.0851 |
| 124 | 124 | 0.635 |
| 125 | 125 | 0.618 |
| 126 | 126 | 0.724 |
| 127 | 127 | 0.49 |
| 128 | 128 | 0.565 |
| 129 | 129 | 0.354 |
| 13 | 13 | 0.025 |
| 130 | 130 | 0.56 |
| 131 | 131 | 0.922 |
| 132 | 132 | 0.761 |
| 133 | 133 | 0.799 |
| 134 | 134 | 0.0615 |
| 135 | 135 | 0.445 |
| 136 | 136 | 0.473 |
| 137 | 137 | 0.405 |
| 138 | 138 | 0.637 |
| 139 | 139 | 0.615 |
| 14 | 14 | 0.241 |
| 140 | 140 | 0.419 |
| 141 | 141 | 0.485 |
| 142 | 142 | 0.896 |
| 143 | 143 | 0.209 |
| 144 | 144 | 0.449 |
| 145 | 145 | 0.674 |
| 146 | 146 | 0.529 |
| 147 | 147 | 0.0911 |
| 148 | 148 | 0.355 |
| 149 | 149 | 0.985 |
| 15 | 15 | 0.397 |
| 150 | 150 | 0.748 |
| 151 | 151 | 0.818 |
| 152 | 152 | 0.0668 |
| 153 | 153 | 0.987 |
| 154 | 154 | 0.325 |
| 155 | 155 | 0.104 |
| 156 | 156 | 0.474 |
| 157 | 157 | 0.37 |
| 158 | 158 | 0.138 |
| 159 | 159 | 0.182 |
| 16 | 16 | 0.0411 |
| 160 | 160 | 0.26 |
| 161 | 161 | 0.95 |
| 162 | 162 | 0.306 |
| 163 | 163 | 0.434 |
| 164 | 164 | 0.731 |
| 165 | 165 | 0.802 |
| 166 | 166 | 0.179 |
| 167 | 167 | 0.822 |
| 168 | 168 | 0.188 |
| 169 | 169 | 0.763 |
| 17 | 17 | 0.544 |
| 18 | 18 | 0.0166 |
| 19 | 19 | 0.125 |
| 2 | 2 | 0.531 |
| 20 | 20 | 0.866 |
| 21 | 21 | 0.247 |
| 22 | 22 | 0.407 |
| 23 | 23 | 0.0808 |
| 24 | 24 | 0.342 |
| 25 | 25 | 0.366 |
| 26 | 26 | 0.64 |
| 27 | 27 | 0.586 |
| 28 | 28 | 0.911 |
| 29 | 29 | 0.909 |
| 3 | 3 | 0.783 |
| 30 | 30 | 0.757 |
| 31 | 31 | 0.65 |
| 32 | 32 | 5.25649e-19 |
| 33 | 33 | 0.855 |
| 34 | 34 | 0.988 |
| 35 | 35 | 0.94 |
| 36 | 36 | 0.347 |
| 37 | 37 | 0.406 |
| 38 | 38 | 0.264 |
| 39 | 39 | 0.595 |
| 4 | 4 | 0.66 |
| 40 | 40 | 0.262 |
| 41 | 41 | 0.47 |
| 42 | 42 | 0.518 |
| 43 | 43 | 0.5 |
| 44 | 44 | 0.827 |
| 45 | 45 | 0.751 |
| 46 | 46 | 0.339 |
| 47 | 47 | 0.419 |
| 48 | 48 | 0.968 |
| 49 | 49 | 0.884 |
| 5 | 5 | 0.123 |
| 50 | 50 | 0.615 |
| 51 | 51 | 0.397 |
| 52 | 52 | 0.948 |
| 53 | 53 | 0.104 |
| 54 | 54 | 0.56 |
| 55 | 55 | 0.175 |
| 56 | 56 | 0.924 |
| 57 | 57 | 0.481 |
| 58 | 58 | 0.145 |
| 59 | 59 | 0.0277 |
| 6 | 6 | 0.565 |
| 60 | 60 | 0.994 |
| 61 | 61 | 0.203 |
| 62 | 62 | 0.987 |
| 63 | 63 | 0.552 |
| 64 | 64 | 0.889 |
| 65 | 65 | 0.769 |
| 66 | 66 | 0.565 |
| 67 | 67 | 0.0275 |
| 68 | 68 | 0.383 |
| 69 | 69 | 0.492 |
| 7 | 7 | 0.282 |
| 70 | 70 | 0.156 |
| 71 | 71 | 0.606 |
| 72 | 72 | 0.197 |
| 73 | 73 | 0.0468 |
| 74 | 74 | 0.0144 |
| 75 | 75 | 0.798 |
| 76 | 76 | 0.194 |
| 77 | 77 | 0.111 |
| 78 | 78 | 0.239 |
| 79 | 79 | 0.0514 |
| 8 | 8 | 0.207 |
| 80 | 80 | 0.764 |
| 81 | 81 | 0.693 |
| 82 | 82 | 0.684 |
| 83 | 83 | 0.409 |
| 84 | 84 | 0.447 |
| 85 | 85 | 0.375 |
| 86 | 86 | 0.726 |
| 87 | 87 | 0.396 |
| 88 | 88 | 0.822 |
| 89 | 89 | 0.681 |
| 9 | 9 | 0.88 |
| 90 | 90 | 0.24 |
| 91 | 91 | 0.494 |
| 92 | 92 | 0.746 |
| 93 | 93 | 0.445 |
| 94 | 94 | 0.409 |
| 95 | 95 | 0.599 |
| 96 | 96 | 0.839 |
| 97 | 97 | 0.247 |
| 98 | 98 | 0.321 |
| 99 | 99 | 0.521 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11835
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100969 osteoclastoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000054 (bone matrix secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)
0000137 (osteocyte)
0000092 (osteoclast)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
7 (disease of anatomical entity)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
200 (giant cell tumor)
4305 (bone giant cell tumor)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100372 (bone cancer cell)
0100969 (osteoclastoma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
