FF:10847-111F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005518 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007946;DRR008818;DRZ000243;DRZ001628;DRZ011593;DRZ012978 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460,FF:0102424,FF:0103764 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100400,FF:0100453,FF:0102424 | |fonse_cell_line=FF:0100400,FF:0100453,FF:0102424 | ||
|fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0102424 | |fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10847-111F1 | |id=FF:10847-111F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424;;FF:0103764 | ||
|is_obsolete= | |||
|library_id=CNhs13063 | |||
|library_id_phase_based=2:CNhs13063 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10847 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10847 | |||
|name=mesothelioma cell line:NCI-H2052 | |name=mesothelioma cell line:NCI-H2052 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13063,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13063,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0353308737194912,0,0,0,0,-0.0896562826474037,0,-0.206700384754532,0.22453410762522,0,0,0,0.0706617474389824,0,0,0,0,0.0706617474389824,0,0,0,0,-0.0219038042030683,0,0,0,0,0,-0.0272961488290751,0,0,0.141996521026092,0,0,0,0,0,0,0,0,0,0,0.0706617474389824,0,-0.159889171392734,0,0,0,0,0,0,0,0,0.091870772292304,0,0,0,0,0,0.019545057362408,0.0706617474389824,-0.0263306138036227,0,0,0.0873669455883695,0,0,0,0,0,0,0,0,0.0706617474389824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169229597179372,0.0353308737194912,0,0,0.153351592558453,0.165121360257133,0,0.131419206145359,0,0,-0.0980353512377064,0.142689290693115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124622467490683,0,0,0,-0.113179768006609,-0.254314792035912,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.131419206145359,-0.0980353512377064,0,0,0.0706617474389824,0,0,0.0706617474389824,0,0,0.131419206145359,0,0,-0.062468302484098,0.0429556226311691,-0.16019056447799,-0.0120959363781126,0.0353308737194912,0,0.118611211984216,0,0,0,0,0.131419206145359,0,0.131419206145359,0.184710572801466,0,0.646199693461209,0,-0.0504125515893149,0.0706617474389824,0,0,0,-0.0159181679798772,-0.305472230898407,0,0.0324087823217721,0.116366311724098,0,0,0,0,0.111242083162218,0,-0.120879483793741,-0.0120584208844349,-0.0369010153013403,0.43753933356759,0.00743470172578808,0,0,0,0.22473661906089,-0.0580175217506728,0,0,-0.0864489780323825,0.1627937803131,0,0,-0.0771489272776165,0,-0.114337948861532,0.199063931381211,0,0.19418843769274,0,0,0,0,0,0,0,0.131419206145359,0.274953110804954,0.0353308737194912,0,0.534130936239172,-0.0948170098686919,0.0245148231643653,0.131419206145359,0.468875932794074,0,-0.376024972468394,0,0.0706617474389824,0.265910750925695,0.170526693826972,0,0.044492718651345,0,0.139602395816376,-0.0209849666107065,-0.0565533929624305,0.090614590561445,0.0373087234303279,0.252010403276441,0,0.220602254956134,0.0592861986310957,0.0070909579362623,0.0136049646454626,0.0696278986679233,-0.180334340988728,-0.119177094941607,0,0,0.232171586810277,-0.224357974456556,0,0.313895654274018,0.166346007451088,-0.135347883440979,0.141507005542403,0.140814141524932,-0.00613261502837835,0.105831845136128,-0.0395325284566706,-0.107804634846072,0.0761743510655649,0.261030577755508,0.0706617474389824,0.0706617474389824,-0.00381522998703776,0.0381183383846743,0.130239308355094,0.00539214658196474,0,-0.0419853389846919,0.163827325732909,0.092355286400733,0.103726936332347,-0.0639535041150923,0.0706617474389824,0,-0.196127558300455,0,0,0,0,0,0.275612111208391,-0.0213786101389434,-0.000683974745267796,0,-0.0202655316932871,0.0353308737194912,0.069602502915451,0.0104383251832978,-0.401952550571837,0.16848216208096,0,-0.107923231794769,0,0.07580945610738,-0.15587605616724,-0.0634830704402605,0.198823514368906,0.410429105982248,-0.317138246833167,-0.476209064940049,0.153351592558453,-0.069563865786431,0.0751903263648953,0.698907302280907,0.0180642252701216,0.259417170508827,-0.0966366808514102,-0.00983352413673177,-0.0403308444664454,0.0706617474389824,-0.070445719601214,0,-0.160069936747065,0,0.257439210126706,0.000352061307632989,-0.125393720306668,0.0430187973934046,0,-0.223371358331412,0.204619461123618,0,0.0109544548595255,0,0.131419206145359,-0.01894787718928,0.169229597179372,-0.0839642677443649,0.0190754327942182,0,-0.440448340339134,0,0,0.110486178977893,-0.164814290325406,0,-0.238402737075555,-0.140326981419323,-0.135340108401221,-0.115971073434934,0.184710572801466,0,-0.151508197032313,0,0.184710572801466,0.205470207510517,0.0706617474389824,0.3807004903302,0.0963054765637666,0.0432074147921665,-0.0732919357347645,0,0,0.0071828068362908,0,0.276292662230311,0,0,0.141504496935222,0.115543473820144,0,0,0.0706617474389824,0,0,0,0,0,0,0,0,-0.141779637075063,-0.122661743406171,0.131419206145359,0.0706617474389824,0,0,0,0,0.184710572801466,0.00201309092901464,0,1.33235645999699,0.82825753070206,0,0.371174725283991,0,0,0,0,0.226268720272814,0.0289350247155532,0,-0.000443500352272419,0,0,0,0,-0.0861409897892114,0,0,0,0.0353308737194912,0.126980115747802,-0.0037395508512865,0,0,0,0.285378581386229,0,0,0,0,-0.167263096388258,0,0.0783179541301166,0.432578309251246,0,0.0252938260902518,-0.0815818795468414,0,-0.00896634327618651,0.0301329565953248,0.654976782532509,0,0.0706617474389824,-0.0291755449796106,0,0,-0.092730732667906,-0.0117084755266839,0,0.0144060977733742,0,0,0,0,0,0,0.135317305650767,0.400980310471054,0,0,0,0,0.0706617474389824,0,0,0,0,0.0706617474389824,-0.0103457712988186,0.139947530151767,0.184710572801466,0,0,0,0,0,0,0.0769344537132677,-0.0302249856444625,0,0,0,0,0,0.0706617474389824,0,0,0.149792380097402,0,0,0,0,0,-0.0263306138036227,0,0.0706617474389824,0,0.0706617474389824,0.378406467811458,0,0,-0.206700384754532,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.28474301966477,0,0,0,0,0,0,0,-0.090122725404624,0,0.0706617474389824,0,0,-0.0432226262699948,0,0,0,0.127375202021121,0,-0.0896562826474037,0,0,0,0,0,0,0.0353308737194912,0,0,0,0,0,0,0,0,0,0,0.336532216291844,0,0,0,0.314480320413569,0,-0.0799369566990176,0,0,0,0.086970100808089,0,0,0,0,0,0,0.10613613137395,0,0,0,0,0,0,0,0.0657096030726795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657096030726795,0.000472829914402825,0,0,0,0,1.23245512218986,0,0,-0.0272961488290751,0,0,0.116408270005346,0,0,0,0,0.00687424366774836,0,0.00644754188277651,-0.0533885580199371,0.0177610076136041,0,0,0,0.201941362650181,0,0,0.0403173535376361,0.0706617474389824,0.315872285152056,0,0,0,0,0,0,0,0,0.0706617474389824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0219038042030683,0,0,0,0,0,0,0,0,0,0,0,0,0.0353308737194912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0706617474389824,0,0,0,0.00131951044407467,0.0706617474389824,0,0,0,0,0,0,0.413333686942564,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=121.83675 | |rna_weight_ug=121.83675 | ||
|sample_age=65 | |sample_age=65 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL5915 | |sample_cell_catalog=CRL5915 | ||
|sample_cell_line=NCI-H2052 | |sample_cell_line=NCI-H2052 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89650187074738e-248!GO:0043226;organelle;6.4025832554027e-197!GO:0043229;intracellular organelle;1.62736780443082e-196!GO:0043231;intracellular membrane-bound organelle;4.83157365421972e-193!GO:0043227;membrane-bound organelle;8.12774835706897e-193!GO:0005737;cytoplasm;4.72664937458438e-188!GO:0044422;organelle part;8.23417549788517e-148!GO:0044446;intracellular organelle part;1.94574021774044e-146!GO:0044444;cytoplasmic part;4.76580938629648e-130!GO:0032991;macromolecular complex;1.13634465726565e-105!GO:0030529;ribonucleoprotein complex;5.48193865097681e-88!GO:0044237;cellular metabolic process;2.34150743148883e-85!GO:0044238;primary metabolic process;3.57939890983947e-85!GO:0005515;protein binding;2.33408676254284e-82!GO:0043170;macromolecule metabolic process;1.877777079228e-81!GO:0005634;nucleus;4.35588205456454e-80!GO:0044428;nuclear part;2.09863920828042e-74!GO:0043233;organelle lumen;1.23829363982756e-72!GO:0031974;membrane-enclosed lumen;1.23829363982756e-72!GO:0003723;RNA binding;5.10002627708547e-70!GO:0005739;mitochondrion;2.13288307342921e-67!GO:0016043;cellular component organization and biogenesis;2.01267949457374e-59!GO:0043234;protein complex;1.20234089232978e-53!GO:0005840;ribosome;2.91298254894827e-52!GO:0006412;translation;3.52587360862188e-50!GO:0019538;protein metabolic process;8.15283702338182e-50!GO:0006396;RNA processing;9.26890517205544e-50!GO:0031090;organelle membrane;7.94520397165332e-48!GO:0043283;biopolymer metabolic process;2.4887442479162e-46!GO:0044429;mitochondrial part;1.6601285244891e-45!GO:0003735;structural constituent of ribosome;4.63863750617877e-45!GO:0031981;nuclear lumen;7.28672525679112e-44!GO:0044260;cellular macromolecule metabolic process;1.33790267404484e-43!GO:0044267;cellular protein metabolic process;2.46567663570367e-43!GO:0033036;macromolecule localization;1.35522973175399e-41!GO:0043228;non-membrane-bound organelle;6.89964504184354e-41!GO:0043232;intracellular non-membrane-bound organelle;6.89964504184354e-41!GO:0031967;organelle envelope;7.1295992768586e-41!GO:0015031;protein transport;9.13887065683059e-41!GO:0031975;envelope;1.09359765596083e-40!GO:0009058;biosynthetic process;1.8576921301689e-40!GO:0005829;cytosol;2.96807572256875e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.35196142145123e-40!GO:0044249;cellular biosynthetic process;6.74250654773956e-40!GO:0006996;organelle organization and biogenesis;1.22826835766023e-38!GO:0016071;mRNA metabolic process;1.42453324222397e-38!GO:0033279;ribosomal subunit;2.12545080237173e-38!GO:0045184;establishment of protein localization;5.19049982634474e-38!GO:0008104;protein localization;6.60383257011569e-38!GO:0010467;gene expression;9.10361538579976e-38!GO:0046907;intracellular transport;7.2117450997967e-37!GO:0009059;macromolecule biosynthetic process;1.7799132100014e-36!GO:0065003;macromolecular complex assembly;1.83672192680224e-35!GO:0008380;RNA splicing;4.09562837893775e-34!GO:0006259;DNA metabolic process;2.26339761756852e-33!GO:0006397;mRNA processing;2.6850211860814e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.53900957074156e-33!GO:0022607;cellular component assembly;1.00605350273812e-31!GO:0007049;cell cycle;6.55468367673513e-31!GO:0005740;mitochondrial envelope;6.81856727394624e-29!GO:0006886;intracellular protein transport;1.46810142716389e-28!GO:0000166;nucleotide binding;1.96743374578672e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.28059419175279e-27!GO:0031966;mitochondrial membrane;6.29013610855562e-27!GO:0005654;nucleoplasm;2.57129867055326e-25!GO:0051649;establishment of cellular localization;3.39533697986922e-25!GO:0005681;spliceosome;3.91172101758044e-25!GO:0051641;cellular localization;4.56138460582309e-25!GO:0019866;organelle inner membrane;5.48168646938993e-25!GO:0022402;cell cycle process;1.04743731192703e-23!GO:0016462;pyrophosphatase activity;1.53588715250164e-23!GO:0005743;mitochondrial inner membrane;1.87673474613374e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.04597117673207e-23!GO:0000278;mitotic cell cycle;2.37702383638853e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.22483133034592e-23!GO:0017111;nucleoside-triphosphatase activity;1.09619648237007e-22!GO:0006974;response to DNA damage stimulus;1.69274040137852e-22!GO:0044445;cytosolic part;3.19031577218228e-22!GO:0003676;nucleic acid binding;1.25306294219361e-21!GO:0006119;oxidative phosphorylation;1.68681116644955e-21!GO:0015934;large ribosomal subunit;1.44961849976275e-20!GO:0005730;nucleolus;2.88834042987709e-20!GO:0032553;ribonucleotide binding;3.68367964405264e-20!GO:0032555;purine ribonucleotide binding;3.68367964405264e-20!GO:0044451;nucleoplasm part;4.65579980544984e-20!GO:0017076;purine nucleotide binding;6.08133618559117e-20!GO:0012505;endomembrane system;7.03853394714117e-20!GO:0031980;mitochondrial lumen;9.45232935844143e-20!GO:0005759;mitochondrial matrix;9.45232935844143e-20!GO:0016874;ligase activity;1.19833032988474e-19!GO:0015935;small ribosomal subunit;9.9268914757347e-19!GO:0006457;protein folding;1.17831497017157e-18!GO:0022618;protein-RNA complex assembly;1.83498626548945e-18!GO:0006281;DNA repair;2.52415648696898e-18!GO:0044455;mitochondrial membrane part;3.24121739119309e-18!GO:0000087;M phase of mitotic cell cycle;3.6079452820477e-18!GO:0006512;ubiquitin cycle;7.76804243116462e-18!GO:0007067;mitosis;7.95901243259336e-18!GO:0005694;chromosome;8.78575460705386e-18!GO:0048770;pigment granule;1.07690669439692e-17!GO:0042470;melanosome;1.07690669439692e-17!GO:0022403;cell cycle phase;1.41718164143068e-17!GO:0051301;cell division;1.5001099228401e-17!GO:0005524;ATP binding;4.71115319182423e-17!GO:0032559;adenyl ribonucleotide binding;6.48046585453793e-17!GO:0000502;proteasome complex (sensu Eukaryota);7.18844631593472e-17!GO:0044427;chromosomal part;1.17152785386479e-16!GO:0030554;adenyl nucleotide binding;1.60678039705995e-16!GO:0051186;cofactor metabolic process;2.0993772981313e-16!GO:0008135;translation factor activity, nucleic acid binding;3.23233601694591e-16!GO:0043285;biopolymer catabolic process;6.44717479095952e-16!GO:0005783;endoplasmic reticulum;8.8990050052637e-16!GO:0005746;mitochondrial respiratory chain;1.26704525105229e-15!GO:0044265;cellular macromolecule catabolic process;1.78017067116878e-15!GO:0016070;RNA metabolic process;1.97217142806602e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.18494167911e-15!GO:0005794;Golgi apparatus;2.37345388375096e-15!GO:0009719;response to endogenous stimulus;3.37215629278383e-15!GO:0006260;DNA replication;4.09717905365459e-15!GO:0019941;modification-dependent protein catabolic process;4.3155207085261e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.3155207085261e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.66845691538793e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.38620544100062e-15!GO:0042254;ribosome biogenesis and assembly;7.35162074068871e-15!GO:0044257;cellular protein catabolic process;7.63582338128427e-15!GO:0000279;M phase;1.61781009277137e-14!GO:0005761;mitochondrial ribosome;1.95777737127657e-14!GO:0000313;organellar ribosome;1.95777737127657e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.38453060572448e-14!GO:0003954;NADH dehydrogenase activity;2.38453060572448e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.38453060572448e-14!GO:0012501;programmed cell death;2.71019409719899e-14!GO:0009057;macromolecule catabolic process;2.83370386229974e-14!GO:0051276;chromosome organization and biogenesis;3.03832984599581e-14!GO:0008134;transcription factor binding;3.03832984599581e-14!GO:0051082;unfolded protein binding;3.12272232881756e-14!GO:0044432;endoplasmic reticulum part;3.50425305752678e-14!GO:0006915;apoptosis;3.59057311952034e-14!GO:0030163;protein catabolic process;3.81958944476039e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;5.282502143646e-14!GO:0000375;RNA splicing, via transesterification reactions;5.282502143646e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.282502143646e-14!GO:0016192;vesicle-mediated transport;7.2157077210239e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.71186744726485e-14!GO:0043412;biopolymer modification;1.12926911028273e-13!GO:0048193;Golgi vesicle transport;1.29019124500374e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.6408948940374e-13!GO:0044248;cellular catabolic process;2.77548712994225e-13!GO:0006605;protein targeting;4.86638095330992e-13!GO:0005635;nuclear envelope;1.0877644428537e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.43270859109632e-12!GO:0042773;ATP synthesis coupled electron transport;1.43270859109632e-12!GO:0008219;cell death;1.45809042488588e-12!GO:0016265;death;1.45809042488588e-12!GO:0006732;coenzyme metabolic process;1.48105652434511e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.7758593410513e-12!GO:0045271;respiratory chain complex I;1.7758593410513e-12!GO:0005747;mitochondrial respiratory chain complex I;1.7758593410513e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.11810783132547e-12!GO:0009055;electron carrier activity;2.86927766314568e-12!GO:0008639;small protein conjugating enzyme activity;3.79249342962702e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.36467794402675e-12!GO:0044453;nuclear membrane part;4.62635477514547e-12!GO:0006464;protein modification process;4.85989852381021e-12!GO:0051726;regulation of cell cycle;5.25083694554464e-12!GO:0003743;translation initiation factor activity;5.69169522951071e-12!GO:0000074;regulation of progression through cell cycle;8.87581296755245e-12!GO:0004842;ubiquitin-protein ligase activity;9.29520266387903e-12!GO:0043687;post-translational protein modification;1.0849678960911e-11!GO:0006413;translational initiation;1.47615377297278e-11!GO:0031965;nuclear membrane;2.11777807979778e-11!GO:0019787;small conjugating protein ligase activity;2.28730444605352e-11!GO:0006461;protein complex assembly;3.00442742312771e-11!GO:0016887;ATPase activity;3.25582894279476e-11!GO:0006399;tRNA metabolic process;4.38352404305813e-11!GO:0042623;ATPase activity, coupled;7.7579078694966e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.13663015120127e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.39486582746997e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;9.46680438695959e-11!GO:0009259;ribonucleotide metabolic process;1.12112686328727e-10!GO:0042981;regulation of apoptosis;3.19778301980685e-10!GO:0016881;acid-amino acid ligase activity;3.20483699540343e-10!GO:0006323;DNA packaging;3.20680529843257e-10!GO:0006913;nucleocytoplasmic transport;3.61609925019324e-10!GO:0005789;endoplasmic reticulum membrane;3.61609925019324e-10!GO:0043067;regulation of programmed cell death;3.62619986398672e-10!GO:0006446;regulation of translational initiation;3.76769835641391e-10!GO:0006364;rRNA processing;4.25017005117457e-10!GO:0015630;microtubule cytoskeleton;5.36009600304826e-10!GO:0006163;purine nucleotide metabolic process;5.49901173445761e-10!GO:0005793;ER-Golgi intermediate compartment;6.75651817765162e-10!GO:0016072;rRNA metabolic process;6.92012076143672e-10!GO:0051169;nuclear transport;7.66579346910632e-10!GO:0005643;nuclear pore;8.23097390838654e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.41859974996194e-10!GO:0009260;ribonucleotide biosynthetic process;9.67200056870971e-10!GO:0004386;helicase activity;1.01394134753274e-09!GO:0048523;negative regulation of cellular process;1.09355435139093e-09!GO:0016604;nuclear body;1.26965947939448e-09!GO:0009150;purine ribonucleotide metabolic process;1.65278285350551e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.75716127906242e-09!GO:0006333;chromatin assembly or disassembly;2.02236662282257e-09!GO:0006164;purine nucleotide biosynthetic process;2.18002903903656e-09!GO:0050794;regulation of cellular process;2.85595620747882e-09!GO:0003712;transcription cofactor activity;2.96019573950482e-09!GO:0065004;protein-DNA complex assembly;3.74942443729052e-09!GO:0051188;cofactor biosynthetic process;3.84894873096501e-09!GO:0000785;chromatin;6.58451082948583e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.58451082948583e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.59223477762495e-09!GO:0003924;GTPase activity;8.50167172009264e-09!GO:0009141;nucleoside triphosphate metabolic process;9.04312997143599e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.27438509702503e-09!GO:0008026;ATP-dependent helicase activity;1.34162956494934e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.51511659763023e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.51511659763023e-08!GO:0065002;intracellular protein transport across a membrane;1.83791923230195e-08!GO:0016779;nucleotidyltransferase activity;1.87629886441407e-08!GO:0006916;anti-apoptosis;1.95333213184517e-08!GO:0043069;negative regulation of programmed cell death;2.04676706676177e-08!GO:0008565;protein transporter activity;2.23690376797177e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.26986222413967e-08!GO:0006403;RNA localization;2.28565103436983e-08!GO:0050657;nucleic acid transport;2.31821768701581e-08!GO:0051236;establishment of RNA localization;2.31821768701581e-08!GO:0050658;RNA transport;2.31821768701581e-08!GO:0046930;pore complex;2.53434456998785e-08!GO:0015986;ATP synthesis coupled proton transport;2.69952993166384e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.69952993166384e-08!GO:0009060;aerobic respiration;2.77701282634783e-08!GO:0043066;negative regulation of apoptosis;3.04682137378477e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.13003640358409e-08!GO:0009117;nucleotide metabolic process;3.65256849292692e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.66393126773418e-08!GO:0048519;negative regulation of biological process;4.66009463836398e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.14253977559762e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.14253977559762e-08!GO:0009056;catabolic process;5.34976864268694e-08!GO:0030120;vesicle coat;6.11435980877883e-08!GO:0030662;coated vesicle membrane;6.11435980877883e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.15424698625353e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.15424698625353e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.15424698625353e-08!GO:0006334;nucleosome assembly;6.16341635133537e-08!GO:0005768;endosome;6.16341635133537e-08!GO:0006366;transcription from RNA polymerase II promoter;6.78893741877396e-08!GO:0000775;chromosome, pericentric region;8.0608555846909e-08!GO:0046034;ATP metabolic process;9.79305270464951e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.01597030163615e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.01597030163615e-07!GO:0051246;regulation of protein metabolic process;1.18602381876253e-07!GO:0019829;cation-transporting ATPase activity;1.19832855189563e-07!GO:0016740;transferase activity;1.25073517698988e-07!GO:0031497;chromatin assembly;1.40334399219808e-07!GO:0032446;protein modification by small protein conjugation;1.50061784075294e-07!GO:0043038;amino acid activation;1.52678136461351e-07!GO:0006418;tRNA aminoacylation for protein translation;1.52678136461351e-07!GO:0043039;tRNA aminoacylation;1.52678136461351e-07!GO:0017038;protein import;1.72743137789491e-07!GO:0016607;nuclear speck;1.89836515080691e-07!GO:0016567;protein ubiquitination;2.09732493409377e-07!GO:0009108;coenzyme biosynthetic process;2.10902486955842e-07!GO:0048475;coated membrane;2.33590356323977e-07!GO:0030117;membrane coat;2.33590356323977e-07!GO:0003697;single-stranded DNA binding;3.26330014155849e-07!GO:0000245;spliceosome assembly;4.43553447010591e-07!GO:0007005;mitochondrion organization and biogenesis;4.6462413737068e-07!GO:0045333;cellular respiration;4.65446520493028e-07!GO:0006099;tricarboxylic acid cycle;5.78052152442357e-07!GO:0046356;acetyl-CoA catabolic process;5.78052152442357e-07!GO:0006754;ATP biosynthetic process;6.04925923019542e-07!GO:0006753;nucleoside phosphate metabolic process;6.04925923019542e-07!GO:0006084;acetyl-CoA metabolic process;8.11897562451732e-07!GO:0043623;cellular protein complex assembly;8.72968399022505e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.14434124195689e-07!GO:0043566;structure-specific DNA binding;9.2366114456676e-07!GO:0044431;Golgi apparatus part;9.81395050560107e-07!GO:0007051;spindle organization and biogenesis;1.00204301456222e-06!GO:0031252;leading edge;1.01897743962288e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.02906173110775e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.06837202225305e-06!GO:0007010;cytoskeleton organization and biogenesis;1.17736048486806e-06!GO:0005819;spindle;1.39245588903671e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.4196297146396e-06!GO:0051028;mRNA transport;1.54336664384111e-06!GO:0051187;cofactor catabolic process;1.54336664384111e-06!GO:0000151;ubiquitin ligase complex;1.5704211925128e-06!GO:0005813;centrosome;2.52849878128913e-06!GO:0006261;DNA-dependent DNA replication;2.6357193762921e-06!GO:0050789;regulation of biological process;2.70172302210663e-06!GO:0044440;endosomal part;2.76946920209443e-06!GO:0010008;endosome membrane;2.76946920209443e-06!GO:0006793;phosphorus metabolic process;3.15279002219717e-06!GO:0006796;phosphate metabolic process;3.15279002219717e-06!GO:0016491;oxidoreductase activity;3.35197302225866e-06!GO:0009109;coenzyme catabolic process;3.84406464836088e-06!GO:0005762;mitochondrial large ribosomal subunit;4.38512229229353e-06!GO:0000315;organellar large ribosomal subunit;4.38512229229353e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.53430226355753e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.59064584791705e-06!GO:0005815;microtubule organizing center;4.80563153822322e-06!GO:0005525;GTP binding;5.09812452472594e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.29702002721215e-06!GO:0016787;hydrolase activity;6.15984560472013e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.1599905434381e-06!GO:0031988;membrane-bound vesicle;7.41317618366035e-06!GO:0005798;Golgi-associated vesicle;8.53820295289252e-06!GO:0045259;proton-transporting ATP synthase complex;8.53820295289252e-06!GO:0016568;chromatin modification;8.72754826222049e-06!GO:0005667;transcription factor complex;8.87963529706964e-06!GO:0016310;phosphorylation;9.73875064630122e-06!GO:0005788;endoplasmic reticulum lumen;9.82829381411011e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.00529903590942e-05!GO:0006613;cotranslational protein targeting to membrane;1.07145346386508e-05!GO:0006752;group transfer coenzyme metabolic process;1.24090241544969e-05!GO:0004298;threonine endopeptidase activity;1.26352015169032e-05!GO:0051329;interphase of mitotic cell cycle;1.29497367788546e-05!GO:0000075;cell cycle checkpoint;1.38284093441797e-05!GO:0051325;interphase;1.97912231851746e-05!GO:0003714;transcription corepressor activity;2.31168913222591e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.50871129667539e-05!GO:0003899;DNA-directed RNA polymerase activity;2.70688112802093e-05!GO:0045786;negative regulation of progression through cell cycle;2.87194750451749e-05!GO:0043021;ribonucleoprotein binding;3.13734763670824e-05!GO:0019899;enzyme binding;3.71074792020683e-05!GO:0032561;guanyl ribonucleotide binding;3.74249025660356e-05!GO:0019001;guanyl nucleotide binding;3.74249025660356e-05!GO:0000139;Golgi membrane;4.50457000288626e-05!GO:0031968;organelle outer membrane;4.51024674533417e-05!GO:0006302;double-strand break repair;4.51393207332545e-05!GO:0009165;nucleotide biosynthetic process;4.91484862692232e-05!GO:0016853;isomerase activity;5.22515132229015e-05!GO:0003724;RNA helicase activity;5.23391863710481e-05!GO:0051170;nuclear import;5.23483992378004e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.45118166686098e-05!GO:0019867;outer membrane;5.55682140107792e-05!GO:0008654;phospholipid biosynthetic process;6.4614097627488e-05!GO:0048522;positive regulation of cellular process;6.71056217564332e-05!GO:0005769;early endosome;7.01852495740705e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.19462981558259e-05!GO:0005905;coated pit;7.2395898097018e-05!GO:0005657;replication fork;7.89956589297807e-05!GO:0003684;damaged DNA binding;8.34188123475989e-05!GO:0030867;rough endoplasmic reticulum membrane;8.91370078079343e-05!GO:0005773;vacuole;0.000108146582523319!GO:0051168;nuclear export;0.000121682263200509!GO:0031982;vesicle;0.000125710464219655!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000126960888305929!GO:0006606;protein import into nucleus;0.000134494045861224!GO:0001558;regulation of cell growth;0.000137724194792242!GO:0008094;DNA-dependent ATPase activity;0.000139922954770777!GO:0008033;tRNA processing;0.000141971672690743!GO:0031410;cytoplasmic vesicle;0.000143851502103514!GO:0051427;hormone receptor binding;0.000145500936992542!GO:0005874;microtubule;0.000151077564866239!GO:0015980;energy derivation by oxidation of organic compounds;0.000157759290934303!GO:0016564;transcription repressor activity;0.000171381555216069!GO:0008361;regulation of cell size;0.000174015830153882!GO:0031324;negative regulation of cellular metabolic process;0.000175376702079923!GO:0007088;regulation of mitosis;0.000182503406010914!GO:0016049;cell growth;0.000186958700735265!GO:0016363;nuclear matrix;0.00021103418500142!GO:0000786;nucleosome;0.000221775895819701!GO:0005770;late endosome;0.000226901462919146!GO:0005048;signal sequence binding;0.000236148232436371!GO:0043681;protein import into mitochondrion;0.000238805123021945!GO:0044452;nucleolar part;0.000243837376527498!GO:0000314;organellar small ribosomal subunit;0.000257556668158818!GO:0005763;mitochondrial small ribosomal subunit;0.000257556668158818!GO:0042802;identical protein binding;0.000269668010000425!GO:0051789;response to protein stimulus;0.000272904210457297!GO:0006986;response to unfolded protein;0.000272904210457297!GO:0035257;nuclear hormone receptor binding;0.000310203673387678!GO:0006091;generation of precursor metabolites and energy;0.000316538377586075!GO:0008092;cytoskeletal protein binding;0.000319211110963295!GO:0006626;protein targeting to mitochondrion;0.000323898728985387!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000345359665534539!GO:0000776;kinetochore;0.000346829448826961!GO:0045454;cell redox homeostasis;0.000351075777413254!GO:0007243;protein kinase cascade;0.000356360959322974!GO:0001726;ruffle;0.000360314896759196!GO:0030880;RNA polymerase complex;0.000400076349891974!GO:0006612;protein targeting to membrane;0.000402306061201762!GO:0005741;mitochondrial outer membrane;0.000407071933027983!GO:0051252;regulation of RNA metabolic process;0.000430143421437554!GO:0003713;transcription coactivator activity;0.000435106582377392!GO:0007059;chromosome segregation;0.000442507174400024!GO:0003682;chromatin binding;0.000461420740456285!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000467447554319575!GO:0016197;endosome transport;0.00047863051435633!GO:0033116;ER-Golgi intermediate compartment membrane;0.000484164873133171!GO:0048468;cell development;0.000486492696929441!GO:0030031;cell projection biogenesis;0.000494007387768259!GO:0005885;Arp2/3 protein complex;0.000504361487825026!GO:0016044;membrane organization and biogenesis;0.000531791409900955!GO:0015631;tubulin binding;0.000548257771743923!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000548482916253572!GO:0030029;actin filament-based process;0.00056336476394703!GO:0006414;translational elongation;0.000589822164377821!GO:0007093;mitotic cell cycle checkpoint;0.00060623692889729!GO:0000323;lytic vacuole;0.000629003854070231!GO:0005764;lysosome;0.000629003854070231!GO:0004674;protein serine/threonine kinase activity;0.000641406830300827!GO:0009112;nucleobase metabolic process;0.000689091481420733!GO:0016563;transcription activator activity;0.000748211152941378!GO:0008250;oligosaccharyl transferase complex;0.000760085761413543!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000765663870188001!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.000773085880290903!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000781345876169404!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000781345876169404!GO:0006383;transcription from RNA polymerase III promoter;0.000790654860823336!GO:0051052;regulation of DNA metabolic process;0.000790952752279994!GO:0032508;DNA duplex unwinding;0.000800303186059027!GO:0032392;DNA geometric change;0.000800303186059027!GO:0003729;mRNA binding;0.000827802170497253!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000859600906010431!GO:0000428;DNA-directed RNA polymerase complex;0.000859600906010431!GO:0009892;negative regulation of metabolic process;0.00087136513668484!GO:0006310;DNA recombination;0.000986210274358732!GO:0030658;transport vesicle membrane;0.00100193702211914!GO:0006839;mitochondrial transport;0.00101407233841823!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0010259601501597!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00102960383853026!GO:0006268;DNA unwinding during replication;0.00107370203245808!GO:0051920;peroxiredoxin activity;0.00107719066341813!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00109585883524446!GO:0043065;positive regulation of apoptosis;0.00112191886631492!GO:0008186;RNA-dependent ATPase activity;0.00114403222475356!GO:0003690;double-stranded DNA binding;0.00116921174667147!GO:0043284;biopolymer biosynthetic process;0.00117907633725389!GO:0007052;mitotic spindle organization and biogenesis;0.00118254229215048!GO:0016126;sterol biosynthetic process;0.00119071824299425!GO:0003746;translation elongation factor activity;0.00125271642604227!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00133124943249549!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00133124943249549!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00133124943249549!GO:0019222;regulation of metabolic process;0.00137251744054363!GO:0043068;positive regulation of programmed cell death;0.00137443396000381!GO:0003678;DNA helicase activity;0.00139964282905036!GO:0007017;microtubule-based process;0.00140826107379041!GO:0030118;clathrin coat;0.00142983183154421!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00150916067936032!GO:0018196;peptidyl-asparagine modification;0.001575766248723!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.001575766248723!GO:0046483;heterocycle metabolic process;0.00157838143018401!GO:0030133;transport vesicle;0.00168601177737623!GO:0048500;signal recognition particle;0.00170921918218331!GO:0040008;regulation of growth;0.00172314935012816!GO:0006401;RNA catabolic process;0.00180185794805332!GO:0006402;mRNA catabolic process;0.0018464141008703!GO:0016859;cis-trans isomerase activity;0.00210415937288115!GO:0006950;response to stress;0.00210415937288115!GO:0031124;mRNA 3'-end processing;0.00218504805619931!GO:0030663;COPI coated vesicle membrane;0.0022066643590849!GO:0030126;COPI vesicle coat;0.0022066643590849!GO:0005684;U2-dependent spliceosome;0.00230267252791406!GO:0065007;biological regulation;0.00232343865954849!GO:0007264;small GTPase mediated signal transduction;0.00233142587015413!GO:0007006;mitochondrial membrane organization and biogenesis;0.0023400410150317!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00236631466680581!GO:0008047;enzyme activator activity;0.00238619092551057!GO:0043488;regulation of mRNA stability;0.00239341410549025!GO:0043487;regulation of RNA stability;0.00239341410549025!GO:0016301;kinase activity;0.00248441205951566!GO:0004576;oligosaccharyl transferase activity;0.00254376256614138!GO:0030660;Golgi-associated vesicle membrane;0.00262656917057189!GO:0035258;steroid hormone receptor binding;0.0027473372313561!GO:0048518;positive regulation of biological process;0.00275249032097667!GO:0030134;ER to Golgi transport vesicle;0.00286059657477888!GO:0008312;7S RNA binding;0.00290864572509432!GO:0051540;metal cluster binding;0.00290864572509432!GO:0051536;iron-sulfur cluster binding;0.00290864572509432!GO:0048487;beta-tubulin binding;0.00293698984960455!GO:0008632;apoptotic program;0.00295105125712691!GO:0004004;ATP-dependent RNA helicase activity;0.00295606697366143!GO:0006405;RNA export from nucleus;0.00296151730958649!GO:0046474;glycerophospholipid biosynthetic process;0.00296319632076582!GO:0051287;NAD binding;0.00311509284810349!GO:0019843;rRNA binding;0.00312058456223137!GO:0030137;COPI-coated vesicle;0.0031786053012984!GO:0030132;clathrin coat of coated pit;0.00330998624712633!GO:0000059;protein import into nucleus, docking;0.00344429540400823!GO:0006289;nucleotide-excision repair;0.00351119803571533!GO:0009116;nucleoside metabolic process;0.00354792027506105!GO:0005791;rough endoplasmic reticulum;0.00356805354502804!GO:0000910;cytokinesis;0.00374119474471526!GO:0030027;lamellipodium;0.00374961097517554!GO:0048471;perinuclear region of cytoplasm;0.00381428589406895!GO:0006695;cholesterol biosynthetic process;0.00405076231692027!GO:0051087;chaperone binding;0.00429826662876264!GO:0045792;negative regulation of cell size;0.00434585138723847!GO:0016481;negative regulation of transcription;0.00436441406414746!GO:0030119;AP-type membrane coat adaptor complex;0.00437150882838658!GO:0030176;integral to endoplasmic reticulum membrane;0.00457200431453689!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00458855198522181!GO:0006891;intra-Golgi vesicle-mediated transport;0.00458855198522181!GO:0017166;vinculin binding;0.00472959954500572!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00511343782731096!GO:0045047;protein targeting to ER;0.00511343782731096!GO:0005876;spindle microtubule;0.0051268617703124!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00516494048765136!GO:0015399;primary active transmembrane transporter activity;0.00516494048765136!GO:0030308;negative regulation of cell growth;0.00526129692237069!GO:0008139;nuclear localization sequence binding;0.00528327423044049!GO:0008180;signalosome;0.00530674854509484!GO:0031072;heat shock protein binding;0.00531317838049406!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00531923458020133!GO:0005096;GTPase activator activity;0.00544646316388971!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00553722229546431!GO:0065009;regulation of a molecular function;0.00559460299776635!GO:0008022;protein C-terminus binding;0.00587777882144098!GO:0000082;G1/S transition of mitotic cell cycle;0.00592989993173707!GO:0050662;coenzyme binding;0.00596281372198327!GO:0004527;exonuclease activity;0.00601191164988977!GO:0006984;ER-nuclear signaling pathway;0.00616014022767548!GO:0006378;mRNA polyadenylation;0.00616014022767548!GO:0045045;secretory pathway;0.00652031158072375!GO:0042770;DNA damage response, signal transduction;0.00654618445296861!GO:0030125;clathrin vesicle coat;0.00655423725228303!GO:0030665;clathrin coated vesicle membrane;0.00655423725228303!GO:0046467;membrane lipid biosynthetic process;0.0067694720238462!GO:0003711;transcription elongation regulator activity;0.00691685950018491!GO:0006220;pyrimidine nucleotide metabolic process;0.00692824697330199!GO:0046489;phosphoinositide biosynthetic process;0.00693442126885858!GO:0030521;androgen receptor signaling pathway;0.00697908474002968!GO:0019206;nucleoside kinase activity;0.00699684193758946!GO:0006595;polyamine metabolic process;0.0071025126530468!GO:0004177;aminopeptidase activity;0.00761019954357872!GO:0032984;macromolecular complex disassembly;0.0077533854639055!GO:0031123;RNA 3'-end processing;0.0077533854639055!GO:0016272;prefoldin complex;0.0077940937102217!GO:0030131;clathrin adaptor complex;0.00808136638155366!GO:0006284;base-excision repair;0.00822961123025885!GO:0005832;chaperonin-containing T-complex;0.00837542286252506!GO:0030032;lamellipodium biogenesis;0.00849265309439875!GO:0043624;cellular protein complex disassembly;0.00864280250621996!GO:0006818;hydrogen transport;0.00891454379309225!GO:0030127;COPII vesicle coat;0.00932758421161471!GO:0012507;ER to Golgi transport vesicle membrane;0.00932758421161471!GO:0043241;protein complex disassembly;0.009462150540382!GO:0015992;proton transport;0.00957376022129755!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00959273011823636!GO:0006354;RNA elongation;0.00989449966097465!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00989922417648467!GO:0000049;tRNA binding;0.0100717650754223!GO:0044262;cellular carbohydrate metabolic process;0.0100717650754223!GO:0006144;purine base metabolic process;0.0101008270553756!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0102138775142284!GO:0000209;protein polyubiquitination;0.010216040144448!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0105291780945331!GO:0031901;early endosome membrane;0.0109428035208131!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0109955992202051!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0109955992202051!GO:0005869;dynactin complex;0.0113593774992916!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0114184498779189!GO:0047485;protein N-terminus binding;0.0114660198092989!GO:0005862;muscle thin filament tropomyosin;0.0120681987924134!GO:0006778;porphyrin metabolic process;0.0122160654996023!GO:0033013;tetrapyrrole metabolic process;0.0122160654996023!GO:0043022;ribosome binding;0.0122962706874886!GO:0030659;cytoplasmic vesicle membrane;0.0122962706874886!GO:0006509;membrane protein ectodomain proteolysis;0.0122962706874886!GO:0033619;membrane protein proteolysis;0.0122962706874886!GO:0009262;deoxyribonucleotide metabolic process;0.0125397549968497!GO:0016408;C-acyltransferase activity;0.0127027975188246!GO:0050681;androgen receptor binding;0.0128295881313546!GO:0006733;oxidoreduction coenzyme metabolic process;0.0133846035424359!GO:0007050;cell cycle arrest;0.0135441135738609!GO:0006740;NADPH regeneration;0.013591206540615!GO:0006098;pentose-phosphate shunt;0.013591206540615!GO:0007021;tubulin folding;0.0140623552419891!GO:0006611;protein export from nucleus;0.0140895587863184!GO:0031570;DNA integrity checkpoint;0.0142233978120212!GO:0006650;glycerophospholipid metabolic process;0.0143661454206126!GO:0008610;lipid biosynthetic process;0.0144649870917078!GO:0008243;plasminogen activator activity;0.0145707210314935!GO:0051539;4 iron, 4 sulfur cluster binding;0.0146658483498914!GO:0031625;ubiquitin protein ligase binding;0.0148221204568816!GO:0007346;regulation of progression through mitotic cell cycle;0.015336073614677!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0155254535603324!GO:0004518;nuclease activity;0.0155254535603324!GO:0008629;induction of apoptosis by intracellular signals;0.0157916182076676!GO:0000339;RNA cap binding;0.0160360462082367!GO:0006376;mRNA splice site selection;0.0163043043480774!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0163043043480774!GO:0045893;positive regulation of transcription, DNA-dependent;0.0163289779067482!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0163377119623492!GO:0006352;transcription initiation;0.0165252537225118!GO:0045941;positive regulation of transcription;0.0165252537225118!GO:0006897;endocytosis;0.0177135934514199!GO:0010324;membrane invagination;0.0177135934514199!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0182790643084239!GO:0032200;telomere organization and biogenesis;0.0184540392350099!GO:0000723;telomere maintenance;0.0184540392350099!GO:0007034;vacuolar transport;0.0187828723858967!GO:0006275;regulation of DNA replication;0.0189911815115767!GO:0043596;nuclear replication fork;0.019016662094444!GO:0005637;nuclear inner membrane;0.0193324771617434!GO:0044433;cytoplasmic vesicle part;0.0194405318986196!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0194725700278722!GO:0005100;Rho GTPase activator activity;0.0204444204782486!GO:0008601;protein phosphatase type 2A regulator activity;0.0208089856124725!GO:0006270;DNA replication initiation;0.0208305878808966!GO:0042168;heme metabolic process;0.0208305878808966!GO:0006417;regulation of translation;0.0208650700400526!GO:0031902;late endosome membrane;0.0211391073956893!GO:0045926;negative regulation of growth;0.0213485459929179!GO:0004748;ribonucleoside-diphosphate reductase activity;0.021574035849526!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.021574035849526!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0217389832296577!GO:0006769;nicotinamide metabolic process;0.0217483974861379!GO:0000902;cell morphogenesis;0.0217483974861379!GO:0032989;cellular structure morphogenesis;0.0217483974861379!GO:0022890;inorganic cation transmembrane transporter activity;0.0218802894774695!GO:0051656;establishment of organelle localization;0.0229912506371692!GO:0030518;steroid hormone receptor signaling pathway;0.0229912506371692!GO:0043492;ATPase activity, coupled to movement of substances;0.0230057329286377!GO:0031529;ruffle organization and biogenesis;0.0231581511024739!GO:0008538;proteasome activator activity;0.0233981688194109!GO:0009451;RNA modification;0.0234297536082656!GO:0000070;mitotic sister chromatid segregation;0.0239786317279874!GO:0009119;ribonucleoside metabolic process;0.023992747052786!GO:0000781;chromosome, telomeric region;0.0243393568031434!GO:0033673;negative regulation of kinase activity;0.0246443546288091!GO:0006469;negative regulation of protein kinase activity;0.0246443546288091!GO:0016584;nucleosome positioning;0.0247363919913508!GO:0031970;organelle envelope lumen;0.0248675285272373!GO:0042393;histone binding;0.0253358845636386!GO:0006892;post-Golgi vesicle-mediated transport;0.0257180888878567!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0259620914741136!GO:0005938;cell cortex;0.026396607912074!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0268047895851442!GO:0015002;heme-copper terminal oxidase activity;0.0268047895851442!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0268047895851442!GO:0004129;cytochrome-c oxidase activity;0.0268047895851442!GO:0007265;Ras protein signal transduction;0.0268852963863715!GO:0046519;sphingoid metabolic process;0.0272306492297247!GO:0043189;H4/H2A histone acetyltransferase complex;0.027283456728258!GO:0006672;ceramide metabolic process;0.027283456728258!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0278564163518183!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0279405848090733!GO:0005758;mitochondrial intermembrane space;0.0279834706828322!GO:0000819;sister chromatid segregation;0.028412436921413!GO:0031577;spindle checkpoint;0.028663195381637!GO:0009303;rRNA transcription;0.0294075820536594!GO:0033559;unsaturated fatty acid metabolic process;0.0295414926277249!GO:0006636;unsaturated fatty acid biosynthetic process;0.0295414926277249!GO:0008234;cysteine-type peptidase activity;0.0296084134593925!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.02981400669692!GO:0012506;vesicle membrane;0.0304128646538226!GO:0043631;RNA polyadenylation;0.0307984819462178!GO:0051348;negative regulation of transferase activity;0.0313203451458475!GO:0006979;response to oxidative stress;0.031853692037135!GO:0016741;transferase activity, transferring one-carbon groups;0.031853692037135!GO:0000726;non-recombinational repair;0.0320771171278399!GO:0006779;porphyrin biosynthetic process;0.0320771171278399!GO:0033014;tetrapyrrole biosynthetic process;0.0320771171278399!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0320771171278399!GO:0009967;positive regulation of signal transduction;0.0321649983022268!GO:0016407;acetyltransferase activity;0.0321649983022268!GO:0004532;exoribonuclease activity;0.0321649983022268!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0321649983022268!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0321711301296719!GO:0031371;ubiquitin conjugating enzyme complex;0.0324360131188526!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0325952570490808!GO:0003923;GPI-anchor transamidase activity;0.0325952570490808!GO:0016255;attachment of GPI anchor to protein;0.0325952570490808!GO:0042765;GPI-anchor transamidase complex;0.0325952570490808!GO:0030496;midbody;0.0326845247012731!GO:0004523;ribonuclease H activity;0.0326900753533894!GO:0000792;heterochromatin;0.0328704203926626!GO:0030384;phosphoinositide metabolic process;0.0334889257443267!GO:0005092;GDP-dissociation inhibitor activity;0.033686706433517!GO:0000725;recombinational repair;0.0338992817768635!GO:0000724;double-strand break repair via homologous recombination;0.0338992817768635!GO:0005784;translocon complex;0.0339385997411896!GO:0004003;ATP-dependent DNA helicase activity;0.0341287811778233!GO:0006917;induction of apoptosis;0.0341287811778233!GO:0000077;DNA damage checkpoint;0.0345213824371495!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0345213824371495!GO:0046112;nucleobase biosynthetic process;0.0346154646801392!GO:0022406;membrane docking;0.0346548390125758!GO:0048278;vesicle docking;0.0346548390125758!GO:0008168;methyltransferase activity;0.0349956206485479!GO:0000118;histone deacetylase complex;0.0352400529633345!GO:0042026;protein refolding;0.0353388146072004!GO:0006400;tRNA modification;0.03568858065524!GO:0009124;nucleoside monophosphate biosynthetic process;0.0358814152953968!GO:0009123;nucleoside monophosphate metabolic process;0.0358814152953968!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0365982731076176!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0370673326990597!GO:0008017;microtubule binding;0.0379674073931037!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0379777955006051!GO:0010257;NADH dehydrogenase complex assembly;0.0379777955006051!GO:0033108;mitochondrial respiratory chain complex assembly;0.0379777955006051!GO:0005083;small GTPase regulator activity;0.0381342263798311!GO:0035035;histone acetyltransferase binding;0.0381342263798311!GO:0030695;GTPase regulator activity;0.0381807022531!GO:0051537;2 iron, 2 sulfur cluster binding;0.039103182688676!GO:0017134;fibroblast growth factor binding;0.0392771689939803!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0393229615037993!GO:0031323;regulation of cellular metabolic process;0.0393968169255426!GO:0012502;induction of programmed cell death;0.0394197119372325!GO:0019362;pyridine nucleotide metabolic process;0.0394893624695901!GO:0006767;water-soluble vitamin metabolic process;0.0396291333442462!GO:0043601;nuclear replisome;0.0400353871963857!GO:0030894;replisome;0.0400353871963857!GO:0035267;NuA4 histone acetyltransferase complex;0.0403123166304525!GO:0006904;vesicle docking during exocytosis;0.0406974205835233!GO:0006007;glucose catabolic process;0.0413655874558357!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0422339492931492!GO:0043130;ubiquitin binding;0.0429506165420374!GO:0032182;small conjugating protein binding;0.0429506165420374!GO:0000178;exosome (RNase complex);0.0433960349651732!GO:0000922;spindle pole;0.0436818840201923!GO:0030433;ER-associated protein catabolic process;0.0437439348666085!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0437439348666085!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0441577461733079!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0444725775278208!GO:0006497;protein amino acid lipidation;0.0444725775278208!GO:0051338;regulation of transferase activity;0.0444725775278208!GO:0008287;protein serine/threonine phosphatase complex;0.0445252553067184!GO:0048037;cofactor binding;0.0445459936405255!GO:0008408;3'-5' exonuclease activity;0.0448055558068649!GO:0006213;pyrimidine nucleoside metabolic process;0.0448275305205913!GO:0000152;nuclear ubiquitin ligase complex;0.0456631155117403!GO:0005669;transcription factor TFIID complex;0.0457016980555873!GO:0008637;apoptotic mitochondrial changes;0.0460598503325251!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0461546395607543!GO:0016251;general RNA polymerase II transcription factor activity;0.0465964033225387!GO:0007242;intracellular signaling cascade;0.0468342211074064!GO:0006541;glutamine metabolic process;0.0468436605484422!GO:0007040;lysosome organization and biogenesis;0.0469512825803819!GO:0032906;transforming growth factor-beta2 production;0.0470157390344706!GO:0032909;regulation of transforming growth factor-beta2 production;0.0470157390344706!GO:0000228;nuclear chromosome;0.0479700554893014!GO:0030911;TPR domain binding;0.0479700554893014!GO:0032940;secretion by cell;0.0481668975159818!GO:0051098;regulation of binding;0.0481668975159818!GO:0007033;vacuole organization and biogenesis;0.0481792304901225!GO:0003779;actin binding;0.0490010368789137!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0492325238226531!GO:0022415;viral reproductive process;0.0492325238226531!GO:0006338;chromatin remodeling;0.0499597196429877 | |||
|sample_id=10847 | |sample_id=10847 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=TFDP1:1.44486769724;PDX1:1.4385495834;HSF1,2:1.39778702021;ARID5B:1.37963097719;NKX3-1:1.33402138999;AIRE:1.08150190429;ADNP_IRX_SIX_ZHX:1.04688977828;NFE2L1:1.03203528966;TP53:1.00758336219;FOX{I1,J2}:0.959635149258;POU1F1:0.940296938632;E2F1..5:0.932474812081;HOXA9_MEIS1:0.911455793957;bHLH_family:0.894145235776;XCPE1{core}:0.860909477493;TEAD1:0.817972161919;HES1:0.815348829854;HOX{A4,D4}:0.763520981313;PAX5:0.761649335847;EN1,2:0.735355891352;ZBTB16:0.717428121985;GZF1:0.686557153779;FOXQ1:0.684823346718;GFI1:0.643260896806;NKX3-2:0.609570670525;ZNF143:0.594684442409;UFEwm:0.536014111829;POU5F1:0.534255279927;HOX{A5,B5}:0.524653234212;TEF:0.505860980999;ZBTB6:0.505225486431;GCM1,2:0.497188187619;PAX6:0.490149149465;EVI1:0.4847449107;HBP1_HMGB_SSRP1_UBTF:0.463724630683;GATA4:0.458824537335;NFY{A,B,C}:0.458422032751;GFI1B:0.454303758438;EP300:0.45232341736;FOXL1:0.417660943989;HLF:0.400257056358;RXRA_VDR{dimer}:0.377149081428;OCT4_SOX2{dimer}:0.364169611273;BREu{core}:0.350150807105;TFAP2B:0.345229847431;SP1:0.342229903093;HIC1:0.306848744969;POU3F1..4:0.294844864804;MYB:0.286161847113;BACH2:0.286104103168;HOX{A6,A7,B6,B7}:0.256627122463;SPZ1:0.253067453996;ONECUT1,2:0.249451674974;NFIX:0.248345396184;MZF1:0.242873322117;FOXM1:0.222867512406;NFE2:0.215212821891;FOS_FOS{B,L1}_JUN{B,D}:0.190462312363;ZIC1..3:0.179212123649;STAT5{A,B}:0.172471282074;SRF:0.151820901648;NR3C1:0.142829089775;EGR1..3:0.135975610105;KLF4:0.134635733026;NRF1:0.125635666033;PRRX1,2:0.116445424101;FOSL2:0.109967633431;CDX1,2,4:0.105750137073;STAT2,4,6:0.0982789851432;ELK1,4_GABP{A,B1}:0.0837227768712;LHX3,4:0.0735543821551;CDC5L:0.0471448133692;TLX1..3_NFIC{dimer}:0.0470718877775;RXR{A,B,G}:0.0438948677022;PRDM1:0.0399761206336;ZNF384:0.0398899607252;ZFP161:0.0193566259983;MAFB:0.0080453002126;LEF1_TCF7_TCF7L1,2:0.00770367630673;MTF1:-0.00345527929072;GTF2A1,2:-0.0096497736066;FOXD3:-0.0115325672034;SOX{8,9,10}:-0.0177177120925;DMAP1_NCOR{1,2}_SMARC:-0.0247710529092;MTE{core}:-0.036273275198;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0443148307693;IKZF2:-0.045439146957;NR6A1:-0.0495670701542;GTF2I:-0.0540012217186;MAZ:-0.0574556646518;LMO2:-0.0742059092692;FOXO1,3,4:-0.0827548755488;MYBL2:-0.108967872307;CEBPA,B_DDIT3:-0.109389847828;NKX2-1,4:-0.117473838884;PAX4:-0.120640304364;TBP:-0.122262930143;HMX1:-0.130386209847;HNF1A:-0.137205507108;AHR_ARNT_ARNT2:-0.139442975632;ESRRA:-0.14508446858;SNAI1..3:-0.161990231826;PPARG:-0.167629694765;ZNF148:-0.16956464707;NKX2-2,8:-0.177859794773;HMGA1,2:-0.186156030316;HNF4A_NR2F1,2:-0.191462327107;PITX1..3:-0.1917083608;RBPJ:-0.221945158345;MED-1{core}:-0.23002804459;TOPORS:-0.254047098192;FOXA2:-0.264405359184;CUX2:-0.268527443054;EBF1:-0.270732613335;IRF1,2:-0.27095566121;NFE2L2:-0.283029620496;SOX17:-0.284294926398;PAX1,9:-0.298254818929;AR:-0.298351854258;ALX1:-0.301702136832;MYOD1:-0.316224599806;ESR1:-0.31875752897;PATZ1:-0.326940542072;TFAP4:-0.338978538677;ETS1,2:-0.351333365067;SPIB:-0.35161804774;NFATC1..3:-0.36396301368;IRF7:-0.366011882333;RREB1:-0.367161252034;YY1:-0.374488714262;POU2F1..3:-0.376415344182;NFKB1_REL_RELA:-0.377757917508;ELF1,2,4:-0.384052878323;GATA6:-0.386418847927;FOXP1:-0.395536383417;PAX3,7:-0.39910147962;XBP1:-0.403012041519;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.432603626229;HIF1A:-0.434096264403;TFCP2:-0.436200296939;RFX1:-0.43774745483;RUNX1..3:-0.440267688168;PBX1:-0.45762997921;JUN:-0.463757292397;TAL1_TCF{3,4,12}:-0.464704990996;SMAD1..7,9:-0.477083446808;NHLH1,2:-0.485051043712;T:-0.490623778389;REST:-0.512262622864;IKZF1:-0.516745853241;NFIL3:-0.551100108705;MYFfamily:-0.554545546592;TBX4,5:-0.555598811228;MEF2{A,B,C,D}:-0.557136187797;ZEB1:-0.558050013082;ATF6:-0.571968711614;SPI1:-0.580903263158;ATF5_CREB3:-0.610685519137;POU6F1:-0.622148889641;ALX4:-0.624605419632;ZNF423:-0.642478248235;TFAP2{A,C}:-0.662066110439;NKX6-1,2:-0.665671910682;STAT1,3:-0.684338494165;NR1H4:-0.686160569883;SOX2:-0.693815263425;PAX8:-0.716790168064;TGIF1:-0.725857434217;NR5A1,2:-0.730134184036;NANOG:-0.795087095433;VSX1,2:-0.799945876108;RFX2..5_RFXANK_RFXAP:-0.815881018388;FOX{D1,D2}:-0.819902084737;GLI1..3:-0.832770558198;FOX{F1,F2,J1}:-0.840220584707;CREB1:-0.856649961255;NKX2-3_NKX2-5:-0.864186974329;DBP:-0.872560656038;ATF4:-0.890090852687;FOXN1:-0.905937305792;SREBF1,2:-0.915667481986;ZNF238:-0.95605716299;PAX2:-0.956086665857;SOX5:-0.982861951911;FOXP3:-0.984467286471;ATF2:-1.03506172092;HAND1,2:-1.04939390214;CRX:-1.11626567004;BPTF:-1.30238790445;RORA:-1.50136896424;TLX2:-2.05107233745;NANOG{mouse}:-2.26567323441 | |top_motifs=TFDP1:1.44486769724;PDX1:1.4385495834;HSF1,2:1.39778702021;ARID5B:1.37963097719;NKX3-1:1.33402138999;AIRE:1.08150190429;ADNP_IRX_SIX_ZHX:1.04688977828;NFE2L1:1.03203528966;TP53:1.00758336219;FOX{I1,J2}:0.959635149258;POU1F1:0.940296938632;E2F1..5:0.932474812081;HOXA9_MEIS1:0.911455793957;bHLH_family:0.894145235776;XCPE1{core}:0.860909477493;TEAD1:0.817972161919;HES1:0.815348829854;HOX{A4,D4}:0.763520981313;PAX5:0.761649335847;EN1,2:0.735355891352;ZBTB16:0.717428121985;GZF1:0.686557153779;FOXQ1:0.684823346718;GFI1:0.643260896806;NKX3-2:0.609570670525;ZNF143:0.594684442409;UFEwm:0.536014111829;POU5F1:0.534255279927;HOX{A5,B5}:0.524653234212;TEF:0.505860980999;ZBTB6:0.505225486431;GCM1,2:0.497188187619;PAX6:0.490149149465;EVI1:0.4847449107;HBP1_HMGB_SSRP1_UBTF:0.463724630683;GATA4:0.458824537335;NFY{A,B,C}:0.458422032751;GFI1B:0.454303758438;EP300:0.45232341736;FOXL1:0.417660943989;HLF:0.400257056358;RXRA_VDR{dimer}:0.377149081428;OCT4_SOX2{dimer}:0.364169611273;BREu{core}:0.350150807105;TFAP2B:0.345229847431;SP1:0.342229903093;HIC1:0.306848744969;POU3F1..4:0.294844864804;MYB:0.286161847113;BACH2:0.286104103168;HOX{A6,A7,B6,B7}:0.256627122463;SPZ1:0.253067453996;ONECUT1,2:0.249451674974;NFIX:0.248345396184;MZF1:0.242873322117;FOXM1:0.222867512406;NFE2:0.215212821891;FOS_FOS{B,L1}_JUN{B,D}:0.190462312363;ZIC1..3:0.179212123649;STAT5{A,B}:0.172471282074;SRF:0.151820901648;NR3C1:0.142829089775;EGR1..3:0.135975610105;KLF4:0.134635733026;NRF1:0.125635666033;PRRX1,2:0.116445424101;FOSL2:0.109967633431;CDX1,2,4:0.105750137073;STAT2,4,6:0.0982789851432;ELK1,4_GABP{A,B1}:0.0837227768712;LHX3,4:0.0735543821551;CDC5L:0.0471448133692;TLX1..3_NFIC{dimer}:0.0470718877775;RXR{A,B,G}:0.0438948677022;PRDM1:0.0399761206336;ZNF384:0.0398899607252;ZFP161:0.0193566259983;MAFB:0.0080453002126;LEF1_TCF7_TCF7L1,2:0.00770367630673;MTF1:-0.00345527929072;GTF2A1,2:-0.0096497736066;FOXD3:-0.0115325672034;SOX{8,9,10}:-0.0177177120925;DMAP1_NCOR{1,2}_SMARC:-0.0247710529092;MTE{core}:-0.036273275198;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0443148307693;IKZF2:-0.045439146957;NR6A1:-0.0495670701542;GTF2I:-0.0540012217186;MAZ:-0.0574556646518;LMO2:-0.0742059092692;FOXO1,3,4:-0.0827548755488;MYBL2:-0.108967872307;CEBPA,B_DDIT3:-0.109389847828;NKX2-1,4:-0.117473838884;PAX4:-0.120640304364;TBP:-0.122262930143;HMX1:-0.130386209847;HNF1A:-0.137205507108;AHR_ARNT_ARNT2:-0.139442975632;ESRRA:-0.14508446858;SNAI1..3:-0.161990231826;PPARG:-0.167629694765;ZNF148:-0.16956464707;NKX2-2,8:-0.177859794773;HMGA1,2:-0.186156030316;HNF4A_NR2F1,2:-0.191462327107;PITX1..3:-0.1917083608;RBPJ:-0.221945158345;MED-1{core}:-0.23002804459;TOPORS:-0.254047098192;FOXA2:-0.264405359184;CUX2:-0.268527443054;EBF1:-0.270732613335;IRF1,2:-0.27095566121;NFE2L2:-0.283029620496;SOX17:-0.284294926398;PAX1,9:-0.298254818929;AR:-0.298351854258;ALX1:-0.301702136832;MYOD1:-0.316224599806;ESR1:-0.31875752897;PATZ1:-0.326940542072;TFAP4:-0.338978538677;ETS1,2:-0.351333365067;SPIB:-0.35161804774;NFATC1..3:-0.36396301368;IRF7:-0.366011882333;RREB1:-0.367161252034;YY1:-0.374488714262;POU2F1..3:-0.376415344182;NFKB1_REL_RELA:-0.377757917508;ELF1,2,4:-0.384052878323;GATA6:-0.386418847927;FOXP1:-0.395536383417;PAX3,7:-0.39910147962;XBP1:-0.403012041519;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.432603626229;HIF1A:-0.434096264403;TFCP2:-0.436200296939;RFX1:-0.43774745483;RUNX1..3:-0.440267688168;PBX1:-0.45762997921;JUN:-0.463757292397;TAL1_TCF{3,4,12}:-0.464704990996;SMAD1..7,9:-0.477083446808;NHLH1,2:-0.485051043712;T:-0.490623778389;REST:-0.512262622864;IKZF1:-0.516745853241;NFIL3:-0.551100108705;MYFfamily:-0.554545546592;TBX4,5:-0.555598811228;MEF2{A,B,C,D}:-0.557136187797;ZEB1:-0.558050013082;ATF6:-0.571968711614;SPI1:-0.580903263158;ATF5_CREB3:-0.610685519137;POU6F1:-0.622148889641;ALX4:-0.624605419632;ZNF423:-0.642478248235;TFAP2{A,C}:-0.662066110439;NKX6-1,2:-0.665671910682;STAT1,3:-0.684338494165;NR1H4:-0.686160569883;SOX2:-0.693815263425;PAX8:-0.716790168064;TGIF1:-0.725857434217;NR5A1,2:-0.730134184036;NANOG:-0.795087095433;VSX1,2:-0.799945876108;RFX2..5_RFXANK_RFXAP:-0.815881018388;FOX{D1,D2}:-0.819902084737;GLI1..3:-0.832770558198;FOX{F1,F2,J1}:-0.840220584707;CREB1:-0.856649961255;NKX2-3_NKX2-5:-0.864186974329;DBP:-0.872560656038;ATF4:-0.890090852687;FOXN1:-0.905937305792;SREBF1,2:-0.915667481986;ZNF238:-0.95605716299;PAX2:-0.956086665857;SOX5:-0.982861951911;FOXP3:-0.984467286471;ATF2:-1.03506172092;HAND1,2:-1.04939390214;CRX:-1.11626567004;BPTF:-1.30238790445;RORA:-1.50136896424;TLX2:-2.05107233745;NANOG{mouse}:-2.26567323441 | ||
|xref= | |||
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Latest revision as of 15:09, 3 June 2020
| Name: | mesothelioma cell line:NCI-H2052 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13063 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13063
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13063
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.163 |
| 10 | 10 | 0.105 |
| 100 | 100 | 0.793 |
| 101 | 101 | 0.175 |
| 102 | 102 | 0.784 |
| 103 | 103 | 0.785 |
| 104 | 104 | 0.396 |
| 105 | 105 | 0.0422 |
| 106 | 106 | 0.287 |
| 107 | 107 | 0.74 |
| 108 | 108 | 0.999 |
| 109 | 109 | 0.664 |
| 11 | 11 | 0.222 |
| 110 | 110 | 0.401 |
| 111 | 111 | 0.555 |
| 112 | 112 | 0.0326 |
| 113 | 113 | 9.84752e-4 |
| 114 | 114 | 0.162 |
| 115 | 115 | 0.676 |
| 116 | 116 | 0.989 |
| 117 | 117 | 0.012 |
| 118 | 118 | 0.98 |
| 119 | 119 | 0.165 |
| 12 | 12 | 0.214 |
| 120 | 120 | 0.833 |
| 121 | 121 | 0.496 |
| 122 | 122 | 0.684 |
| 123 | 123 | 0.00614 |
| 124 | 124 | 0.424 |
| 125 | 125 | 0.516 |
| 126 | 126 | 0.333 |
| 127 | 127 | 0.208 |
| 128 | 128 | 0.121 |
| 129 | 129 | 0.677 |
| 13 | 13 | 0.533 |
| 130 | 130 | 0.585 |
| 131 | 131 | 0.692 |
| 132 | 132 | 0.278 |
| 133 | 133 | 0.68 |
| 134 | 134 | 0.679 |
| 135 | 135 | 0.313 |
| 136 | 136 | 0.32 |
| 137 | 137 | 0.852 |
| 138 | 138 | 0.92 |
| 139 | 139 | 2.61306e-4 |
| 14 | 14 | 0.138 |
| 140 | 140 | 0.831 |
| 141 | 141 | 0.152 |
| 142 | 142 | 0.0317 |
| 143 | 143 | 0.74 |
| 144 | 144 | 0.857 |
| 145 | 145 | 0.145 |
| 146 | 146 | 0.32 |
| 147 | 147 | 0.475 |
| 148 | 148 | 0.503 |
| 149 | 149 | 0.405 |
| 15 | 15 | 0.249 |
| 150 | 150 | 0.387 |
| 151 | 151 | 0.544 |
| 152 | 152 | 0.74 |
| 153 | 153 | 0.364 |
| 154 | 154 | 0.76 |
| 155 | 155 | 0.00755 |
| 156 | 156 | 0.605 |
| 157 | 157 | 0.893 |
| 158 | 158 | 0.0778 |
| 159 | 159 | 0.424 |
| 16 | 16 | 0.782 |
| 160 | 160 | 0.423 |
| 161 | 161 | 0.311 |
| 162 | 162 | 0.39 |
| 163 | 163 | 0.0515 |
| 164 | 164 | 0.897 |
| 165 | 165 | 0.44 |
| 166 | 166 | 0.625 |
| 167 | 167 | 0.25 |
| 168 | 168 | 0.396 |
| 169 | 169 | 0.224 |
| 17 | 17 | 0.947 |
| 18 | 18 | 0.694 |
| 19 | 19 | 0.149 |
| 2 | 2 | 0.602 |
| 20 | 20 | 0.866 |
| 21 | 21 | 0.393 |
| 22 | 22 | 0.589 |
| 23 | 23 | 0.214 |
| 24 | 24 | 0.493 |
| 25 | 25 | 0.321 |
| 26 | 26 | 0.29 |
| 27 | 27 | 0.732 |
| 28 | 28 | 0.833 |
| 29 | 29 | 0.722 |
| 3 | 3 | 0.0999 |
| 30 | 30 | 0.724 |
| 31 | 31 | 0.634 |
| 32 | 32 | 0.0153 |
| 33 | 33 | 0.757 |
| 34 | 34 | 0.54 |
| 35 | 35 | 0.0243 |
| 36 | 36 | 0.258 |
| 37 | 37 | 0.323 |
| 38 | 38 | 0.245 |
| 39 | 39 | 0.932 |
| 4 | 4 | 0.232 |
| 40 | 40 | 0.871 |
| 41 | 41 | 0.349 |
| 42 | 42 | 0.23 |
| 43 | 43 | 0.0352 |
| 44 | 44 | 0.894 |
| 45 | 45 | 0.38 |
| 46 | 46 | 0.357 |
| 47 | 47 | 0.308 |
| 48 | 48 | 0.624 |
| 49 | 49 | 0.0313 |
| 5 | 5 | 0.018 |
| 50 | 50 | 0.899 |
| 51 | 51 | 0.604 |
| 52 | 52 | 0.705 |
| 53 | 53 | 0.486 |
| 54 | 54 | 0.612 |
| 55 | 55 | 0.529 |
| 56 | 56 | 0.599 |
| 57 | 57 | 0.991 |
| 58 | 58 | 0.0784 |
| 59 | 59 | 0.12 |
| 6 | 6 | 0.52 |
| 60 | 60 | 0.0417 |
| 61 | 61 | 0.644 |
| 62 | 62 | 0.0477 |
| 63 | 63 | 0.318 |
| 64 | 64 | 0.487 |
| 65 | 65 | 0.243 |
| 66 | 66 | 0.0952 |
| 67 | 67 | 0.713 |
| 68 | 68 | 0.714 |
| 69 | 69 | 0.179 |
| 7 | 7 | 0.0937 |
| 70 | 70 | 0.0214 |
| 71 | 71 | 0.364 |
| 72 | 72 | 0.19 |
| 73 | 73 | 0.999 |
| 74 | 74 | 0.977 |
| 75 | 75 | 0.156 |
| 76 | 76 | 0.999 |
| 77 | 77 | 0.617 |
| 78 | 78 | 0.467 |
| 79 | 79 | 0.62 |
| 8 | 8 | 0.972 |
| 80 | 80 | 0.043 |
| 81 | 81 | 0.721 |
| 82 | 82 | 0.0118 |
| 83 | 83 | 0.93 |
| 84 | 84 | 0.194 |
| 85 | 85 | 0.00505 |
| 86 | 86 | 0.0675 |
| 87 | 87 | 0.234 |
| 88 | 88 | 0.189 |
| 89 | 89 | 0.167 |
| 9 | 9 | 0.377 |
| 90 | 90 | 0.249 |
| 91 | 91 | 0.137 |
| 92 | 92 | 0.0478 |
| 93 | 93 | 0.453 |
| 94 | 94 | 0.385 |
| 95 | 95 | 0.827 |
| 96 | 96 | 0.196 |
| 97 | 97 | 0.548 |
| 98 | 98 | 0.308 |
| 99 | 99 | 0.0703 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13063
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
FF:0103764 NCI cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
