FF:10023-101D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005588 | ||
|accession_numbers=CAGE;DRX008720;DRR009592;DRZ001017;DRZ002402;DRZ012367;DRZ013752 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010023 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10023-101D5 | |id=FF:10023-101D5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010023 | ||
|is_obsolete= | |||
|library_id=CNhs10629 | |||
|library_id_phase_based=2:CNhs10629 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10023 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10023 | |||
|name=skeletal muscle, adult, pool1 | |name=skeletal muscle, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10629,LSID657,release008,COMPLETED | |profile_hcage=CNhs10629,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.499125840344178,0,-0.0437141308270056,0.208435132528748,0.464353722313982,-0.282403560576942,0,0.0424427259395948,0,0.0424427259395948,0,0,0,0,0,0.0424427259395948,0,0,0,-0.0722186247355627,0,0,0,0.0405521928064325,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0405521928064325,0,0,0,0,0,0.0482823791406692,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.0549009012735022,0,0,0,0,0,0,0,0,0.081104385612865,0,0,0,0,0,0,0,0,0,0.0405521928064325,0,0,0,0,0.0352964245311771,0.0104284136227702,0.0405521928064325,0,0.0610332831576094,0.191617716615595,-0.0177447530489295,0,0.081104385612865,0,0.081104385612865,-0.0169309656248415,-0.117255837831098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516411196177845,0,0,0,0.199923144688504,0.250620140717062,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0169309656248415,0,0.081104385612865,0.081104385612865,0,0,0.081104385612865,0,0,0.081104385612865,0,0,0.191405827654903,0.0170429889248437,0.0106770199632711,0.00590450856034738,0,0,0.123346339974141,0,0.149419651083819,0,0.0119009772953217,0,0,0,0.081104385612865,0,0.156077359384626,0,0.889092249975375,0,0,0,0,0,0.0814330683954711,0,0.0098497131359092,0.111584798607248,0,0.0424427259395948,0,0,0.09628873574655,0,-0.00427558453436011,-0.0402774423838225,0.0424427259395948,-0.183815011669122,0.025391888831683,0,0,0,-0.293790675702281,-0.40773107617179,0,0,-0.0634779021221835,0.443361275093403,0,0.0424427259395948,0.93157257908189,0.0424427259395948,0.0911373128511823,-0.0350412818428821,0,-0.0403711155703572,0,0,0,0,0,0,0,0,0.116603899259381,0,0,0.763797471954986,-0.0918037701917423,-0.0091886178677811,0,0,0,0.224666338047768,0.0424427259395948,0,0.0652985469839009,0.0586030165459545,0.0463357151862965,0.0450197240631901,0,0.369325510401274,0.396028471209511,0.224555187649255,0.317294391241802,0.0610332831576094,-0.108877333936982,0.0526522542365224,0.346998426145469,-0.069503674737475,-0.0381641168606665,0.236841531660259,0.00381892947043016,-0.0220518145000681,-0.0400954243410669,0,0,0.130926206049445,0.158707305775426,0.0385645110058135,0.221575105212122,0.634374408343885,0.0057082420143262,-0.181645858109452,0.421683541694106,0.052069138054756,-0.0924032876386167,1.12466210433537,0.860917464042761,0,-0.0506988438436387,0.081104385612865,0.328234993030815,0.154848458134281,-0.0460159704386462,-0.0441962525998263,-0.380641346691453,0,0.590921498890836,-0.0259015351377734,0,0.096005016482355,0.127346740388105,0,0,0.120527005309115,0.0424427259395948,0,-0.0117053605907212,0.0182263132463175,0.149419651083819,-0.088810404091621,0.945759087958877,-0.116251662296164,0,-0.0270634083257469,-0.123159539795506,0.012378423373601,0.00126464009842131,-0.0562617707664586,0.0906423045331242,0.125789108169688,0.235509944030952,0.0245873280019437,0.160868713147411,-0.0860140317270152,0.163244296691812,-0.0354895060978591,0.0226575588010397,0.30927094540458,0.0793022508813417,0.191617716615595,0.165673997492177,0.182832611804552,0.0284770667840928,0.0424427259395948,0.209721806409121,-0.079918364217545,0.0915679023766274,-0.198171196545813,0.0424427259395948,0.084687472619523,1.06732874789053,0.444707252809384,0.0261385413583234,-0.441381427726403,0.361627415578021,0.520246247099294,-0.0264973121332237,0,0.302721019436223,2.07574636861824,0,0,0,0.179929059684616,-0.107924357395045,0.0104284136227702,0.474586766600113,0.0436613492958335,0,-0.250513889248372,0.0424427259395948,0.179929059684616,0.167179373260742,-0.193033311824794,0,0.0164847065041311,0.0810983286170615,0.0480820863965123,-0.0735283474953393,0,0,0.652933494476633,0.116603899259381,0.368215548570838,-0.219022764524152,0.0319445675412321,-0.2149595068277,-0.172221955873891,0.0405521928064325,0.795484562020639,0,0.081104385612865,0.677371208956003,0,-0.0376576717710754,0,0,-0.228659933629026,-2.42137307522594e-05,0,0.0405521928064325,0.116603899259381,0,0.0424427259395948,0,0,0,0,0,0.0197295395727666,0.111756139401015,0.0499904869144854,0.284197226337191,-0.34880473105113,0,0.0424427259395948,0,0,0,0,0.0424427259395948,0.62144083120611,-0.316712513346656,-0.0756119348729476,0.026402235407399,0,0,0,0,0.13296177528325,-0.160793836155129,0.0424427259395948,-0.0507583208847668,0.0424427259395948,0.184107774285419,0,0,-0.0436982638496166,0,0,0,0,-0.057730457053664,-0.142241323187917,0,0,0.0212213629697974,-0.27695440160179,0,0,0.081104385612865,0.000317996004084692,0.744089780420728,0,0,-0.452001113701764,0,0.203648702467553,-0.000477493933976489,0,-0.326707051154054,-0.936740166427454,-0.710040573244483,0,0.368215548570838,0.0873380460468375,0,0.00408456267415998,-0.213354293640441,0,0.0424427259395948,0.046977069991425,0,0,0.104217566264374,0,0,0,0.046067560558847,0,0,0,0,0,0.0424427259395948,0,0,0,0,0,-0.0362971855285943,0.116211075870237,0.0525442287422724,0,0,0,0,0,0.0424427259395948,0.0164461697275293,0.0812803522358505,0,0,0,0,0,0.081104385612865,0,0,-0.211043866704639,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.464353722313982,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0422147004225828,0.555790924690822,0,0,0,0,0,0.208435132528748,0,0.147198939324703,0,0,0,0,0.0945507588197707,0,0,0,-0.0236919991762915,0,-0.0437141308270056,0.499125840344178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0212213629697974,0,0,0,-0.258926410698581,0,0.284197226337191,-0.0144162202230044,0,0,-0.090529739464446,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.013636680835291,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.350982760018502,0,0,0,0,0,0,-0.0474631262166781,-0.103291340138531,0.12936026369267,0,0,0.873190167838306,-0.0138333796760226,0,0,0,0,0.320127911874977,0,0,0.0424427259395948,0,0,0,0,0,0,0,0,0.0212213629697974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0722186247355627,0,0,0,0,0,0,0,0,0,0,0.335857618705593,0,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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -14 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -14 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.80666161626941e-217!GO:0005737;cytoplasm;3.07992816759316e-192!GO:0043226;organelle;1.75766259816179e-163!GO:0043229;intracellular organelle;4.90274194258115e-163!GO:0043227;membrane-bound organelle;2.53537214804327e-151!GO:0043231;intracellular membrane-bound organelle;2.53537214804327e-151!GO:0044444;cytoplasmic part;1.67291782590076e-139!GO:0005515;protein binding;9.78037644546268e-101!GO:0044422;organelle part;2.72255043530024e-98!GO:0044446;intracellular organelle part;2.61130144936476e-97!GO:0032991;macromolecular complex;7.42051232198498e-92!GO:0005739;mitochondrion;4.00506666966911e-78!GO:0044238;primary metabolic process;1.06263286634129e-71!GO:0044237;cellular metabolic process;1.56216818849978e-71!GO:0030529;ribonucleoprotein complex;4.661687130954e-69!GO:0043170;macromolecule metabolic process;2.52300358337283e-66!GO:0043233;organelle lumen;1.46839508112381e-63!GO:0031974;membrane-enclosed lumen;1.46839508112381e-63!GO:0003723;RNA binding;9.93421058997059e-58!GO:0005634;nucleus;1.33916733997069e-55!GO:0044429;mitochondrial part;5.5159069286894e-55!GO:0044428;nuclear part;3.09670376518925e-54!GO:0043234;protein complex;2.83552953589101e-49!GO:0019538;protein metabolic process;2.34152231876658e-48!GO:0031967;organelle envelope;5.59436177347752e-45!GO:0031975;envelope;1.02320062733153e-44!GO:0006412;translation;2.15351589887697e-44!GO:0005840;ribosome;2.69654706526664e-44!GO:0044260;cellular macromolecule metabolic process;9.5947387595876e-43!GO:0044267;cellular protein metabolic process;2.16537034936922e-40!GO:0016043;cellular component organization and biogenesis;4.56074038176221e-39!GO:0031090;organelle membrane;7.88487006853861e-39!GO:0003735;structural constituent of ribosome;1.10103108792829e-37!GO:0010467;gene expression;7.46039671233006e-37!GO:0005740;mitochondrial envelope;1.8429342616683e-36!GO:0031966;mitochondrial membrane;1.02631821872294e-35!GO:0043283;biopolymer metabolic process;5.94304630592524e-35!GO:0031981;nuclear lumen;1.41090706906221e-34!GO:0006396;RNA processing;1.51372629404093e-34!GO:0044249;cellular biosynthetic process;5.12622913216483e-34!GO:0033036;macromolecule localization;1.36477587213326e-33!GO:0005829;cytosol;2.03627622290881e-33!GO:0019866;organelle inner membrane;2.41980689337292e-32!GO:0015031;protein transport;5.89744276191727e-32!GO:0033279;ribosomal subunit;6.8726083321901e-32!GO:0005743;mitochondrial inner membrane;2.46382111283196e-31!GO:0009059;macromolecule biosynthetic process;3.58434909107843e-31!GO:0016071;mRNA metabolic process;5.6397134725817e-31!GO:0008380;RNA splicing;7.04810989878891e-31!GO:0008104;protein localization;7.6846262043289e-31!GO:0045184;establishment of protein localization;1.84514931145991e-30!GO:0009058;biosynthetic process;2.82399636865465e-30!GO:0046907;intracellular transport;1.74488309501044e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.17366288913051e-26!GO:0006397;mRNA processing;6.83795357858355e-26!GO:0065003;macromolecular complex assembly;7.22847450559922e-25!GO:0022607;cellular component assembly;1.5464934100078e-24!GO:0006886;intracellular protein transport;2.74636719764965e-24!GO:0043228;non-membrane-bound organelle;5.69403720161194e-24!GO:0043232;intracellular non-membrane-bound organelle;5.69403720161194e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.37481783338042e-23!GO:0006512;ubiquitin cycle;3.60640673548789e-23!GO:0031980;mitochondrial lumen;4.03342815195917e-23!GO:0005759;mitochondrial matrix;4.03342815195917e-23!GO:0044455;mitochondrial membrane part;7.89662603139504e-23!GO:0006119;oxidative phosphorylation;7.99282064174644e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.91202060803039e-21!GO:0005654;nucleoplasm;3.75906295303486e-21!GO:0005746;mitochondrial respiratory chain;1.19217440373563e-20!GO:0008134;transcription factor binding;2.85288100229433e-20!GO:0005681;spliceosome;3.21569590967362e-20!GO:0044451;nucleoplasm part;1.11586827433163e-19!GO:0044445;cytosolic part;7.04068094478242e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;1.02772514719436e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.65570208124157e-18!GO:0019941;modification-dependent protein catabolic process;1.84911276449598e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.84911276449598e-18!GO:0044265;cellular macromolecule catabolic process;1.96508857422056e-18!GO:0008092;cytoskeletal protein binding;2.31438460702807e-18!GO:0044257;cellular protein catabolic process;5.27127635990278e-18!GO:0022618;protein-RNA complex assembly;5.61185005045757e-18!GO:0000166;nucleotide binding;6.16136329495326e-18!GO:0006996;organelle organization and biogenesis;8.95313377211331e-18!GO:0008135;translation factor activity, nucleic acid binding;1.06120789597224e-17!GO:0050136;NADH dehydrogenase (quinone) activity;2.91564125116184e-17!GO:0003954;NADH dehydrogenase activity;2.91564125116184e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.91564125116184e-17!GO:0044248;cellular catabolic process;4.09788871105936e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.71783863037217e-17!GO:0015935;small ribosomal subunit;8.21347570704762e-17!GO:0016874;ligase activity;2.30050485526633e-16!GO:0051641;cellular localization;2.73864291369332e-16!GO:0051649;establishment of cellular localization;2.99037522392555e-16!GO:0015934;large ribosomal subunit;3.4386026702528e-16!GO:0043285;biopolymer catabolic process;6.37697587644885e-16!GO:0016070;RNA metabolic process;1.06200302032841e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.10019662759506e-15!GO:0042773;ATP synthesis coupled electron transport;1.10019662759506e-15!GO:0003676;nucleic acid binding;1.92539622195826e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.49945133239617e-15!GO:0045271;respiratory chain complex I;2.49945133239617e-15!GO:0005747;mitochondrial respiratory chain complex I;2.49945133239617e-15!GO:0043412;biopolymer modification;4.28398577315395e-15!GO:0043687;post-translational protein modification;6.66448299533355e-15!GO:0051186;cofactor metabolic process;7.41770591021764e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.00019678751121e-15!GO:0009057;macromolecule catabolic process;8.15604959473267e-15!GO:0006457;protein folding;8.21939201572475e-15!GO:0005761;mitochondrial ribosome;9.35012623994574e-15!GO:0000313;organellar ribosome;9.35012623994574e-15!GO:0044449;contractile fiber part;1.12957375537398e-14!GO:0015629;actin cytoskeleton;1.15835712397642e-14!GO:0043292;contractile fiber;1.25258489480771e-14!GO:0005730;nucleolus;1.47820312093018e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.95558826150636e-14!GO:0030163;protein catabolic process;2.49046424940487e-14!GO:0006605;protein targeting;2.54843609291638e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.42610437195523e-14!GO:0006464;protein modification process;5.59628803367914e-14!GO:0003712;transcription cofactor activity;5.64038294268499e-14!GO:0048770;pigment granule;8.5815007579131e-14!GO:0042470;melanosome;8.5815007579131e-14!GO:0009055;electron carrier activity;5.33774619231109e-13!GO:0048523;negative regulation of cellular process;9.56010757367205e-13!GO:0030016;myofibril;9.84804229209143e-13!GO:0015980;energy derivation by oxidation of organic compounds;1.49089465243257e-12!GO:0006413;translational initiation;2.05066881230409e-12!GO:0006446;regulation of translational initiation;2.10405593977795e-12!GO:0050789;regulation of biological process;2.83758850627161e-12!GO:0051082;unfolded protein binding;3.10326056839061e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.27496946659679e-12!GO:0007517;muscle development;4.67456620756104e-12!GO:0017111;nucleoside-triphosphatase activity;4.84876714204961e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;5.05030165536732e-12!GO:0003743;translation initiation factor activity;5.05030165536732e-12!GO:0006366;transcription from RNA polymerase II promoter;5.64805819640425e-12!GO:0016462;pyrophosphatase activity;5.83205740761661e-12!GO:0003779;actin binding;1.07663012841896e-11!GO:0006461;protein complex assembly;1.4906967237007e-11!GO:0005783;endoplasmic reticulum;1.52106977156503e-11!GO:0017076;purine nucleotide binding;1.52106977156503e-11!GO:0016604;nuclear body;1.84505450784076e-11!GO:0016192;vesicle-mediated transport;1.85407685792292e-11!GO:0008307;structural constituent of muscle;2.34624613728381e-11!GO:0050794;regulation of cellular process;2.49399822995301e-11!GO:0006732;coenzyme metabolic process;3.06587944609435e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.24189805384098e-11!GO:0030017;sarcomere;3.45189019912628e-11!GO:0048519;negative regulation of biological process;4.19234413319406e-11!GO:0008639;small protein conjugating enzyme activity;5.47411154059022e-11!GO:0012501;programmed cell death;7.19706272317998e-11!GO:0045333;cellular respiration;7.80573950171829e-11!GO:0032553;ribonucleotide binding;8.67056551158772e-11!GO:0032555;purine ribonucleotide binding;8.67056551158772e-11!GO:0006915;apoptosis;9.39135804910101e-11!GO:0008565;protein transporter activity;1.10963953598156e-10!GO:0004842;ubiquitin-protein ligase activity;1.16823047462122e-10!GO:0006091;generation of precursor metabolites and energy;1.16877643238489e-10!GO:0006913;nucleocytoplasmic transport;1.32247603568563e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.41666643473581e-10!GO:0009056;catabolic process;1.66927056934383e-10!GO:0019787;small conjugating protein ligase activity;1.9457949224459e-10!GO:0016564;transcription repressor activity;2.8844125702544e-10!GO:0051169;nuclear transport;3.61032616173449e-10!GO:0005635;nuclear envelope;4.10412111346675e-10!GO:0012505;endomembrane system;5.47053697917166e-10!GO:0009060;aerobic respiration;6.92872656247018e-10!GO:0016607;nuclear speck;7.96284158293778e-10!GO:0048193;Golgi vesicle transport;9.8757900265927e-10!GO:0051246;regulation of protein metabolic process;1.09252943178742e-09!GO:0031965;nuclear membrane;1.40239666239406e-09!GO:0042254;ribosome biogenesis and assembly;1.42334601722577e-09!GO:0008219;cell death;1.49227105923666e-09!GO:0016265;death;1.49227105923666e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.50754144089097e-09!GO:0000375;RNA splicing, via transesterification reactions;1.50754144089097e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.50754144089097e-09!GO:0017038;protein import;2.39586181591972e-09!GO:0005794;Golgi apparatus;2.92206962718059e-09!GO:0015078;hydrogen ion transmembrane transporter activity;6.06772801843331e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.41959275240936e-09!GO:0016881;acid-amino acid ligase activity;1.37457470450241e-08!GO:0065007;biological regulation;1.92411539076134e-08!GO:0030554;adenyl nucleotide binding;2.24964179288288e-08!GO:0006084;acetyl-CoA metabolic process;3.28753538977407e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.73029168421423e-08!GO:0005768;endosome;3.80264763776876e-08!GO:0003012;muscle system process;4.8107564130092e-08!GO:0006936;muscle contraction;4.8107564130092e-08!GO:0006099;tricarboxylic acid cycle;4.8107564130092e-08!GO:0046356;acetyl-CoA catabolic process;4.8107564130092e-08!GO:0016529;sarcoplasmic reticulum;6.03581307344663e-08!GO:0016528;sarcoplasm;6.03581307344663e-08!GO:0003713;transcription coactivator activity;6.15733830466528e-08!GO:0030036;actin cytoskeleton organization and biogenesis;6.95688390394211e-08!GO:0009892;negative regulation of metabolic process;7.53638173297611e-08!GO:0003714;transcription corepressor activity;7.64672514636057e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.7494844203454e-08!GO:0031324;negative regulation of cellular metabolic process;8.93284666466891e-08!GO:0030029;actin filament-based process;9.04177821711514e-08!GO:0032559;adenyl ribonucleotide binding;9.14763534051833e-08!GO:0009109;coenzyme catabolic process;9.93469559267044e-08!GO:0006793;phosphorus metabolic process;9.98477908512836e-08!GO:0006796;phosphate metabolic process;9.98477908512836e-08!GO:0005524;ATP binding;1.05641832024123e-07!GO:0019829;cation-transporting ATPase activity;1.57326433508483e-07!GO:0051187;cofactor catabolic process;1.58673507053557e-07!GO:0006163;purine nucleotide metabolic process;1.98215591900841e-07!GO:0044432;endoplasmic reticulum part;1.99074534867211e-07!GO:0016563;transcription activator activity;2.38505705087898e-07!GO:0006259;DNA metabolic process;3.38597200765182e-07!GO:0044453;nuclear membrane part;3.86308853968261e-07!GO:0051188;cofactor biosynthetic process;4.68785468098808e-07!GO:0051170;nuclear import;4.84148700689096e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.46720420383573e-07!GO:0006606;protein import into nucleus;6.10108147317337e-07!GO:0019899;enzyme binding;6.43950962907773e-07!GO:0005793;ER-Golgi intermediate compartment;8.79288381992426e-07!GO:0000151;ubiquitin ligase complex;8.83835763636596e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.14670674712727e-07!GO:0015986;ATP synthesis coupled proton transport;9.39343315829573e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.39343315829573e-07!GO:0016887;ATPase activity;9.65560605816416e-07!GO:0009150;purine ribonucleotide metabolic process;9.6910652521542e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.08527647156328e-06!GO:0005643;nuclear pore;1.17950795939221e-06!GO:0005741;mitochondrial outer membrane;1.27774371127616e-06!GO:0016481;negative regulation of transcription;1.49182977947438e-06!GO:0046034;ATP metabolic process;1.52766772597509e-06!GO:0014706;striated muscle development;1.7791971365077e-06!GO:0045259;proton-transporting ATP synthase complex;1.78474438825223e-06!GO:0042981;regulation of apoptosis;2.14054734473013e-06!GO:0032446;protein modification by small protein conjugation;2.55390823701875e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69570769627298e-06!GO:0016491;oxidoreductase activity;2.71126869646028e-06!GO:0009259;ribonucleotide metabolic process;2.91212534418529e-06!GO:0016310;phosphorylation;3.13726468939176e-06!GO:0031252;leading edge;3.33984660893008e-06!GO:0065002;intracellular protein transport across a membrane;3.33984660893008e-06!GO:0043067;regulation of programmed cell death;3.35903768135149e-06!GO:0008361;regulation of cell size;3.54745225044001e-06!GO:0006941;striated muscle contraction;3.86431070908853e-06!GO:0043069;negative regulation of programmed cell death;4.01951293770767e-06!GO:0016567;protein ubiquitination;4.06214757875721e-06!GO:0031968;organelle outer membrane;4.17435899399041e-06!GO:0051427;hormone receptor binding;4.72292068603252e-06!GO:0042623;ATPase activity, coupled;4.77432936165224e-06!GO:0006364;rRNA processing;4.7928905414784e-06!GO:0043066;negative regulation of apoptosis;4.83669062581685e-06!GO:0019867;outer membrane;4.90690047971395e-06!GO:0019222;regulation of metabolic process;4.99952546022014e-06!GO:0006164;purine nucleotide biosynthetic process;5.44052760683696e-06!GO:0016049;cell growth;5.99947184233568e-06!GO:0006916;anti-apoptosis;6.97163575477974e-06!GO:0007519;skeletal muscle development;7.09448712766671e-06!GO:0005770;late endosome;8.23650156388997e-06!GO:0050657;nucleic acid transport;8.68741742560817e-06!GO:0051236;establishment of RNA localization;8.68741742560817e-06!GO:0050658;RNA transport;8.68741742560817e-06!GO:0016072;rRNA metabolic process;9.11845738714665e-06!GO:0006403;RNA localization;9.53797875918057e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.79857127409777e-06!GO:0007005;mitochondrion organization and biogenesis;9.84176007332656e-06!GO:0045786;negative regulation of progression through cell cycle;1.03292397816094e-05!GO:0035257;nuclear hormone receptor binding;1.06964498976023e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.09074310671757e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.09074310671757e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.09074310671757e-05!GO:0003924;GTPase activity;1.20054713495751e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.25061625918933e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.25400672445261e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.25400672445261e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.40774138891482e-05!GO:0005523;tropomyosin binding;1.49131203037615e-05!GO:0001558;regulation of cell growth;1.63802747887943e-05!GO:0005667;transcription factor complex;1.69766015170231e-05!GO:0009108;coenzyme biosynthetic process;1.89815110134353e-05!GO:0009141;nucleoside triphosphate metabolic process;1.89815110134353e-05!GO:0006754;ATP biosynthetic process;1.95739869335183e-05!GO:0006753;nucleoside phosphate metabolic process;1.95739869335183e-05!GO:0042802;identical protein binding;1.98590859333874e-05!GO:0005773;vacuole;2.15331351604797e-05!GO:0000245;spliceosome assembly;2.19510221056917e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.39183257390082e-05!GO:0005762;mitochondrial large ribosomal subunit;2.53029591726576e-05!GO:0000315;organellar large ribosomal subunit;2.53029591726576e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.55272087561824e-05!GO:0043038;amino acid activation;2.71528959355632e-05!GO:0006418;tRNA aminoacylation for protein translation;2.71528959355632e-05!GO:0043039;tRNA aminoacylation;2.71528959355632e-05!GO:0031674;I band;2.83349092408629e-05!GO:0006950;response to stress;3.00977615614073e-05!GO:0000314;organellar small ribosomal subunit;3.05923821525461e-05!GO:0005763;mitochondrial small ribosomal subunit;3.05923821525461e-05!GO:0005788;endoplasmic reticulum lumen;3.09767642145258e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.51403256471517e-05!GO:0046930;pore complex;3.83656803190796e-05!GO:0044440;endosomal part;3.83656803190796e-05!GO:0010008;endosome membrane;3.83656803190796e-05!GO:0030120;vesicle coat;3.83656803190796e-05!GO:0030662;coated vesicle membrane;3.83656803190796e-05!GO:0048475;coated membrane;3.88530801125446e-05!GO:0030117;membrane coat;3.88530801125446e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.11650103734439e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.56183578730423e-05!GO:0016044;membrane organization and biogenesis;4.73633117846333e-05!GO:0043566;structure-specific DNA binding;5.33845415702006e-05!GO:0005865;striated muscle thin filament;5.40178603441207e-05!GO:0031988;membrane-bound vesicle;5.7215728284891e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.23967192966678e-05!GO:0005525;GTP binding;6.23967192966678e-05!GO:0009260;ribonucleotide biosynthetic process;6.45516154668199e-05!GO:0003697;single-stranded DNA binding;6.7243880822188e-05!GO:0031982;vesicle;7.26935232401505e-05!GO:0016568;chromatin modification;7.59226749852491e-05!GO:0051128;regulation of cellular component organization and biogenesis;7.8056851347328e-05!GO:0005798;Golgi-associated vesicle;8.77430197832869e-05!GO:0016023;cytoplasmic membrane-bound vesicle;8.84920953887008e-05!GO:0008026;ATP-dependent helicase activity;0.000108152913618572!GO:0048471;perinuclear region of cytoplasm;0.000113707735677589!GO:0004298;threonine endopeptidase activity;0.000116028174849118!GO:0006974;response to DNA damage stimulus;0.000125179128535587!GO:0048522;positive regulation of cellular process;0.00012935882474211!GO:0005977;glycogen metabolic process;0.000134231191683478!GO:0007010;cytoskeleton organization and biogenesis;0.000139057841331861!GO:0045892;negative regulation of transcription, DNA-dependent;0.000147932402702866!GO:0031410;cytoplasmic vesicle;0.000150116482318659!GO:0000323;lytic vacuole;0.000150968209842306!GO:0005764;lysosome;0.000150968209842306!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000155224905507349!GO:0009142;nucleoside triphosphate biosynthetic process;0.000156193210395901!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000156193210395901!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000157652395999079!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000157652395999079!GO:0006399;tRNA metabolic process;0.000158832575791552!GO:0040008;regulation of growth;0.000158832575791552!GO:0003746;translation elongation factor activity;0.000161104205186063!GO:0009117;nucleotide metabolic process;0.000164259057932704!GO:0051789;response to protein stimulus;0.000165009625776954!GO:0006986;response to unfolded protein;0.000165009625776954!GO:0005789;endoplasmic reticulum membrane;0.000184106400035139!GO:0051028;mRNA transport;0.000184900361466727!GO:0008286;insulin receptor signaling pathway;0.000188873372319391!GO:0030133;transport vesicle;0.000199235750575351!GO:0006414;translational elongation;0.000227935141853212!GO:0043284;biopolymer biosynthetic process;0.00025490576676756!GO:0003724;RNA helicase activity;0.000260877871804463!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000323334700867386!GO:0015002;heme-copper terminal oxidase activity;0.000323334700867386!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000323334700867386!GO:0004129;cytochrome-c oxidase activity;0.000323334700867386!GO:0032561;guanyl ribonucleotide binding;0.000348280884975828!GO:0019001;guanyl nucleotide binding;0.000348280884975828!GO:0007243;protein kinase cascade;0.000354855121025053!GO:0043623;cellular protein complex assembly;0.000390128144092091!GO:0044262;cellular carbohydrate metabolic process;0.000410091899852875!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000441828005286973!GO:0006613;cotranslational protein targeting to membrane;0.000463105427345641!GO:0006073;glucan metabolic process;0.000480182701135626!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000481296212420382!GO:0030518;steroid hormone receptor signaling pathway;0.000485567364124842!GO:0051287;NAD binding;0.000498243478682945!GO:0043021;ribonucleoprotein binding;0.000520126971119413!GO:0004386;helicase activity;0.000534607417925393!GO:0009719;response to endogenous stimulus;0.00057498514771154!GO:0007264;small GTPase mediated signal transduction;0.000581496547638749!GO:0035258;steroid hormone receptor binding;0.000609421767131361!GO:0007050;cell cycle arrest;0.000617400375648354!GO:0006402;mRNA catabolic process;0.000620879787801859!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000661450665458203!GO:0007049;cell cycle;0.000694747803380692!GO:0033017;sarcoplasmic reticulum membrane;0.000703572476644776!GO:0031072;heat shock protein binding;0.000704422030180804!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000708579494329334!GO:0006635;fatty acid beta-oxidation;0.000718341014091611!GO:0051087;chaperone binding;0.000730697270849669!GO:0045941;positive regulation of transcription;0.000730697270849669!GO:0005769;early endosome;0.000742313200369322!GO:0050662;coenzyme binding;0.000793634306241889!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00081427130597711!GO:0051540;metal cluster binding;0.00081427130597711!GO:0051536;iron-sulfur cluster binding;0.00081427130597711!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000894641426636692!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000894641426636692!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000894641426636692!GO:0022890;inorganic cation transmembrane transporter activity;0.000898961613881938!GO:0006979;response to oxidative stress;0.000899005910079242!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000899015024624522!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00091349633247954!GO:0000074;regulation of progression through cell cycle;0.000932534419721248!GO:0016197;endosome transport;0.000940804818866838!GO:0051726;regulation of cell cycle;0.0009580570789287!GO:0045893;positive regulation of transcription, DNA-dependent;0.000970766688828136!GO:0044431;Golgi apparatus part;0.00107406998598807!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00107742754077363!GO:0006752;group transfer coenzyme metabolic process;0.00109153276026623!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00113171444782609!GO:0030018;Z disc;0.00124412885354905!GO:0048518;positive regulation of biological process;0.001302745135493!GO:0030521;androgen receptor signaling pathway;0.00132437970875684!GO:0003702;RNA polymerase II transcription factor activity;0.00134680020087778!GO:0006897;endocytosis;0.00135371750419625!GO:0010324;membrane invagination;0.00135371750419625!GO:0031323;regulation of cellular metabolic process;0.0013855096273359!GO:0030880;RNA polymerase complex;0.00141584271442453!GO:0046983;protein dimerization activity;0.0014644042514833!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00147342585008264!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00152314259191654!GO:0001726;ruffle;0.00155308811911753!GO:0007265;Ras protein signal transduction;0.00160906670647876!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00165196851291918!GO:0033673;negative regulation of kinase activity;0.00174304281117758!GO:0006469;negative regulation of protein kinase activity;0.00174304281117758!GO:0015992;proton transport;0.00178527252710568!GO:0005791;rough endoplasmic reticulum;0.00196343666274285!GO:0046314;phosphocreatine biosynthetic process;0.001994986457085!GO:0006603;phosphocreatine metabolic process;0.001994986457085!GO:0008287;protein serine/threonine phosphatase complex;0.00211046326421682!GO:0051252;regulation of RNA metabolic process;0.0021179484987788!GO:0030027;lamellipodium;0.00217341669524655!GO:0006323;DNA packaging;0.00233745426470963!GO:0006818;hydrogen transport;0.00236601071424938!GO:0006118;electron transport;0.00240850185755909!GO:0043488;regulation of mRNA stability;0.00245699441261292!GO:0043487;regulation of RNA stability;0.00245699441261292!GO:0031902;late endosome membrane;0.00251934111407942!GO:0016779;nucleotidyltransferase activity;0.00253404483552995!GO:0045947;negative regulation of translational initiation;0.00261003511567197!GO:0030522;intracellular receptor-mediated signaling pathway;0.00269501082162668!GO:0051920;peroxiredoxin activity;0.00286428863178655!GO:0008186;RNA-dependent ATPase activity;0.0028973285261738!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00297268698288655!GO:0000428;DNA-directed RNA polymerase complex;0.00297268698288655!GO:0005905;coated pit;0.00302132986557214!GO:0016791;phosphoric monoester hydrolase activity;0.00308206987801875!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0032091838802318!GO:0019752;carboxylic acid metabolic process;0.00325137474780089!GO:0003899;DNA-directed RNA polymerase activity;0.00327248831755209!GO:0006112;energy reserve metabolic process;0.00336221520912855!GO:0006082;organic acid metabolic process;0.00339548654791387!GO:0005856;cytoskeleton;0.00353196971620014!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00356385836602735!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00356385836602735!GO:0006417;regulation of translation;0.00361890061982661!GO:0051168;nuclear export;0.00364572546197556!GO:0019843;rRNA binding;0.00365729750946439!GO:0006839;mitochondrial transport;0.00369654576349264!GO:0016853;isomerase activity;0.00374005141564691!GO:0008654;phospholipid biosynthetic process;0.00375042943887494!GO:0015631;tubulin binding;0.00377686454076891!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00384256936907513!GO:0030132;clathrin coat of coated pit;0.00387608077281565!GO:0043681;protein import into mitochondrion;0.00387608077281565!GO:0048487;beta-tubulin binding;0.00394187155168372!GO:0001666;response to hypoxia;0.00415954563576551!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00417659447467933!GO:0006350;transcription;0.00420818380758356!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00437730392452694!GO:0051539;4 iron, 4 sulfur cluster binding;0.00438633597394404!GO:0019783;small conjugating protein-specific protease activity;0.00451695640976027!GO:0051348;negative regulation of transferase activity;0.00470519147610095!GO:0008180;signalosome;0.00477904851258846!GO:0045454;cell redox homeostasis;0.00478248124888551!GO:0004843;ubiquitin-specific protease activity;0.0049479324698889!GO:0031326;regulation of cellular biosynthetic process;0.0052992299095294!GO:0016859;cis-trans isomerase activity;0.00538586271122591!GO:0006401;RNA catabolic process;0.00540221253481481!GO:0048741;skeletal muscle fiber development;0.00564604726387234!GO:0048747;muscle fiber development;0.00564604726387234!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00571777703637764!GO:0007006;mitochondrial membrane organization and biogenesis;0.0057524164659686!GO:0030867;rough endoplasmic reticulum membrane;0.00584063720341494!GO:0010468;regulation of gene expression;0.0058857761431091!GO:0005048;signal sequence binding;0.00605299057077261!GO:0009889;regulation of biosynthetic process;0.00617624709411886!GO:0005790;smooth endoplasmic reticulum;0.00652486491919555!GO:0005869;dynactin complex;0.00687749792492156!GO:0006607;NLS-bearing substrate import into nucleus;0.00688338995012553!GO:0019395;fatty acid oxidation;0.00694010699328012!GO:0006612;protein targeting to membrane;0.00705596832086961!GO:0006006;glucose metabolic process;0.00708607279229692!GO:0004004;ATP-dependent RNA helicase activity;0.00714590968352799!GO:0051289;protein homotetramerization;0.00735637206371867!GO:0004674;protein serine/threonine kinase activity;0.00738832858723857!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00771437490507149!GO:0015399;primary active transmembrane transporter activity;0.00771437490507149!GO:0015036;disulfide oxidoreductase activity;0.00804928534258786!GO:0042805;actinin binding;0.00819281203935214!GO:0045098;type III intermediate filament;0.00833280057585164!GO:0008139;nuclear localization sequence binding;0.00836983180484409!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00848644719923449!GO:0005813;centrosome;0.00859323614543537!GO:0004721;phosphoprotein phosphatase activity;0.00865239390710647!GO:0003729;mRNA binding;0.0089293271083499!GO:0004722;protein serine/threonine phosphatase activity;0.00893796740377412!GO:0004221;ubiquitin thiolesterase activity;0.00916940823136925!GO:0006595;polyamine metabolic process;0.0092290426792952!GO:0065009;regulation of a molecular function;0.0094896797139351!GO:0005859;muscle myosin complex;0.0095780175531418!GO:0031625;ubiquitin protein ligase binding;0.00989574902388443!GO:0008234;cysteine-type peptidase activity;0.0100071856685084!GO:0005862;muscle thin filament tropomyosin;0.0100973174302498!GO:0051098;regulation of binding;0.0101388068584342!GO:0006942;regulation of striated muscle contraction;0.010321058201771!GO:0006281;DNA repair;0.0104565809522894!GO:0048500;signal recognition particle;0.0104565809522894!GO:0005885;Arp2/3 protein complex;0.0105970105848321!GO:0048468;cell development;0.0106478792560041!GO:0030663;COPI coated vesicle membrane;0.0107056062756875!GO:0030126;COPI vesicle coat;0.0107056062756875!GO:0000059;protein import into nucleus, docking;0.0108503893211839!GO:0019902;phosphatase binding;0.0108936621911257!GO:0033018;sarcoplasmic reticulum lumen;0.0113760213369238!GO:0003690;double-stranded DNA binding;0.0113760213369238!GO:0031032;actomyosin structure organization and biogenesis;0.0119720558217921!GO:0030118;clathrin coat;0.0124235287387063!GO:0050681;androgen receptor binding;0.0124235287387063!GO:0016787;hydrolase activity;0.0132338808247333!GO:0005912;adherens junction;0.013415661782888!GO:0005774;vacuolar membrane;0.0138792326917613!GO:0009165;nucleotide biosynthetic process;0.0139878057692608!GO:0009966;regulation of signal transduction;0.0141920661647677!GO:0006891;intra-Golgi vesicle-mediated transport;0.0141920661647677!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0142327760616099!GO:0004177;aminopeptidase activity;0.014313937690087!GO:0006007;glucose catabolic process;0.0144336469305235!GO:0044264;cellular polysaccharide metabolic process;0.0144336469305235!GO:0008017;microtubule binding;0.0145766348982871!GO:0008250;oligosaccharyl transferase complex;0.0148606476361234!GO:0006626;protein targeting to mitochondrion;0.0150848820127766!GO:0008383;manganese superoxide dismutase activity;0.0150852424218004!GO:0001315;age-dependent response to reactive oxygen species;0.0150852424218004!GO:0006354;RNA elongation;0.0152456491668183!GO:0016460;myosin II complex;0.0158104148821736!GO:0048037;cofactor binding;0.0163580292356997!GO:0050811;GABA receptor binding;0.0164796415199089!GO:0044452;nucleolar part;0.0164796415199089!GO:0045792;negative regulation of cell size;0.0165919454773647!GO:0006260;DNA replication;0.0165962408291715!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0167470359362643!GO:0033043;regulation of organelle organization and biogenesis;0.0167470359362643!GO:0001725;stress fiber;0.0167470359362643!GO:0032432;actin filament bundle;0.0167470359362643!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0171853827828553!GO:0016272;prefoldin complex;0.0175399889886577!GO:0035035;histone acetyltransferase binding;0.0175399889886577!GO:0006650;glycerophospholipid metabolic process;0.0175860046515461!GO:0045445;myoblast differentiation;0.0177520120610438!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.01789568620486!GO:0005976;polysaccharide metabolic process;0.0187632575042046!GO:0046474;glycerophospholipid biosynthetic process;0.0188025762726251!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0192248812061637!GO:0016311;dephosphorylation;0.0194660911327993!GO:0030658;transport vesicle membrane;0.0197742831947343!GO:0030308;negative regulation of cell growth;0.0200337764344866!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0200337764344866!GO:0017166;vinculin binding;0.0202308353520809!GO:0031589;cell-substrate adhesion;0.0202308353520809!GO:0051248;negative regulation of protein metabolic process;0.0206164689073057!GO:0030055;cell-matrix junction;0.020681694563424!GO:0022402;cell cycle process;0.0213667136683387!GO:0008154;actin polymerization and/or depolymerization;0.0215143150827016!GO:0030100;regulation of endocytosis;0.0219770006219817!GO:0006352;transcription initiation;0.0219911884754305!GO:0030140;trans-Golgi network transport vesicle;0.0222761546756912!GO:0016790;thiolester hydrolase activity;0.0223505506774867!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0225387966572936!GO:0006383;transcription from RNA polymerase III promoter;0.0230207901753086!GO:0047485;protein N-terminus binding;0.0231050950445119!GO:0007242;intracellular signaling cascade;0.023106256906939!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0231174266682224!GO:0016363;nuclear matrix;0.0238545274447323!GO:0019318;hexose metabolic process;0.0238976354261191!GO:0003711;transcription elongation regulator activity;0.0238976354261191!GO:0005924;cell-substrate adherens junction;0.0241627462691855!GO:0030137;COPI-coated vesicle;0.0242205906589091!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0243314675335746!GO:0010257;NADH dehydrogenase complex assembly;0.0243314675335746!GO:0033108;mitochondrial respiratory chain complex assembly;0.0243314675335746!GO:0043492;ATPase activity, coupled to movement of substances;0.0244570270684136!GO:0006376;mRNA splice site selection;0.0245426592496765!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0245426592496765!GO:0007266;Rho protein signal transduction;0.0247072223603288!GO:0016740;transferase activity;0.0248357161521426!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0248357161521426!GO:0045047;protein targeting to ER;0.0248357161521426!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0248454484828065!GO:0008312;7S RNA binding;0.025441664445656!GO:0019903;protein phosphatase binding;0.027097396116847!GO:0006611;protein export from nucleus;0.0273154718476769!GO:0004576;oligosaccharyl transferase activity;0.0274438429635288!GO:0005815;microtubule organizing center;0.0280983151709831!GO:0019208;phosphatase regulator activity;0.0285217321195646!GO:0009893;positive regulation of metabolic process;0.0293427783382036!GO:0051101;regulation of DNA binding;0.0295274696786297!GO:0005765;lysosomal membrane;0.0298960480331421!GO:0048041;focal adhesion formation;0.0302138195594447!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0304805034375318!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0306563169139454!GO:0051276;chromosome organization and biogenesis;0.0307427701161962!GO:0000139;Golgi membrane;0.0307427701161962!GO:0019904;protein domain specific binding;0.0311910030682012!GO:0051393;alpha-actinin binding;0.0314408815328145!GO:0016405;CoA-ligase activity;0.0317362394021891!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0320338266950495!GO:0006778;porphyrin metabolic process;0.0327637988289266!GO:0033013;tetrapyrrole metabolic process;0.0327637988289266!GO:0005832;chaperonin-containing T-complex;0.0327637988289266!GO:0051260;protein homooligomerization;0.0328619696564014!GO:0005861;troponin complex;0.0329215507949391!GO:0006892;post-Golgi vesicle-mediated transport;0.0333311585735261!GO:0030134;ER to Golgi transport vesicle;0.0335499045670385!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0339652214396534!GO:0017022;myosin binding;0.0340452522236725!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.034535939995165!GO:0000159;protein phosphatase type 2A complex;0.0348748978933499!GO:0008601;protein phosphatase type 2A regulator activity;0.0353884244841686!GO:0009967;positive regulation of signal transduction;0.0353989541790515!GO:0006518;peptide metabolic process;0.0354220316625203!GO:0000209;protein polyubiquitination;0.0358339807501607!GO:0043065;positive regulation of apoptosis;0.0367152209377016!GO:0005684;U2-dependent spliceosome;0.0373941512480533!GO:0006695;cholesterol biosynthetic process;0.0375986218602764!GO:0007034;vacuolar transport;0.0376528786151586!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0377373746475254!GO:0006631;fatty acid metabolic process;0.0379506556637661!GO:0044437;vacuolar part;0.0379506556637661!GO:0031461;cullin-RING ubiquitin ligase complex;0.0380955559318612!GO:0007160;cell-matrix adhesion;0.0380955559318612!GO:0001944;vasculature development;0.0385225419828585!GO:0048659;smooth muscle cell proliferation;0.0385542221908116!GO:0005996;monosaccharide metabolic process;0.0386246921853279!GO:0016251;general RNA polymerase II transcription factor activity;0.0389071921775278!GO:0016126;sterol biosynthetic process;0.0394349011357112!GO:0033116;ER-Golgi intermediate compartment membrane;0.0398393433717705!GO:0043022;ribosome binding;0.040900911937921!GO:0030660;Golgi-associated vesicle membrane;0.0419914521992058!GO:0051262;protein tetramerization;0.0421589262805503!GO:0006351;transcription, DNA-dependent;0.0422332509328929!GO:0032774;RNA biosynthetic process;0.0432051354893269!GO:0030911;TPR domain binding;0.0434708069458469!GO:0000060;protein import into nucleus, translocation;0.043637030769099!GO:0006779;porphyrin biosynthetic process;0.043637030769099!GO:0033014;tetrapyrrole biosynthetic process;0.043637030769099!GO:0004111;creatine kinase activity;0.043637030769099!GO:0014866;skeletal myofibril assembly;0.0446300045872949!GO:0032787;monocarboxylic acid metabolic process;0.0448478324716136!GO:0000096;sulfur amino acid metabolic process;0.0455181619946209!GO:0043068;positive regulation of programmed cell death;0.0468309695834359!GO:0055001;muscle cell development;0.0473149572097984!GO:0030239;myofibril assembly;0.0473149572097984!GO:0055002;striated muscle cell development;0.0473149572097984!GO:0006937;regulation of muscle contraction;0.0474869386111047!GO:0015630;microtubule cytoskeleton;0.0476013361820885!GO:0051370;ZASP binding;0.0476623223599296!GO:0051374;FATZ 1 binding;0.0476623223599296!GO:0008629;induction of apoptosis by intracellular signals;0.0479787478093205!GO:0031901;early endosome membrane;0.0482812789346424!GO:0046467;membrane lipid biosynthetic process;0.0489037437331808!GO:0004300;enoyl-CoA hydratase activity;0.0497208760332068!GO:0032535;regulation of cellular component size;0.0497733750317337 | |||
|sample_id=10023 | |sample_id=10023 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=MEF2{A,B,C,D}:7.94112847148;NR1H4:4.79944954124;FOXL1:3.8639796894;NFE2L1:3.71903709557;NR5A1,2:3.68661967348;AR:3.5408665247;ESRRA:3.50270092203;PDX1:3.46119976025;MYOD1:3.2871534463;NKX2-2,8:3.07178063432;TLX2:2.81596630824;HOX{A4,D4}:2.80642997834;MAFB:2.59615221606;SPZ1:2.58014873508;NFIX:2.48063006716;NHLH1,2:2.47500766093;TGIF1:2.40807532562;NR6A1:2.3551834701;SOX5:2.34132470459;SRF:2.25641150569;RORA:2.24994654335;SMAD1..7,9:2.24283925828;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.17747406279;RXR{A,B,G}:2.08012308852;ESR1:2.02000651855;NKX3-2:1.91514384142;IKZF2:1.87666225722;ATF2:1.84036222831;FOX{D1,D2}:1.79331719837;TFAP4:1.77989921921;POU6F1:1.7230746314;HAND1,2:1.71420106306;STAT5{A,B}:1.69581654742;TFAP2{A,C}:1.66921412162;FOXQ1:1.6198897969;HSF1,2:1.54954267298;PATZ1:1.52892243887;NFATC1..3:1.52630459572;EVI1:1.42977058049;FOXO1,3,4:1.41116901982;CUX2:1.39895568459;TBP:1.38139153605;PAX6:1.37459136533;HES1:1.37305026087;YY1:1.36909851296;NKX6-1,2:1.3674591793;GCM1,2:1.36703636086;GATA4:1.34804799248;POU1F1:1.31864559645;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2668402868;HOX{A6,A7,B6,B7}:1.20726178227;ARID5B:1.1990256978;FOXP3:1.18370179883;GLI1..3:1.16266494615;BPTF:1.16098199012;FOX{F1,F2,J1}:1.14850451471;POU3F1..4:1.10880089968;MTF1:1.09038928986;UFEwm:1.02721790148;TFCP2:1.00924977493;GTF2A1,2:0.992661725573;RREB1:0.989763978833;STAT2,4,6:0.983410558029;TLX1..3_NFIC{dimer}:0.972702705279;FOXM1:0.953672221865;LMO2:0.948526721194;HIC1:0.933309682992;PAX1,9:0.915737126536;ZNF423:0.882579180557;ALX4:0.878687935716;MAZ:0.850713235121;MYBL2:0.756223010045;EN1,2:0.752096333372;TEAD1:0.745389816878;IKZF1:0.709449773568;TFAP2B:0.690756274676;LEF1_TCF7_TCF7L1,2:0.680223012289;TBX4,5:0.674717660743;ZIC1..3:0.65583877547;IRF7:0.654399922835;NR3C1:0.639786897769;MYFfamily:0.62373291495;MED-1{core}:0.614301731934;RFX2..5_RFXANK_RFXAP:0.609044896646;ATF4:0.57650955933;SREBF1,2:0.565816001166;KLF4:0.530140824838;NKX2-1,4:0.521162114957;MTE{core}:0.519990993944;MZF1:0.500609784639;PBX1:0.492579157707;bHLH_family:0.479144623901;TP53:0.478230757145;ZBTB16:0.46809468577;GFI1B:0.449640911061;CDX1,2,4:0.422081366599;REST:0.420605209421;PPARG:0.399161589704;SNAI1..3:0.387069031573;EGR1..3:0.379037423282;ZNF238:0.35590460711;JUN:0.349451544471;DMAP1_NCOR{1,2}_SMARC:0.349302485212;GTF2I:0.344186303116;SP1:0.297569996932;ZNF384:0.292003337706;XBP1:0.284373933871;HMX1:0.2436941172;HNF4A_NR2F1,2:0.23847185036;ALX1:0.234402691845;PAX5:0.226382094609;ZFP161:0.20258500328;FOSL2:0.20058807087;RXRA_VDR{dimer}:0.184530874744;NFE2L2:0.123784563426;HMGA1,2:0.100889366495;ZNF148:0.1002359861;TEF:0.0867792229707;RBPJ:0.0676979977482;EP300:0.0673385880823;FOXA2:0.0669961028744;NANOG{mouse}:0.0562242851893;TAL1_TCF{3,4,12}:0.0483090244245;NFE2:0.0449240229532;PAX2:0.0359761414503;CEBPA,B_DDIT3:0.0315410125232;ZNF143:0.0294035069586;SOX{8,9,10}:0.0261638042258;HLF:0.0085376706691;BREu{core}:-0.0171651001091;PAX3,7:-0.0291010359768;ATF5_CREB3:-0.0348208735992;ZBTB6:-0.0381120171425;LHX3,4:-0.101125298696;ETS1,2:-0.155550906697;SOX17:-0.176995620099;NKX2-3_NKX2-5:-0.184125607147;ATF6:-0.190872537134;FOXN1:-0.192946746868;FOX{I1,J2}:-0.194954234649;NKX3-1:-0.204146809591;ZEB1:-0.215101761785;SPI1:-0.224703866598;CRX:-0.253605201899;IRF1,2:-0.275727666611;HNF1A:-0.294951463604;PRDM1:-0.324282524928;NFKB1_REL_RELA:-0.338895247863;STAT1,3:-0.361242915572;GZF1:-0.396132840642;HOX{A5,B5}:-0.43745760284;NFIL3:-0.448804981764;FOS_FOS{B,L1}_JUN{B,D}:-0.464467262692;SPIB:-0.467806277027;NRF1:-0.511474368602;BACH2:-0.589417966393;T:-0.649643162635;PITX1..3:-0.680436242592;ELF1,2,4:-0.685344922779;EBF1:-0.700607703341;GATA6:-0.706621817034;NANOG:-0.773405349523;HBP1_HMGB_SSRP1_UBTF:-0.785446293272;AHR_ARNT_ARNT2:-0.807705421297;PAX4:-0.812889197401;RUNX1..3:-0.818998441277;CREB1:-0.845375117909;TOPORS:-0.8544630775;NFY{A,B,C}:-0.862222990676;E2F1..5:-0.87025801861;TFDP1:-0.923697806177;HOXA9_MEIS1:-0.948638603929;FOXP1:-0.99315643176;PRRX1,2:-1.06973431544;CDC5L:-1.12493468093;OCT4_SOX2{dimer}:-1.14689585632;ONECUT1,2:-1.15688336308;XCPE1{core}:-1.24799380652;ADNP_IRX_SIX_ZHX:-1.25254288845;MYB:-1.25470719103;RFX1:-1.28115550972;GFI1:-1.315990732;SOX2:-1.32813318954;FOXD3:-1.39414290465;HIF1A:-1.44059983554;ELK1,4_GABP{A,B1}:-1.45562233041;VSX1,2:-1.61198434344;DBP:-1.71340317384;AIRE:-1.82489173902;POU5F1:-2.01468768523;POU2F1..3:-2.13134231287;PAX8:-2.35739812734 | |top_motifs=MEF2{A,B,C,D}:7.94112847148;NR1H4:4.79944954124;FOXL1:3.8639796894;NFE2L1:3.71903709557;NR5A1,2:3.68661967348;AR:3.5408665247;ESRRA:3.50270092203;PDX1:3.46119976025;MYOD1:3.2871534463;NKX2-2,8:3.07178063432;TLX2:2.81596630824;HOX{A4,D4}:2.80642997834;MAFB:2.59615221606;SPZ1:2.58014873508;NFIX:2.48063006716;NHLH1,2:2.47500766093;TGIF1:2.40807532562;NR6A1:2.3551834701;SOX5:2.34132470459;SRF:2.25641150569;RORA:2.24994654335;SMAD1..7,9:2.24283925828;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.17747406279;RXR{A,B,G}:2.08012308852;ESR1:2.02000651855;NKX3-2:1.91514384142;IKZF2:1.87666225722;ATF2:1.84036222831;FOX{D1,D2}:1.79331719837;TFAP4:1.77989921921;POU6F1:1.7230746314;HAND1,2:1.71420106306;STAT5{A,B}:1.69581654742;TFAP2{A,C}:1.66921412162;FOXQ1:1.6198897969;HSF1,2:1.54954267298;PATZ1:1.52892243887;NFATC1..3:1.52630459572;EVI1:1.42977058049;FOXO1,3,4:1.41116901982;CUX2:1.39895568459;TBP:1.38139153605;PAX6:1.37459136533;HES1:1.37305026087;YY1:1.36909851296;NKX6-1,2:1.3674591793;GCM1,2:1.36703636086;GATA4:1.34804799248;POU1F1:1.31864559645;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2668402868;HOX{A6,A7,B6,B7}:1.20726178227;ARID5B:1.1990256978;FOXP3:1.18370179883;GLI1..3:1.16266494615;BPTF:1.16098199012;FOX{F1,F2,J1}:1.14850451471;POU3F1..4:1.10880089968;MTF1:1.09038928986;UFEwm:1.02721790148;TFCP2:1.00924977493;GTF2A1,2:0.992661725573;RREB1:0.989763978833;STAT2,4,6:0.983410558029;TLX1..3_NFIC{dimer}:0.972702705279;FOXM1:0.953672221865;LMO2:0.948526721194;HIC1:0.933309682992;PAX1,9:0.915737126536;ZNF423:0.882579180557;ALX4:0.878687935716;MAZ:0.850713235121;MYBL2:0.756223010045;EN1,2:0.752096333372;TEAD1:0.745389816878;IKZF1:0.709449773568;TFAP2B:0.690756274676;LEF1_TCF7_TCF7L1,2:0.680223012289;TBX4,5:0.674717660743;ZIC1..3:0.65583877547;IRF7:0.654399922835;NR3C1:0.639786897769;MYFfamily:0.62373291495;MED-1{core}:0.614301731934;RFX2..5_RFXANK_RFXAP:0.609044896646;ATF4:0.57650955933;SREBF1,2:0.565816001166;KLF4:0.530140824838;NKX2-1,4:0.521162114957;MTE{core}:0.519990993944;MZF1:0.500609784639;PBX1:0.492579157707;bHLH_family:0.479144623901;TP53:0.478230757145;ZBTB16:0.46809468577;GFI1B:0.449640911061;CDX1,2,4:0.422081366599;REST:0.420605209421;PPARG:0.399161589704;SNAI1..3:0.387069031573;EGR1..3:0.379037423282;ZNF238:0.35590460711;JUN:0.349451544471;DMAP1_NCOR{1,2}_SMARC:0.349302485212;GTF2I:0.344186303116;SP1:0.297569996932;ZNF384:0.292003337706;XBP1:0.284373933871;HMX1:0.2436941172;HNF4A_NR2F1,2:0.23847185036;ALX1:0.234402691845;PAX5:0.226382094609;ZFP161:0.20258500328;FOSL2:0.20058807087;RXRA_VDR{dimer}:0.184530874744;NFE2L2:0.123784563426;HMGA1,2:0.100889366495;ZNF148:0.1002359861;TEF:0.0867792229707;RBPJ:0.0676979977482;EP300:0.0673385880823;FOXA2:0.0669961028744;NANOG{mouse}:0.0562242851893;TAL1_TCF{3,4,12}:0.0483090244245;NFE2:0.0449240229532;PAX2:0.0359761414503;CEBPA,B_DDIT3:0.0315410125232;ZNF143:0.0294035069586;SOX{8,9,10}:0.0261638042258;HLF:0.0085376706691;BREu{core}:-0.0171651001091;PAX3,7:-0.0291010359768;ATF5_CREB3:-0.0348208735992;ZBTB6:-0.0381120171425;LHX3,4:-0.101125298696;ETS1,2:-0.155550906697;SOX17:-0.176995620099;NKX2-3_NKX2-5:-0.184125607147;ATF6:-0.190872537134;FOXN1:-0.192946746868;FOX{I1,J2}:-0.194954234649;NKX3-1:-0.204146809591;ZEB1:-0.215101761785;SPI1:-0.224703866598;CRX:-0.253605201899;IRF1,2:-0.275727666611;HNF1A:-0.294951463604;PRDM1:-0.324282524928;NFKB1_REL_RELA:-0.338895247863;STAT1,3:-0.361242915572;GZF1:-0.396132840642;HOX{A5,B5}:-0.43745760284;NFIL3:-0.448804981764;FOS_FOS{B,L1}_JUN{B,D}:-0.464467262692;SPIB:-0.467806277027;NRF1:-0.511474368602;BACH2:-0.589417966393;T:-0.649643162635;PITX1..3:-0.680436242592;ELF1,2,4:-0.685344922779;EBF1:-0.700607703341;GATA6:-0.706621817034;NANOG:-0.773405349523;HBP1_HMGB_SSRP1_UBTF:-0.785446293272;AHR_ARNT_ARNT2:-0.807705421297;PAX4:-0.812889197401;RUNX1..3:-0.818998441277;CREB1:-0.845375117909;TOPORS:-0.8544630775;NFY{A,B,C}:-0.862222990676;E2F1..5:-0.87025801861;TFDP1:-0.923697806177;HOXA9_MEIS1:-0.948638603929;FOXP1:-0.99315643176;PRRX1,2:-1.06973431544;CDC5L:-1.12493468093;OCT4_SOX2{dimer}:-1.14689585632;ONECUT1,2:-1.15688336308;XCPE1{core}:-1.24799380652;ADNP_IRX_SIX_ZHX:-1.25254288845;MYB:-1.25470719103;RFX1:-1.28115550972;GFI1:-1.315990732;SOX2:-1.32813318954;FOXD3:-1.39414290465;HIF1A:-1.44059983554;ELK1,4_GABP{A,B1}:-1.45562233041;VSX1,2:-1.61198434344;DBP:-1.71340317384;AIRE:-1.82489173902;POU5F1:-2.01468768523;POU2F1..3:-2.13134231287;PAX8:-2.35739812734 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10023-101D5;search_select_hide=table117:FF:10023-101D5 | |||
}} | }} | ||
Latest revision as of 12:14, 3 June 2020
| Name: | skeletal muscle, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10629 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10629
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10629
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.568 |
| 10 | 10 | 0.656 |
| 100 | 100 | 0.427 |
| 101 | 101 | 0.0996 |
| 102 | 102 | 0.678 |
| 103 | 103 | 0.562 |
| 104 | 104 | 0.987 |
| 105 | 105 | 0.478 |
| 106 | 106 | 0.157 |
| 107 | 107 | 0.0661 |
| 108 | 108 | 0.251 |
| 109 | 109 | 0.56 |
| 11 | 11 | 0.735 |
| 110 | 110 | 0.315 |
| 111 | 111 | 0.755 |
| 112 | 112 | 0.191 |
| 113 | 113 | 0.895 |
| 114 | 114 | 0.679 |
| 115 | 115 | 0.524 |
| 116 | 116 | 0.424 |
| 117 | 117 | 0.218 |
| 118 | 118 | 0.0572 |
| 119 | 119 | 0.0778 |
| 12 | 12 | 0.963 |
| 120 | 120 | 0.172 |
| 121 | 121 | 0.962 |
| 122 | 122 | 0.295 |
| 123 | 123 | 0.0641 |
| 124 | 124 | 0.263 |
| 125 | 125 | 0.694 |
| 126 | 126 | 0.607 |
| 127 | 127 | 0.788 |
| 128 | 128 | 0.064 |
| 129 | 129 | 0.902 |
| 13 | 13 | 0.608 |
| 130 | 130 | 0.872 |
| 131 | 131 | 0.154 |
| 132 | 132 | 0.389 |
| 133 | 133 | 0.00154 |
| 134 | 134 | 0.124 |
| 135 | 135 | 0.0561 |
| 136 | 136 | 0.496 |
| 137 | 137 | 0.757 |
| 138 | 138 | 0.918 |
| 139 | 139 | 0.00829 |
| 14 | 14 | 0.205 |
| 140 | 140 | 0.355 |
| 141 | 141 | 0.928 |
| 142 | 142 | 0.785 |
| 143 | 143 | 0.0241 |
| 144 | 144 | 0.585 |
| 145 | 145 | 0.836 |
| 146 | 146 | 0.318 |
| 147 | 147 | 0.00153 |
| 148 | 148 | 0.28 |
| 149 | 149 | 0.0792 |
| 15 | 15 | 0.874 |
| 150 | 150 | 0.644 |
| 151 | 151 | 0.147 |
| 152 | 152 | 0.414 |
| 153 | 153 | 0.125 |
| 154 | 154 | 0.986 |
| 155 | 155 | 0.546 |
| 156 | 156 | 0.219 |
| 157 | 157 | 0.505 |
| 158 | 158 | 0.492 |
| 159 | 159 | 0.586 |
| 16 | 16 | 0.543 |
| 160 | 160 | 0.717 |
| 161 | 161 | 0.2 |
| 162 | 162 | 0.771 |
| 163 | 163 | 0.49 |
| 164 | 164 | 0.113 |
| 165 | 165 | 0.0174 |
| 166 | 166 | 0.427 |
| 167 | 167 | 0.388 |
| 168 | 168 | 0.597 |
| 169 | 169 | 0.128 |
| 17 | 17 | 0.863 |
| 18 | 18 | 0.64 |
| 19 | 19 | 0.0208 |
| 2 | 2 | 0.141 |
| 20 | 20 | 0.0255 |
| 21 | 21 | 0.417 |
| 22 | 22 | 0.0552 |
| 23 | 23 | 0.181 |
| 24 | 24 | 0.242 |
| 25 | 25 | 0.706 |
| 26 | 26 | 0.343 |
| 27 | 27 | 0.648 |
| 28 | 28 | 0.609 |
| 29 | 29 | 0.0975 |
| 3 | 3 | 0.896 |
| 30 | 30 | 0.153 |
| 31 | 31 | 0.494 |
| 32 | 32 | 0.556 |
| 33 | 33 | 0.346 |
| 34 | 34 | 0.328 |
| 35 | 35 | 0.451 |
| 36 | 36 | 0.05 |
| 37 | 37 | 0.472 |
| 38 | 38 | 0.961 |
| 39 | 39 | 0.0405 |
| 4 | 4 | 0.996 |
| 40 | 40 | 0.0387 |
| 41 | 41 | 0.395 |
| 42 | 42 | 0.399 |
| 43 | 43 | 0.687 |
| 44 | 44 | 0.0203 |
| 45 | 45 | 0.13 |
| 46 | 46 | 0.869 |
| 47 | 47 | 0.409 |
| 48 | 48 | 0.442 |
| 49 | 49 | 0.923 |
| 5 | 5 | 0.388 |
| 50 | 50 | 0.502 |
| 51 | 51 | 0.909 |
| 52 | 52 | 0.0701 |
| 53 | 53 | 0.644 |
| 54 | 54 | 0.488 |
| 55 | 55 | 0.195 |
| 56 | 56 | 0.824 |
| 57 | 57 | 0.766 |
| 58 | 58 | 0.58 |
| 59 | 59 | 0.516 |
| 6 | 6 | 0.815 |
| 60 | 60 | 0.0617 |
| 61 | 61 | 0.791 |
| 62 | 62 | 0.223 |
| 63 | 63 | 0.205 |
| 64 | 64 | 0.613 |
| 65 | 65 | 0.344 |
| 66 | 66 | 0.0273 |
| 67 | 67 | 0.549 |
| 68 | 68 | 0.373 |
| 69 | 69 | 0.515 |
| 7 | 7 | 0.229 |
| 70 | 70 | 0.314 |
| 71 | 71 | 0.376 |
| 72 | 72 | 0.356 |
| 73 | 73 | 0.537 |
| 74 | 74 | 0.414 |
| 75 | 75 | 0.399 |
| 76 | 76 | 0.184 |
| 77 | 77 | 0.0783 |
| 78 | 78 | 0.123 |
| 79 | 79 | 0.0231 |
| 8 | 8 | 0.672 |
| 80 | 80 | 0.575 |
| 81 | 81 | 0.485 |
| 82 | 82 | 0.381 |
| 83 | 83 | 0.632 |
| 84 | 84 | 0.302 |
| 85 | 85 | 0.0132 |
| 86 | 86 | 0.375 |
| 87 | 87 | 0.461 |
| 88 | 88 | 0.992 |
| 89 | 89 | 0.128 |
| 9 | 9 | 0.376 |
| 90 | 90 | 0.993 |
| 91 | 91 | 0.311 |
| 92 | 92 | 0.177 |
| 93 | 93 | 0.862 |
| 94 | 94 | 0.518 |
| 95 | 95 | 0.0582 |
| 96 | 96 | 0.406 |
| 97 | 97 | 0.94 |
| 98 | 98 | 0.1 |
| 99 | 99 | 0.438 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10629
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010023 (human skeletal muscle - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
