FF:10492-107B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005744 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008029;DRR008901;DRZ000326;DRZ001711;DRZ011676;DRZ013061 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0001062,UBERON:0000119,UBERON:0000486,UBERON:0010317 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102869 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10492-107B6 | |id=FF:10492-107B6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102869 | ||
|is_obsolete= | |||
|library_id=CNhs11261 | |||
|library_id_phase_based=2:CNhs11261 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10492 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10492 | |||
|name=transitional-cell carcinoma cell line:JMSU1 | |name=transitional-cell carcinoma cell line:JMSU1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11261,LSID758,release008,COMPLETED | |profile_hcage=CNhs11261,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0420117825927527,0,0,0,0,0.236610257262271,0.0840235651855054,-0.154199478751194,-0.282403560576942,0,0,0,0.0440406409639688,0,0,0,0,0,0,0,0,0,-0.032689190893531,0,0.188967642411961,0,0,0,-0.0539172553040887,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0310181459818078,0,0,0,0,0,0,0,0,-0.00219470063084995,0,0,0,0.0840235651855054,0,0,0.0440406409639688,-0.0529517202786364,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0117036873743834,0.0771981969670015,0,0.0682554041447912,0,0,0,0.0118794211482516,0,0,0,0.127275674192616,0.071028132512144,0.0220203204819844,0,0.0420117825927527,0.449380402645077,0.144280279938444,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136399040525157,0.0840235651855054,0,0,-0.0916723192065411,-0.214871512430274,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0440406409639688,0.144280279938444,0,0.449380402645077,0.154396393934003,0,0,0,0,0,0,0,0,0.110894647711593,0.0771981969670015,0.264896265620536,0.0988004886526781,0.0220203204819844,0,-0.0652108464254654,0,0.623437482806855,0,0.0220203204819844,0.564451070416025,0,0.612263772312258,0.538413979963769,0,0.0262765269814378,0,-0.0504125515893149,0.0420117825927527,0.0440406409639688,0.0440406409639688,0,-0.0186252810838506,0.205243549919555,0,0.0810998292594715,0.117378239927073,0,0,0,0,-0.120758762007018,0,0.0940607656753665,0.13222008114569,0,-0.0800237655042006,0.0649213226737146,0,0,0,-0.577612222017731,-0.4175839424111,0,0,-0.121779851751874,-0.0351610877846907,0,0,-0.391044581551635,0,0.0319958103567339,0.0310447800478301,0,0.408806736531938,0,0,0.268067274398755,0,0,0.0840235651855054,0,0,0,0,0,-0.0574934668214365,0.19779706139798,0.00693774797903235,0.154396393934003,0.268067274398755,0,-0.207047025103026,0,0.0729649569080118,0.52638540726671,0.0552273741427491,0.0653638483891091,-0.0805431793447263,0,-0.302389727009913,-0.0324811832282454,-0.338448406813067,0.120408224073344,-0.147401849371139,-0.189981719549847,0,-0.308659782145833,-0.05582781501365,0.13189666906005,0.0853261532741119,-0.0939348184312605,-0.0684150096383853,0.0785649797591768,0,0.120633819454897,0.0431248929755935,-0.254428006419467,0,0.0440406409639688,-0.369480895021877,0.057548968206342,-0.283005131824616,-0.335646206853284,-0.0176419119385153,0.16809734469111,0.347066910974243,-0.271713951892153,-0.0162048498972293,-0.104020873078941,0,0,-0.0165071699519854,-0.0833096553709077,-0.370786751242653,0.0786835404403076,0,-0.168579532942421,-0.0243036201133994,0,-0.164354874503946,-0.241295937884899,0,0,0.160205253501133,0,0,0.14738140569952,0.00251823565445445,0.0440406409639688,0.133732283995207,0.125969682981584,0.263319213140233,0,-0.0475649586666526,0,-0.163252443153209,0,0.0947935901658413,0.113227167257754,0,-0.106911303591795,0,0.073420274792515,-0.0021521553291266,0.0894962828906287,-0.422394805391737,0.127275674192616,-0.0855141688222655,0.0934596918760215,0.150017371879938,-0.0672039319781116,0.0057748022708709,-0.0881268324752877,0.0232174007407904,0.232404747393914,-0.168782350803562,-0.0761449165594859,0.0363765845182265,0,-0.153419379267539,0,0.179104230224563,0.00721055886316855,-0.0781257870405233,-0.107843225692365,0.245751954264255,0.200101763127383,0,0.072256775246791,-0.277415156956011,0,0,0.00198897601356329,0,-0.150367083334639,0.256766092810318,-0.062168520537283,0.0310699907900273,0,-0.0107589573802884,0,0,0.327364840022233,0.122597485232769,0.0440406409639688,0.0575309393950092,0.0357548507400695,0.0808252876496461,-0.0319475082494287,0,0,-0.645700337992725,0,0,-0.0675140838542617,0,-0.304385395090074,-0.209285700522787,0,-0.108622809454255,0,0,0.0647878652109743,0,0.517021450657435,0.00900077520435395,0,0.229552950390649,0,0,0,0,0.0122969873745702,0,0.0250670542001492,0,0,0,0,0.00261110618704811,0.283566552088507,0.126296661694842,0,0.338618251777982,0.0220203204819844,0,0,0,0.0440406409639688,-0.0332801721037348,0,0,0.710188108060306,0.101991734216822,0.235056107320738,0.0603169097274485,0,0.0220203204819844,0.00339250705923088,0.309062255523474,0.0117036873743834,0,0.0225336874363708,0,0.0220203204819844,0,0,0.0682554041447912,0,0,0,0.0603169097274485,-0.0136898160896952,-0.012265376364191,0,0,0,-0.27695440160179,0,0,0.185722501004441,0,0.0383802654921208,0,0.0245833435980349,0,0,-0.279734167445404,0.233816049321718,0,-0.0697822044138275,-0.281111834899586,0.48756688580058,0,0,-0.261347131789888,0,0.0076280672887981,0.287611802541688,0,0,0.199061398007126,0,0,0,0,0.227595769521916,0.0840235651855054,-0.13029094721425,0,0,0.0440406409639688,0,0,0.0840235651855054,0,0,0,0.0220203204819844,0.0440406409639688,-0.571400376770663,-0.0481834156945416,0.292377061551937,0,0,0,0,0.0220203204819844,0,0.122082507697065,0.132053482634393,0,0,0,0,0,0,0,0,0.344803557014906,0,0,0,0.0351165016847845,0,-0.0529517202786364,0,0.0440406409639688,0,0.0840235651855054,-0.564807121153884,0,0,-0.0624218827244069,0,0.0440406409639688,0,0,0,0,0.0220203204819844,0,0,0,0.0226760512395827,0,0,-0.079278445071479,-0.411005533606942,0,0.120633819454897,0,0,0,0.0840235651855054,0,-0.154199478751194,0,0,0,0,0.128431257467173,0,0,0,0.232463315704958,0,0.236610257262271,0,0.0840235651855054,0,0,0,0.0840235651855054,0.241503761933931,0,0.465545268895237,0,0,0,0,0,0,0,0,0,0,0,0,0.185116238169278,0,0,0.0183939605650805,0,0,-0.074929388198762,0.0220203204819844,0,0,0,0,0,0.0615208264736935,0,0,0,0,0,0,0,0,0.0220203204819844,0,0,0,0,0,0,0,0,0,0.0840235651855054,0,0,0,0,0,0,0.00974811509732435,0,0,0,0,0,0,0,-0.0539172553040887,0,0.0220203204819844,0.199699791833131,0,0,0.0440406409639688,0,0.120633819454897,0,-0.0218110012777472,-0.12005080164232,-0.00420660048128129,0,0,0,-0.0103449315184862,0.0840235651855054,0,0,0.0440406409639688,-0.0227367464549326,0.0840235651855054,0,0,0,0,0,0,0,0.0440406409639688,0,0,0,0,0,0,0,0,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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=49.59375 | |rna_weight_ug=49.59375 | ||
|sample_age=75 | |sample_age=75 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2227 | |sample_cell_catalog=RCB2227 | ||
|sample_cell_line=JMSU1 | |sample_cell_line=JMSU1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.92776279415988e-271!GO:0043231;intracellular membrane-bound organelle;3.20201837945186e-225!GO:0043227;membrane-bound organelle;3.82169373651315e-225!GO:0043226;organelle;5.27730634834177e-222!GO:0043229;intracellular organelle;3.06559826999114e-221!GO:0005737;cytoplasm;5.57098717092857e-184!GO:0044422;organelle part;1.16097354609902e-156!GO:0044446;intracellular organelle part;3.40114359415804e-155!GO:0044444;cytoplasmic part;2.38094062148665e-123!GO:0005634;nucleus;6.28176456042147e-110!GO:0032991;macromolecular complex;3.63784936834992e-105!GO:0044238;primary metabolic process;4.26460392898968e-103!GO:0044237;cellular metabolic process;1.01676400642594e-102!GO:0043170;macromolecule metabolic process;8.67538574839587e-97!GO:0044428;nuclear part;4.80811372024495e-94!GO:0030529;ribonucleoprotein complex;1.14582052962856e-89!GO:0003723;RNA binding;1.17248798810093e-87!GO:0043233;organelle lumen;1.46527350579835e-85!GO:0031974;membrane-enclosed lumen;1.46527350579835e-85!GO:0005515;protein binding;3.16298608440967e-79!GO:0005739;mitochondrion;8.51051697347874e-67!GO:0043283;biopolymer metabolic process;1.41093651708707e-62!GO:0006396;RNA processing;1.85069117585453e-60!GO:0016043;cellular component organization and biogenesis;3.37819003799401e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.27597646397032e-55!GO:0031981;nuclear lumen;3.29313321344036e-55!GO:0006412;translation;2.18800316355067e-54!GO:0019538;protein metabolic process;1.18435471421552e-53!GO:0043234;protein complex;9.80081294366972e-53!GO:0010467;gene expression;5.17423331982493e-52!GO:0005840;ribosome;1.46944904958154e-50!GO:0033036;macromolecule localization;8.72921298337827e-48!GO:0015031;protein transport;1.61078070863718e-47!GO:0044260;cellular macromolecule metabolic process;3.58979965590769e-47!GO:0044267;cellular protein metabolic process;6.13631022134437e-47!GO:0031090;organelle membrane;2.13636577359856e-46!GO:0016071;mRNA metabolic process;6.66822317082907e-46!GO:0003735;structural constituent of ribosome;4.73249959642024e-44!GO:0045184;establishment of protein localization;1.08428517894074e-43!GO:0008104;protein localization;1.98302940115182e-43!GO:0044249;cellular biosynthetic process;1.01009960198484e-42!GO:0009058;biosynthetic process;3.13138769867065e-42!GO:0006259;DNA metabolic process;4.59389077111431e-42!GO:0006996;organelle organization and biogenesis;2.43246824819623e-41!GO:0031967;organelle envelope;3.76990493625785e-41!GO:0044429;mitochondrial part;3.92301710710449e-41!GO:0031975;envelope;9.62208469657133e-41!GO:0008380;RNA splicing;1.00583409742776e-40!GO:0006397;mRNA processing;2.74865290179458e-39!GO:0009059;macromolecule biosynthetic process;5.91539616280189e-39!GO:0046907;intracellular transport;1.27834141045837e-38!GO:0043228;non-membrane-bound organelle;5.85655252891181e-38!GO:0043232;intracellular non-membrane-bound organelle;5.85655252891181e-38!GO:0033279;ribosomal subunit;6.4234250518315e-38!GO:0005829;cytosol;1.01251706034306e-37!GO:0065003;macromolecular complex assembly;1.20966392610356e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.88959975436738e-35!GO:0022607;cellular component assembly;1.88486118656487e-34!GO:0007049;cell cycle;1.88486118656487e-34!GO:0003676;nucleic acid binding;2.27084756994281e-34!GO:0000166;nucleotide binding;2.23726360529925e-33!GO:0005654;nucleoplasm;2.30416421456803e-33!GO:0006886;intracellular protein transport;1.79445348298464e-32!GO:0005681;spliceosome;8.57227397567722e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.20766880792454e-27!GO:0051649;establishment of cellular localization;1.43351219175452e-26!GO:0051641;cellular localization;1.83898848430682e-26!GO:0044451;nucleoplasm part;2.12707852117039e-26!GO:0022402;cell cycle process;6.72229426096061e-26!GO:0006974;response to DNA damage stimulus;3.46603396351088e-25!GO:0005740;mitochondrial envelope;1.34570467856565e-24!GO:0016070;RNA metabolic process;1.75113102366998e-24!GO:0016462;pyrophosphatase activity;1.6151040709842e-23!GO:0019866;organelle inner membrane;1.82103389358237e-23!GO:0005694;chromosome;1.91816780213022e-23!GO:0005730;nucleolus;2.07156588231031e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.07156588231031e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.25338633932367e-23!GO:0032553;ribonucleotide binding;4.99144834328687e-23!GO:0032555;purine ribonucleotide binding;4.99144834328687e-23!GO:0017111;nucleoside-triphosphatase activity;5.16124082396875e-23!GO:0031966;mitochondrial membrane;6.57832908208537e-23!GO:0017076;purine nucleotide binding;8.39641065659481e-23!GO:0000278;mitotic cell cycle;1.14397671311709e-22!GO:0016874;ligase activity;1.16355973179706e-22!GO:0006512;ubiquitin cycle;1.70954633501974e-22!GO:0008134;transcription factor binding;6.49092426114158e-22!GO:0006281;DNA repair;6.86194154251071e-22!GO:0044445;cytosolic part;1.99394008173149e-21!GO:0005743;mitochondrial inner membrane;2.60635787920331e-21!GO:0044265;cellular macromolecule catabolic process;4.13251394161011e-21!GO:0051603;proteolysis involved in cellular protein catabolic process;1.40389239224665e-20!GO:0019941;modification-dependent protein catabolic process;2.01844296931104e-20!GO:0043632;modification-dependent macromolecule catabolic process;2.01844296931104e-20!GO:0006457;protein folding;2.02599808260281e-20!GO:0005524;ATP binding;2.30922637212425e-20!GO:0044427;chromosomal part;2.46801940781578e-20!GO:0012505;endomembrane system;2.49169989652334e-20!GO:0015935;small ribosomal subunit;3.94461039687865e-20!GO:0006511;ubiquitin-dependent protein catabolic process;4.03581171869161e-20!GO:0044257;cellular protein catabolic process;6.50575158168404e-20!GO:0032559;adenyl ribonucleotide binding;8.77606588937797e-20!GO:0031980;mitochondrial lumen;1.11596191972383e-19!GO:0005759;mitochondrial matrix;1.11596191972383e-19!GO:0022618;protein-RNA complex assembly;2.31214467484155e-19!GO:0030554;adenyl nucleotide binding;2.31546959473515e-19!GO:0043285;biopolymer catabolic process;5.39199061539338e-19!GO:0051276;chromosome organization and biogenesis;7.08830851476437e-19!GO:0015934;large ribosomal subunit;8.04818894991985e-19!GO:0022403;cell cycle phase;8.40828338392739e-19!GO:0009719;response to endogenous stimulus;1.32954480222598e-18!GO:0006119;oxidative phosphorylation;2.96722338464063e-18!GO:0000087;M phase of mitotic cell cycle;4.87527802528774e-18!GO:0051301;cell division;1.05168044876244e-17!GO:0007067;mitosis;1.09295062903482e-17!GO:0005635;nuclear envelope;1.1181245612396e-17!GO:0009057;macromolecule catabolic process;1.72928781600842e-17!GO:0006260;DNA replication;2.00518255044224e-17!GO:0043412;biopolymer modification;3.89434041745559e-17!GO:0005783;endoplasmic reticulum;3.99231945555821e-17!GO:0008135;translation factor activity, nucleic acid binding;4.46355857359559e-17!GO:0044248;cellular catabolic process;6.06393990280292e-17!GO:0042254;ribosome biogenesis and assembly;8.05549076718146e-17!GO:0044455;mitochondrial membrane part;1.18516820350382e-16!GO:0048770;pigment granule;2.26204677370846e-16!GO:0042470;melanosome;2.26204677370846e-16!GO:0030163;protein catabolic process;2.29708806884308e-16!GO:0031965;nuclear membrane;4.07548222988192e-16!GO:0006605;protein targeting;4.70867557316482e-16!GO:0000279;M phase;4.82537419398133e-16!GO:0044432;endoplasmic reticulum part;2.55059656214063e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.91425592905169e-15!GO:0044453;nuclear membrane part;8.59358074265447e-15!GO:0006464;protein modification process;1.10924803690468e-14!GO:0005761;mitochondrial ribosome;2.26506726146061e-14!GO:0000313;organellar ribosome;2.26506726146061e-14!GO:0051082;unfolded protein binding;2.29060039709924e-14!GO:0004386;helicase activity;2.49222121073042e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.59373391998462e-14!GO:0000375;RNA splicing, via transesterification reactions;2.59373391998462e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.59373391998462e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.96302914256109e-14!GO:0003712;transcription cofactor activity;4.56971745619392e-14!GO:0016604;nuclear body;4.8279274877661e-14!GO:0016887;ATPase activity;8.14399356688228e-14!GO:0006399;tRNA metabolic process;1.05898073216139e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.18736712708507e-13!GO:0048193;Golgi vesicle transport;1.59089197169433e-13!GO:0005746;mitochondrial respiratory chain;1.65934369322971e-13!GO:0043687;post-translational protein modification;2.14293404760519e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.98755459442955e-13!GO:0012501;programmed cell death;3.0627045248737e-13!GO:0006366;transcription from RNA polymerase II promoter;3.62726906617114e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.74892125162089e-13!GO:0051186;cofactor metabolic process;4.22522043547458e-13!GO:0006915;apoptosis;4.31528605529554e-13!GO:0006323;DNA packaging;4.39137475510899e-13!GO:0006913;nucleocytoplasmic transport;4.86192634233115e-13!GO:0005643;nuclear pore;5.40922765285582e-13!GO:0003743;translation initiation factor activity;5.42842960084468e-13!GO:0051726;regulation of cell cycle;5.63619357624889e-13!GO:0000074;regulation of progression through cell cycle;7.29860249528016e-13!GO:0042623;ATPase activity, coupled;9.5435288463041e-13!GO:0051169;nuclear transport;1.62111969935063e-12!GO:0016192;vesicle-mediated transport;2.54224219452513e-12!GO:0006403;RNA localization;3.4270435719877e-12!GO:0006413;translational initiation;3.50067477974483e-12!GO:0050657;nucleic acid transport;3.61853549753103e-12!GO:0051236;establishment of RNA localization;3.61853549753103e-12!GO:0050658;RNA transport;3.61853549753103e-12!GO:0008219;cell death;4.91090425408823e-12!GO:0016265;death;4.91090425408823e-12!GO:0050136;NADH dehydrogenase (quinone) activity;5.02079424837228e-12!GO:0003954;NADH dehydrogenase activity;5.02079424837228e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.02079424837228e-12!GO:0006446;regulation of translational initiation;5.28533896245051e-12!GO:0006461;protein complex assembly;5.54374129158705e-12!GO:0065002;intracellular protein transport across a membrane;1.75559548821612e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.37914432208251e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.41770666191783e-11!GO:0016607;nuclear speck;2.78457807260376e-11!GO:0005789;endoplasmic reticulum membrane;5.79086838746849e-11!GO:0006364;rRNA processing;5.95977876965268e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.24482346133567e-11!GO:0008026;ATP-dependent helicase activity;9.20758700510524e-11!GO:0046930;pore complex;1.17645478343454e-10!GO:0016072;rRNA metabolic process;1.17645478343454e-10!GO:0008639;small protein conjugating enzyme activity;1.28630717767142e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.29419962806921e-10!GO:0042773;ATP synthesis coupled electron transport;1.29419962806921e-10!GO:0006732;coenzyme metabolic process;1.49752920986056e-10!GO:0050794;regulation of cellular process;1.54186097629895e-10!GO:0051028;mRNA transport;2.0571948403838e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.38289927130836e-10!GO:0004842;ubiquitin-protein ligase activity;3.11757991872485e-10!GO:0005794;Golgi apparatus;3.96603239183655e-10!GO:0043566;structure-specific DNA binding;4.08197240295513e-10!GO:0030964;NADH dehydrogenase complex (quinone);4.10486575036079e-10!GO:0045271;respiratory chain complex I;4.10486575036079e-10!GO:0005747;mitochondrial respiratory chain complex I;4.10486575036079e-10!GO:0065004;protein-DNA complex assembly;4.92832476651566e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.05913663978651e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.05913663978651e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.05913663978651e-10!GO:0000775;chromosome, pericentric region;5.9644015726076e-10!GO:0043038;amino acid activation;9.03020881635685e-10!GO:0006418;tRNA aminoacylation for protein translation;9.03020881635685e-10!GO:0043039;tRNA aminoacylation;9.03020881635685e-10!GO:0009056;catabolic process;9.21389110422058e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.27116635495832e-10!GO:0017038;protein import;1.72999450051351e-09!GO:0019787;small conjugating protein ligase activity;2.02534034014859e-09!GO:0015630;microtubule cytoskeleton;2.61577337667486e-09!GO:0000785;chromatin;2.67941079117541e-09!GO:0048523;negative regulation of cellular process;3.08231728229277e-09!GO:0003697;single-stranded DNA binding;3.08572535544818e-09!GO:0016881;acid-amino acid ligase activity;4.10843957599814e-09!GO:0006333;chromatin assembly or disassembly;4.56190838976711e-09!GO:0042981;regulation of apoptosis;5.23055188805151e-09!GO:0016568;chromatin modification;5.89066182259704e-09!GO:0009055;electron carrier activity;6.79840329697361e-09!GO:0006261;DNA-dependent DNA replication;6.81569065464449e-09!GO:0043067;regulation of programmed cell death;6.9024134143923e-09!GO:0008565;protein transporter activity;8.37947821325135e-09!GO:0009259;ribonucleotide metabolic process;1.03187361930955e-08!GO:0005768;endosome;1.05194033984286e-08!GO:0006163;purine nucleotide metabolic process;1.25372461379226e-08!GO:0016779;nucleotidyltransferase activity;1.27687954727124e-08!GO:0051246;regulation of protein metabolic process;1.28391453557589e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.57804615523547e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.79193177361664e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.2332971839689e-08!GO:0005793;ER-Golgi intermediate compartment;2.71515808623995e-08!GO:0007005;mitochondrion organization and biogenesis;2.71807576086576e-08!GO:0006164;purine nucleotide biosynthetic process;3.06207018540115e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.06334926001961e-08!GO:0009060;aerobic respiration;4.702886132341e-08!GO:0016740;transferase activity;5.50182201185224e-08!GO:0009260;ribonucleotide biosynthetic process;7.06217359344719e-08!GO:0045333;cellular respiration;7.60267193544796e-08!GO:0048519;negative regulation of biological process;9.23142655202313e-08!GO:0005667;transcription factor complex;1.00682135812432e-07!GO:0043069;negative regulation of programmed cell death;1.29453191247647e-07!GO:0009150;purine ribonucleotide metabolic process;1.30830222641758e-07!GO:0016563;transcription activator activity;1.39992639699579e-07!GO:0051188;cofactor biosynthetic process;1.43982152538105e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.59836670365974e-07!GO:0043066;negative regulation of apoptosis;1.81162642224544e-07!GO:0000075;cell cycle checkpoint;2.03199559434542e-07!GO:0003713;transcription coactivator activity;2.20605499251713e-07!GO:0051170;nuclear import;3.13027546893584e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.2824265740007e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.58552454610002e-07!GO:0043623;cellular protein complex assembly;3.72563558015425e-07!GO:0032446;protein modification by small protein conjugation;4.67874255341948e-07!GO:0005657;replication fork;4.88104787436521e-07!GO:0015986;ATP synthesis coupled proton transport;4.89179528838416e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.89179528838416e-07!GO:0050789;regulation of biological process;4.90592802638406e-07!GO:0016787;hydrolase activity;5.03381819722112e-07!GO:0019222;regulation of metabolic process;5.73388392480368e-07!GO:0019829;cation-transporting ATPase activity;5.95355268436992e-07!GO:0005819;spindle;5.96709477310735e-07!GO:0016567;protein ubiquitination;6.49631054599853e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.45176948253127e-07!GO:0006793;phosphorus metabolic process;8.55667475033075e-07!GO:0006796;phosphate metabolic process;8.55667475033075e-07!GO:0009117;nucleotide metabolic process;8.67530689665044e-07!GO:0006606;protein import into nucleus;8.69492826262921e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.75181798395285e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.21306022273287e-07!GO:0000245;spliceosome assembly;9.69951403070292e-07!GO:0003924;GTPase activity;9.92690737826861e-07!GO:0009141;nucleoside triphosphate metabolic process;1.02915445277067e-06!GO:0007051;spindle organization and biogenesis;1.11456762246585e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.18846379210582e-06!GO:0051427;hormone receptor binding;1.25164267824607e-06!GO:0005813;centrosome;1.30778398530306e-06!GO:0006916;anti-apoptosis;1.30778398530306e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.37035709032269e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37035709032269e-06!GO:0048475;coated membrane;1.39989232497773e-06!GO:0030117;membrane coat;1.39989232497773e-06!GO:0051329;interphase of mitotic cell cycle;1.41218138756179e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.58751352894125e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.58751352894125e-06!GO:0051325;interphase;1.71739206285407e-06!GO:0005815;microtubule organizing center;2.31898580703724e-06!GO:0030120;vesicle coat;2.33336451715591e-06!GO:0030662;coated vesicle membrane;2.33336451715591e-06!GO:0005788;endoplasmic reticulum lumen;2.40526463787859e-06!GO:0031324;negative regulation of cellular metabolic process;2.58583127252825e-06!GO:0006099;tricarboxylic acid cycle;2.58583127252825e-06!GO:0046356;acetyl-CoA catabolic process;2.58583127252825e-06!GO:0035257;nuclear hormone receptor binding;2.8694827108164e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.07540527660742e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.07540527660742e-06!GO:0008094;DNA-dependent ATPase activity;3.10002044663772e-06!GO:0044440;endosomal part;3.24101372084386e-06!GO:0010008;endosome membrane;3.24101372084386e-06!GO:0003714;transcription corepressor activity;3.49861523218797e-06!GO:0016853;isomerase activity;3.5181245374957e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.57787507244003e-06!GO:0004298;threonine endopeptidase activity;3.58872198378695e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.64555916579069e-06!GO:0009108;coenzyme biosynthetic process;3.67667637786096e-06!GO:0031497;chromatin assembly;3.70795342986704e-06!GO:0046034;ATP metabolic process;3.74452467028471e-06!GO:0019899;enzyme binding;3.86433000226598e-06!GO:0006334;nucleosome assembly;3.89660473660054e-06!GO:0003690;double-stranded DNA binding;4.4615397463952e-06!GO:0045786;negative regulation of progression through cell cycle;4.53629367758185e-06!GO:0006754;ATP biosynthetic process;5.81548331637727e-06!GO:0006753;nucleoside phosphate metabolic process;5.81548331637727e-06!GO:0009109;coenzyme catabolic process;6.14755920760807e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.54502519226459e-06!GO:0006613;cotranslational protein targeting to membrane;6.58665448759471e-06!GO:0003899;DNA-directed RNA polymerase activity;8.1579767501329e-06!GO:0006084;acetyl-CoA metabolic process;8.82132936748113e-06!GO:0005770;late endosome;9.66615031538589e-06!GO:0016310;phosphorylation;9.66615031538589e-06!GO:0000151;ubiquitin ligase complex;1.04315899884537e-05!GO:0045259;proton-transporting ATP synthase complex;1.2489663627569e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.35120203042254e-05!GO:0005525;GTP binding;1.44522019488006e-05!GO:0000776;kinetochore;1.65859181430262e-05!GO:0008033;tRNA processing;1.70130106906851e-05!GO:0003724;RNA helicase activity;1.81479765651428e-05!GO:0005773;vacuole;2.09514954843292e-05!GO:0016564;transcription repressor activity;2.10689614232113e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.14344621519402e-05!GO:0006752;group transfer coenzyme metabolic process;2.2226638684777e-05!GO:0031988;membrane-bound vesicle;2.32236898145259e-05!GO:0009892;negative regulation of metabolic process;2.6931529357646e-05!GO:0051789;response to protein stimulus;2.78342010363614e-05!GO:0006986;response to unfolded protein;2.78342010363614e-05!GO:0051187;cofactor catabolic process;2.93610335681899e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.12355646390749e-05!GO:0005769;early endosome;3.37692045980319e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.44137314191448e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.56353602010041e-05!GO:0044452;nucleolar part;3.66284825883328e-05!GO:0005762;mitochondrial large ribosomal subunit;3.83914318413772e-05!GO:0000315;organellar large ribosomal subunit;3.83914318413772e-05!GO:0007010;cytoskeleton organization and biogenesis;3.83914318413772e-05!GO:0042802;identical protein binding;3.98488585899768e-05!GO:0005798;Golgi-associated vesicle;4.38536717822363e-05!GO:0000314;organellar small ribosomal subunit;4.63216512331168e-05!GO:0005763;mitochondrial small ribosomal subunit;4.63216512331168e-05!GO:0006302;double-strand break repair;4.79653982467968e-05!GO:0007059;chromosome segregation;5.27633381690368e-05!GO:0016363;nuclear matrix;6.59373776337728e-05!GO:0031323;regulation of cellular metabolic process;7.12359049815565e-05!GO:0051052;regulation of DNA metabolic process;7.18621728297923e-05!GO:0005048;signal sequence binding;7.49925622488004e-05!GO:0051168;nuclear export;7.89933085672589e-05!GO:0000323;lytic vacuole;7.98640619151122e-05!GO:0005764;lysosome;7.98640619151122e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.0404116010558e-05!GO:0006414;translational elongation;8.24157931885415e-05!GO:0003729;mRNA binding;8.24157931885415e-05!GO:0031982;vesicle;8.52332690454758e-05!GO:0003678;DNA helicase activity;9.62641184807245e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000101711231907563!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000102702061289796!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000104721629337466!GO:0030867;rough endoplasmic reticulum membrane;0.000113867989379882!GO:0005791;rough endoplasmic reticulum;0.000114291570607841!GO:0016741;transferase activity, transferring one-carbon groups;0.000114291570607841!GO:0006352;transcription initiation;0.000115327064389814!GO:0000049;tRNA binding;0.000135021450549148!GO:0032561;guanyl ribonucleotide binding;0.000140308595869916!GO:0019001;guanyl nucleotide binding;0.000140308595869916!GO:0007093;mitotic cell cycle checkpoint;0.000144996718828188!GO:0016859;cis-trans isomerase activity;0.000152394134836213!GO:0008168;methyltransferase activity;0.000155102935829946!GO:0009112;nucleobase metabolic process;0.000157082651237953!GO:0031410;cytoplasmic vesicle;0.00015756411332046!GO:0003682;chromatin binding;0.000166530526183492!GO:0006612;protein targeting to membrane;0.000171800490490638!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000181766049298372!GO:0032508;DNA duplex unwinding;0.000195138683143069!GO:0032392;DNA geometric change;0.000195138683143069!GO:0016491;oxidoreductase activity;0.000200736332608108!GO:0008654;phospholipid biosynthetic process;0.00020215758533005!GO:0006402;mRNA catabolic process;0.000203241835871724!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000207236236321173!GO:0015980;energy derivation by oxidation of organic compounds;0.000213191207316202!GO:0003684;damaged DNA binding;0.000231186531690561!GO:0048522;positive regulation of cellular process;0.000262188034174591!GO:0043021;ribonucleoprotein binding;0.000267814350832509!GO:0006310;DNA recombination;0.000291141631362351!GO:0045454;cell redox homeostasis;0.000293436197960642!GO:0000059;protein import into nucleus, docking;0.000314319755047829!GO:0007088;regulation of mitosis;0.000325204184093629!GO:0008250;oligosaccharyl transferase complex;0.000354470706391451!GO:0006839;mitochondrial transport;0.000357747576340909!GO:0004674;protein serine/threonine kinase activity;0.000390410633074155!GO:0008186;RNA-dependent ATPase activity;0.000390428853284679!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000413032540006128!GO:0044431;Golgi apparatus part;0.00042577432623582!GO:0031072;heat shock protein binding;0.000430314425395821!GO:0051252;regulation of RNA metabolic process;0.000436059757690541!GO:0006401;RNA catabolic process;0.000436812181927246!GO:0004576;oligosaccharyl transferase activity;0.000456477865339985!GO:0009116;nucleoside metabolic process;0.000564184037244082!GO:0008361;regulation of cell size;0.000568938928101449!GO:0006350;transcription;0.000587677760593954!GO:0030880;RNA polymerase complex;0.000635246035019754!GO:0051059;NF-kappaB binding;0.000651960838147107!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000654842409684928!GO:0050662;coenzyme binding;0.000735150569110394!GO:0006950;response to stress;0.000772303225526097!GO:0007052;mitotic spindle organization and biogenesis;0.000813980220412683!GO:0007017;microtubule-based process;0.000837271536700988!GO:0046483;heterocycle metabolic process;0.000838533931486152!GO:0031968;organelle outer membrane;0.000847437610870902!GO:0016049;cell growth;0.000867100790436228!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000993550934080294!GO:0006268;DNA unwinding during replication;0.00100654817576518!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100714497306344!GO:0006626;protein targeting to mitochondrion;0.00101326866235849!GO:0051540;metal cluster binding;0.00101536664555609!GO:0051536;iron-sulfur cluster binding;0.00101536664555609!GO:0006417;regulation of translation;0.00104680086874694!GO:0043681;protein import into mitochondrion;0.00113184440633435!GO:0019783;small conjugating protein-specific protease activity;0.00113909997413277!GO:0000082;G1/S transition of mitotic cell cycle;0.00114707402908758!GO:0008234;cysteine-type peptidase activity;0.00115433848007309!GO:0004004;ATP-dependent RNA helicase activity;0.00115879161630719!GO:0045045;secretory pathway;0.00119526796457112!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00120888779604381!GO:0000428;DNA-directed RNA polymerase complex;0.00120888779604381!GO:0048471;perinuclear region of cytoplasm;0.00124346494592146!GO:0005874;microtubule;0.00124346494592146!GO:0019867;outer membrane;0.00125664565448193!GO:0008022;protein C-terminus binding;0.00127800938163892!GO:0007050;cell cycle arrest;0.00129118672059079!GO:0016481;negative regulation of transcription;0.001348873518985!GO:0004527;exonuclease activity;0.0013519736665906!GO:0009165;nucleotide biosynthetic process;0.00138899487581513!GO:0005885;Arp2/3 protein complex;0.00141566910242425!GO:0003702;RNA polymerase II transcription factor activity;0.00143296773163153!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00145366995689744!GO:0004843;ubiquitin-specific protease activity;0.00145726568888198!GO:0003746;translation elongation factor activity;0.00151653368095593!GO:0035258;steroid hormone receptor binding;0.00156640000796725!GO:0065009;regulation of a molecular function;0.00162782738964061!GO:0046983;protein dimerization activity;0.00165402069682376!GO:0065007;biological regulation;0.00173159056609629!GO:0051920;peroxiredoxin activity;0.00173570207849289!GO:0004221;ubiquitin thiolesterase activity;0.00174654698786917!GO:0006520;amino acid metabolic process;0.00180307218305031!GO:0006383;transcription from RNA polymerase III promoter;0.00182032619687939!GO:0005741;mitochondrial outer membrane;0.00184710775216671!GO:0016251;general RNA polymerase II transcription factor activity;0.00186079968650404!GO:0030176;integral to endoplasmic reticulum membrane;0.00192373856638697!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00197143993291244!GO:0007243;protein kinase cascade;0.0019782630137764!GO:0008139;nuclear localization sequence binding;0.00204810217260012!GO:0006091;generation of precursor metabolites and energy;0.00205836433680461!GO:0000228;nuclear chromosome;0.00208426723531667!GO:0043284;biopolymer biosynthetic process;0.00213075129864846!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00218674990462632!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00218674990462632!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00218674990462632!GO:0033116;ER-Golgi intermediate compartment membrane;0.00222306098215485!GO:0006891;intra-Golgi vesicle-mediated transport;0.00225065192969663!GO:0010468;regulation of gene expression;0.00232183523304318!GO:0000096;sulfur amino acid metabolic process;0.00233976365275343!GO:0006284;base-excision repair;0.00235222895630178!GO:0001558;regulation of cell growth;0.00247585392170547!GO:0043488;regulation of mRNA stability;0.00252778503433454!GO:0043487;regulation of RNA stability;0.00252778503433454!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00252778503433454!GO:0018196;peptidyl-asparagine modification;0.00256320430552867!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00256320430552867!GO:0051287;NAD binding;0.00260831342915876!GO:0043596;nuclear replication fork;0.00260831342915876!GO:0048037;cofactor binding;0.00266399640574107!GO:0048500;signal recognition particle;0.00267571967969243!GO:0019752;carboxylic acid metabolic process;0.00276335854367921!GO:0008312;7S RNA binding;0.00294443902920707!GO:0030134;ER to Golgi transport vesicle;0.00294443902920707!GO:0016126;sterol biosynthetic process;0.00306463811971649!GO:0051539;4 iron, 4 sulfur cluster binding;0.0032018090436853!GO:0007006;mitochondrial membrane organization and biogenesis;0.00326595771123744!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00341713252835637!GO:0016197;endosome transport;0.00342295828581848!GO:0006082;organic acid metabolic process;0.00342823573784113!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00360682618160293!GO:0006984;ER-nuclear signaling pathway;0.00364134033318569!GO:0051087;chaperone binding;0.00365264441514028!GO:0006275;regulation of DNA replication;0.0038206933669509!GO:0006289;nucleotide-excision repair;0.0038206933669509!GO:0016790;thiolester hydrolase activity;0.00383752382361845!GO:0005684;U2-dependent spliceosome;0.00394010643222507!GO:0045941;positive regulation of transcription;0.00394616718217861!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00400687093376846!GO:0030036;actin cytoskeleton organization and biogenesis;0.00406499868217461!GO:0046966;thyroid hormone receptor binding;0.00413327357163346!GO:0030521;androgen receptor signaling pathway;0.00424242449666606!GO:0031326;regulation of cellular biosynthetic process;0.00428830186448359!GO:0009889;regulation of biosynthetic process;0.00429365494325167!GO:0004518;nuclease activity;0.00429428392256106!GO:0000139;Golgi membrane;0.00456074451371298!GO:0045792;negative regulation of cell size;0.00456074451371298!GO:0006144;purine base metabolic process;0.00461280971322286!GO:0031902;late endosome membrane;0.00468657377108249!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0047765837015753!GO:0045047;protein targeting to ER;0.0047765837015753!GO:0031252;leading edge;0.00484455873601599!GO:0045893;positive regulation of transcription, DNA-dependent;0.00495060679375806!GO:0005637;nuclear inner membrane;0.00500644854918242!GO:0005876;spindle microtubule;0.00510248985606537!GO:0008408;3'-5' exonuclease activity;0.00536755177413149!GO:0019843;rRNA binding;0.00541314186388825!GO:0046474;glycerophospholipid biosynthetic process;0.00572066029436737!GO:0016272;prefoldin complex;0.00572066029436737!GO:0030308;negative regulation of cell growth;0.00604156945781452!GO:0008610;lipid biosynthetic process;0.00611632072518977!GO:0009119;ribonucleoside metabolic process;0.00613874474667488!GO:0000922;spindle pole;0.0061533898009682!GO:0030127;COPII vesicle coat;0.00617997236327884!GO:0012507;ER to Golgi transport vesicle membrane;0.00617997236327884!GO:0046467;membrane lipid biosynthetic process;0.00623903029530767!GO:0030663;COPI coated vesicle membrane;0.00624458551537521!GO:0030126;COPI vesicle coat;0.00624458551537521!GO:0006892;post-Golgi vesicle-mediated transport;0.00639313005342385!GO:0030133;transport vesicle;0.00651614853687796!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00654120794290364!GO:0016584;nucleosome positioning;0.00654120794290364!GO:0006595;polyamine metabolic process;0.00660611046249368!GO:0045926;negative regulation of growth;0.00662492222080654!GO:0031901;early endosome membrane;0.00663158901053405!GO:0031124;mRNA 3'-end processing;0.00682417355026457!GO:0044454;nuclear chromosome part;0.0068348578452794!GO:0043433;negative regulation of transcription factor activity;0.00707427606419309!GO:0046112;nucleobase biosynthetic process;0.00715226890927074!GO:0003756;protein disulfide isomerase activity;0.00715446940781247!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00715446940781247!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00725429716872034!GO:0008637;apoptotic mitochondrial changes;0.00725429716872034!GO:0015631;tubulin binding;0.00744169993113311!GO:0015992;proton transport;0.0076168688793672!GO:0006405;RNA export from nucleus;0.00768207200511153!GO:0033673;negative regulation of kinase activity;0.00768248921014749!GO:0006469;negative regulation of protein kinase activity;0.00768248921014749!GO:0043624;cellular protein complex disassembly;0.0077198631868103!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0077198631868103!GO:0043065;positive regulation of apoptosis;0.00774214155498858!GO:0003711;transcription elongation regulator activity;0.00774214155498858!GO:0009451;RNA modification;0.00789476740740116!GO:0005905;coated pit;0.00790006376482125!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00790006376482125!GO:0015399;primary active transmembrane transporter activity;0.00790006376482125!GO:0008652;amino acid biosynthetic process;0.00793647747468424!GO:0030658;transport vesicle membrane;0.00802011248945909!GO:0048468;cell development;0.00819542841946002!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00819542841946002!GO:0043022;ribosome binding;0.00821147297480503!GO:0046489;phosphoinositide biosynthetic process;0.00821147297480503!GO:0032984;macromolecular complex disassembly;0.00826714301785245!GO:0006818;hydrogen transport;0.00866431967230358!GO:0004003;ATP-dependent DNA helicase activity;0.0088188408990793!GO:0032507;maintenance of cellular protein localization;0.00899034020401485!GO:0030118;clathrin coat;0.00901416407121487!GO:0006338;chromatin remodeling;0.00908381473017363!GO:0008632;apoptotic program;0.00933724162712575!GO:0008097;5S rRNA binding;0.00935054721107016!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00964591191672893!GO:0030137;COPI-coated vesicle;0.00980463176459452!GO:0000786;nucleosome;0.00985336484613716!GO:0043241;protein complex disassembly;0.00989873328866244!GO:0006611;protein export from nucleus;0.0102222861034151!GO:0048487;beta-tubulin binding;0.0102797847172043!GO:0043068;positive regulation of programmed cell death;0.0102974776838827!GO:0000339;RNA cap binding;0.0102974776838827!GO:0006270;DNA replication initiation;0.0105588521782377!GO:0005832;chaperonin-containing T-complex;0.010583630263192!GO:0006376;mRNA splice site selection;0.010583630263192!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010583630263192!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0110518591132638!GO:0005669;transcription factor TFIID complex;0.0110689577234946!GO:0032259;methylation;0.0111771567923051!GO:0006740;NADPH regeneration;0.0111857527464792!GO:0006098;pentose-phosphate shunt;0.0111857527464792!GO:0007264;small GTPase mediated signal transduction;0.0112145369423633!GO:0032200;telomere organization and biogenesis;0.0112539499256608!GO:0000723;telomere maintenance;0.0112539499256608!GO:0051348;negative regulation of transferase activity;0.0115721235896739!GO:0042393;histone binding;0.0116328111561373!GO:0000178;exosome (RNase complex);0.0117304719395491!GO:0040008;regulation of growth;0.0117619445248016!GO:0043601;nuclear replisome;0.0119422492037875!GO:0030894;replisome;0.0119422492037875!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0119501308362922!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0119501308362922!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0119979366791331!GO:0000792;heterochromatin;0.0122157744176817!GO:0043130;ubiquitin binding;0.0132161004608588!GO:0032182;small conjugating protein binding;0.0132161004608588!GO:0006607;NLS-bearing substrate import into nucleus;0.0132387043184425!GO:0009066;aspartate family amino acid metabolic process;0.0134789698586751!GO:0045185;maintenance of protein localization;0.0136107489852912!GO:0005758;mitochondrial intermembrane space;0.0137667488718678!GO:0030660;Golgi-associated vesicle membrane;0.0139954784282358!GO:0007034;vacuolar transport;0.0142099531743671!GO:0006695;cholesterol biosynthetic process;0.014327302359076!GO:0016044;membrane organization and biogenesis;0.0145830442450408!GO:0030659;cytoplasmic vesicle membrane;0.0146878991025956!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0147842370383577!GO:0000070;mitotic sister chromatid segregation;0.0149472152212033!GO:0045947;negative regulation of translational initiation;0.0149472152212033!GO:0000819;sister chromatid segregation;0.0149472152212033!GO:0000287;magnesium ion binding;0.0149882159975339!GO:0009081;branched chain family amino acid metabolic process;0.0151888912178555!GO:0051098;regulation of binding;0.0155525428540896!GO:0031577;spindle checkpoint;0.0156113230610734!GO:0000097;sulfur amino acid biosynthetic process;0.0156243871452563!GO:0051101;regulation of DNA binding;0.0156862705910668!GO:0012506;vesicle membrane;0.0160194022914067!GO:0017166;vinculin binding;0.0160204671006024!GO:0043414;biopolymer methylation;0.0162653750623223!GO:0050750;low-density lipoprotein receptor binding;0.0162653750623223!GO:0006213;pyrimidine nucleoside metabolic process;0.0163138820669477!GO:0016791;phosphoric monoester hydrolase activity;0.0167156155952838!GO:0046822;regulation of nucleocytoplasmic transport;0.0169424317016734!GO:0031970;organelle envelope lumen;0.0171863573290881!GO:0046128;purine ribonucleoside metabolic process;0.0171863573290881!GO:0042278;purine nucleoside metabolic process;0.0171863573290881!GO:0016301;kinase activity;0.0173181868269912!GO:0006400;tRNA modification;0.0173181868269912!GO:0047485;protein N-terminus binding;0.0175813525937618!GO:0000086;G2/M transition of mitotic cell cycle;0.0178172188462795!GO:0004532;exoribonuclease activity;0.0181258787945092!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0181258787945092!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.018360736479451!GO:0015002;heme-copper terminal oxidase activity;0.018360736479451!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.018360736479451!GO:0004129;cytochrome-c oxidase activity;0.018360736479451!GO:0044433;cytoplasmic vesicle part;0.0188422030372718!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0189231154829198!GO:0048518;positive regulation of biological process;0.0189728936283304!GO:0051651;maintenance of cellular localization;0.0193453428629317!GO:0031123;RNA 3'-end processing;0.0194007624111599!GO:0006730;one-carbon compound metabolic process;0.0196520382486708!GO:0030029;actin filament-based process;0.0199187564298881!GO:0030132;clathrin coat of coated pit;0.0200524867972761!GO:0000725;recombinational repair;0.0203390177383196!GO:0000724;double-strand break repair via homologous recombination;0.0203390177383196!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0205892839516634!GO:0032774;RNA biosynthetic process;0.020695041920621!GO:0030433;ER-associated protein catabolic process;0.0209860349754163!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0209860349754163!GO:0008180;signalosome;0.0210192237383354!GO:0006220;pyrimidine nucleotide metabolic process;0.0212861193746717!GO:0019900;kinase binding;0.0213189332915475!GO:0006360;transcription from RNA polymerase I promoter;0.0213189332915475!GO:0032940;secretion by cell;0.0213580148562242!GO:0005774;vacuolar membrane;0.0215290248056588!GO:0006650;glycerophospholipid metabolic process;0.0215291285207436!GO:0030384;phosphoinositide metabolic process;0.0217747982660861!GO:0000152;nuclear ubiquitin ligase complex;0.0217747982660861!GO:0050681;androgen receptor binding;0.0220378348252342!GO:0042770;DNA damage response, signal transduction;0.0224888230128376!GO:0031625;ubiquitin protein ligase binding;0.0225709249532181!GO:0030518;steroid hormone receptor signaling pathway;0.0228591102416602!GO:0050790;regulation of catalytic activity;0.0229099484031844!GO:0006519;amino acid and derivative metabolic process;0.0230040253322571!GO:0003725;double-stranded RNA binding;0.0232830928895026!GO:0006497;protein amino acid lipidation;0.0234138320303636!GO:0008276;protein methyltransferase activity;0.0235209105783072!GO:0006301;postreplication repair;0.0239090632918777!GO:0022408;negative regulation of cell-cell adhesion;0.0239090632918777!GO:0051716;cellular response to stimulus;0.0240062779433265!GO:0006351;transcription, DNA-dependent;0.0244309179762037!GO:0016860;intramolecular oxidoreductase activity;0.0244309179762037!GO:0030100;regulation of endocytosis;0.0251900854029493!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.025532750470033!GO:0001952;regulation of cell-matrix adhesion;0.025894778260513!GO:0006378;mRNA polyadenylation;0.0268783475433188!GO:0009967;positive regulation of signal transduction;0.0274370003877435!GO:0009303;rRNA transcription;0.0275071696531908!GO:0030032;lamellipodium biogenesis;0.0282102378080854!GO:0006007;glucose catabolic process;0.0285676938036362!GO:0031570;DNA integrity checkpoint;0.028788116219359!GO:0022411;cellular component disassembly;0.0289185137008371!GO:0001836;release of cytochrome c from mitochondria;0.0291284792517867!GO:0007041;lysosomal transport;0.029651224280096!GO:0030968;unfolded protein response;0.0297277538031193!GO:0022890;inorganic cation transmembrane transporter activity;0.0304559725487242!GO:0005784;translocon complex;0.0310340096036648!GO:0042158;lipoprotein biosynthetic process;0.0311002488939275!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0313902768661992!GO:0007346;regulation of progression through mitotic cell cycle;0.0316131216656317!GO:0005869;dynactin complex;0.0316852693341572!GO:0019206;nucleoside kinase activity;0.0321244436896797!GO:0046982;protein heterodimerization activity;0.0326155335065429!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.032921251485241!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0329329706528027!GO:0030224;monocyte differentiation;0.0329342523093287!GO:0051338;regulation of transferase activity;0.0331004241340515!GO:0009067;aspartate family amino acid biosynthetic process;0.0331004241340515!GO:0000793;condensed chromosome;0.033145913925782!GO:0008047;enzyme activator activity;0.033145913925782!GO:0007004;telomere maintenance via telomerase;0.0333300500354119!GO:0016579;protein deubiquitination;0.0339247686706652!GO:0000303;response to superoxide;0.0341815791874732!GO:0043549;regulation of kinase activity;0.0345184765310401!GO:0007021;tubulin folding;0.0351397342758559!GO:0006541;glutamine metabolic process;0.0360063391814194!GO:0008536;Ran GTPase binding;0.0368046030425238!GO:0043189;H4/H2A histone acetyltransferase complex;0.0378629275511669!GO:0009113;purine base biosynthetic process;0.0385510181693266!GO:0035267;NuA4 histone acetyltransferase complex;0.0387724988956964!GO:0006643;membrane lipid metabolic process;0.0388239206153134!GO:0043492;ATPase activity, coupled to movement of substances;0.0388268708613108!GO:0030119;AP-type membrane coat adaptor complex;0.0393944619953519!GO:0051053;negative regulation of DNA metabolic process;0.0394102775608109!GO:0019901;protein kinase binding;0.0402130065733439!GO:0008629;induction of apoptosis by intracellular signals;0.0404556100807599!GO:0040029;regulation of gene expression, epigenetic;0.0404945369577647!GO:0000910;cytokinesis;0.0405194888654556!GO:0005663;DNA replication factor C complex;0.0408270839766744!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0409405057868041!GO:0016311;dephosphorylation;0.0419134732688244!GO:0005765;lysosomal membrane;0.0419134732688244!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0419134732688244!GO:0010257;NADH dehydrogenase complex assembly;0.0419134732688244!GO:0033108;mitochondrial respiratory chain complex assembly;0.0419134732688244!GO:0003677;DNA binding;0.0430755648513222!GO:0005862;muscle thin filament tropomyosin;0.0431389852594641!GO:0004721;phosphoprotein phosphatase activity;0.0434821877339289!GO:0051235;maintenance of localization;0.0435133152774994!GO:0009225;nucleotide-sugar metabolic process;0.0440904665444934!GO:0004300;enoyl-CoA hydratase activity;0.0448563656098558!GO:0008538;proteasome activator activity;0.0454587331927964!GO:0000781;chromosome, telomeric region;0.0456657652294392!GO:0004659;prenyltransferase activity;0.0457247875306854!GO:0001953;negative regulation of cell-matrix adhesion;0.0457315091460288!GO:0045449;regulation of transcription;0.0457538782977569!GO:0044437;vacuolar part;0.046292256594664!GO:0009124;nucleoside monophosphate biosynthetic process;0.0463609042538688!GO:0009123;nucleoside monophosphate metabolic process;0.0463609042538688!GO:0008243;plasminogen activator activity;0.0465177624169139!GO:0046426;negative regulation of JAK-STAT cascade;0.0465739578631578!GO:0019887;protein kinase regulator activity;0.0469278866714933!GO:0006206;pyrimidine base metabolic process;0.0470494930589267!GO:0004860;protein kinase inhibitor activity;0.0472433914214316!GO:0032404;mismatch repair complex binding;0.0473919802060053!GO:0006596;polyamine biosynthetic process;0.047456394452592!GO:0004239;methionyl aminopeptidase activity;0.0476534140049774!GO:0033559;unsaturated fatty acid metabolic process;0.0478819905133151!GO:0006636;unsaturated fatty acid biosynthetic process;0.0478819905133151!GO:0031529;ruffle organization and biogenesis;0.0486935133262846!GO:0004197;cysteine-type endopeptidase activity;0.0491490248073247!GO:0050811;GABA receptor binding;0.049170756651018!GO:0033239;negative regulation of amine metabolic process;0.0494341012103941!GO:0045763;negative regulation of amino acid metabolic process;0.0494341012103941!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0494341012103941 | |||
|sample_id=10492 | |sample_id=10492 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=bladder | |sample_tissue=bladder | ||
|top_motifs=HIF1A:2.07117755363;bHLH_family:1.97317584864;NKX2-1,4:1.83752597816;PITX1..3:1.82771282409;FOXQ1:1.75164944084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.48510085906;E2F1..5:1.35523424264;MYB:1.35090401408;AIRE:1.2301506833;NKX6-1,2:1.15225074608;NKX3-1:1.12627029136;ZNF384:1.03066465365;FOXP1:1.01862918748;PDX1:0.983695344002;NFY{A,B,C}:0.970026747997;PPARG:0.954037696546;CDX1,2,4:0.915563389541;NKX2-2,8:0.836745354092;BREu{core}:0.83660251887;ZBTB16:0.690066311784;HBP1_HMGB_SSRP1_UBTF:0.680354694868;ELK1,4_GABP{A,B1}:0.667500230729;CDC5L:0.663343933415;IRF7:0.652070474381;TFDP1:0.622429171331;NRF1:0.585096058815;AHR_ARNT_ARNT2:0.581653769529;GFI1:0.574599888878;PAX3,7:0.574170945224;TEF:0.573329043052;MYOD1:0.571201323198;ARID5B:0.569502080707;FOXA2:0.539427014254;EVI1:0.523840797813;YY1:0.502217115135;ZNF143:0.490673606529;LHX3,4:0.47750981808;TEAD1:0.474589759014;FOXD3:0.465765649662;PBX1:0.44861467548;SP1:0.447806016695;HOXA9_MEIS1:0.404675919759;TAL1_TCF{3,4,12}:0.403865776003;HOX{A4,D4}:0.397145901006;IRF1,2:0.370735909172;NKX3-2:0.353240007434;TBX4,5:0.344756583188;FOXM1:0.321628287897;STAT5{A,B}:0.314285277762;FOXN1:0.313370122308;HSF1,2:0.302180920538;ZFP161:0.29957883493;NFKB1_REL_RELA:0.285679045705;UFEwm:0.273126196484;ZIC1..3:0.269307266086;XBP1:0.254828065436;POU1F1:0.247427763311;ATF5_CREB3:0.240414972835;HES1:0.217238451479;PAX4:0.201419211644;RREB1:0.196491238022;NR6A1:0.192384447429;EN1,2:0.183192156321;POU3F1..4:0.178423237935;HNF4A_NR2F1,2:0.177347528903;CEBPA,B_DDIT3:0.174926981114;KLF4:0.170258052237;RFX1:0.147976477939;ADNP_IRX_SIX_ZHX:0.141767331015;SNAI1..3:0.134620629763;FOS_FOS{B,L1}_JUN{B,D}:0.134483709571;FOXL1:0.129140870356;RXRA_VDR{dimer}:0.125070005735;ZBTB6:0.115393715041;CUX2:0.107127425453;RBPJ:0.0925240537995;RXR{A,B,G}:0.0898039987668;GFI1B:0.0794786450709;ONECUT1,2:0.0792565074716;FOXO1,3,4:0.0643732485212;IKZF2:0.0583683968026;FOXP3:0.0546083304683;SREBF1,2:0.0371281495484;DMAP1_NCOR{1,2}_SMARC:0.0309271361938;MZF1:0.0259682231547;ATF4:0.000175594846128;EBF1:-0.00238297117965;GTF2A1,2:-0.00639818273022;TOPORS:-0.0127722961734;PAX8:-0.0247688347448;MTF1:-0.0280089635862;BPTF:-0.028594718048;FOX{D1,D2}:-0.0297108988283;BACH2:-0.0297622667543;TBP:-0.0366415741001;GATA4:-0.0440576478132;ZNF148:-0.049285665736;FOSL2:-0.0514971318227;NFE2:-0.0625489091837;TLX2:-0.0654779516967;STAT2,4,6:-0.0703873538637;HOX{A5,B5}:-0.0749198584648;HOX{A6,A7,B6,B7}:-0.0790566557842;LMO2:-0.0927152778947;EP300:-0.107962271245;T:-0.116067346583;TLX1..3_NFIC{dimer}:-0.130761324543;MEF2{A,B,C,D}:-0.136396319818;TFAP2{A,C}:-0.151973025786;HLF:-0.153271625392;RUNX1..3:-0.161733412249;DBP:-0.172041878855;POU5F1:-0.176797872444;NR3C1:-0.177775280255;CRX:-0.183590513012;PATZ1:-0.184996707509;CREB1:-0.187972163951;NR1H4:-0.202158969107;HNF1A:-0.218374043621;RFX2..5_RFXANK_RFXAP:-0.230789554531;MED-1{core}:-0.2351415792;ALX1:-0.237978732238;POU2F1..3:-0.24157097285;SOX17:-0.242212064653;FOX{I1,J2}:-0.246567636517;XCPE1{core}:-0.267332946895;MAZ:-0.271557268437;TFAP2B:-0.27961600147;ZEB1:-0.28085456009;ZNF423:-0.284332695714;PAX5:-0.289434227218;ALX4:-0.290224781166;HIC1:-0.291078025915;LEF1_TCF7_TCF7L1,2:-0.294457009238;POU6F1:-0.298980422259;RORA:-0.300833617994;GTF2I:-0.303226692338;ELF1,2,4:-0.304154768259;NFE2L2:-0.312925378004;PAX1,9:-0.315764980437;MYBL2:-0.318898333599;ATF2:-0.323320883926;GZF1:-0.32774959833;NKX2-3_NKX2-5:-0.33081842122;NFIX:-0.334663184373;SOX5:-0.335640677952;SRF:-0.339409536108;PRDM1:-0.35302336497;FOX{F1,F2,J1}:-0.365027646002;PRRX1,2:-0.365642073737;TP53:-0.368589731144;MYFfamily:-0.36886997195;REST:-0.381522529861;OCT4_SOX2{dimer}:-0.389859199863;MTE{core}:-0.396423092219;NR5A1,2:-0.411185165679;ATF6:-0.421438793875;ESR1:-0.439601203753;PAX6:-0.493752658875;PAX2:-0.495161462166;IKZF1:-0.498081838604;SPIB:-0.506587600494;ESRRA:-0.507492138385;NANOG:-0.510368513569;HMGA1,2:-0.526822199576;MAFB:-0.528391510211;GLI1..3:-0.586056105326;SPI1:-0.635907513;TFCP2:-0.641165789239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.670048340134;STAT1,3:-0.67272905764;NHLH1,2:-0.679165606217;GATA6:-0.711256230414;SOX{8,9,10}:-0.720830922755;HAND1,2:-0.798129006678;ETS1,2:-0.845709791156;NFE2L1:-0.865229141237;NFATC1..3:-0.871611522362;VSX1,2:-0.8738693268;JUN:-0.901183481395;NFIL3:-1.05180094055;GCM1,2:-1.05255939261;EGR1..3:-1.06036560375;SOX2:-1.18058680782;AR:-1.18571007094;ZNF238:-1.20353697584;TFAP4:-1.22980667054;TGIF1:-1.32247842907;NANOG{mouse}:-1.38971323245;HMX1:-1.55180752939;SMAD1..7,9:-1.88379582268;SPZ1:-1.99815042805 | |top_motifs=HIF1A:2.07117755363;bHLH_family:1.97317584864;NKX2-1,4:1.83752597816;PITX1..3:1.82771282409;FOXQ1:1.75164944084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.48510085906;E2F1..5:1.35523424264;MYB:1.35090401408;AIRE:1.2301506833;NKX6-1,2:1.15225074608;NKX3-1:1.12627029136;ZNF384:1.03066465365;FOXP1:1.01862918748;PDX1:0.983695344002;NFY{A,B,C}:0.970026747997;PPARG:0.954037696546;CDX1,2,4:0.915563389541;NKX2-2,8:0.836745354092;BREu{core}:0.83660251887;ZBTB16:0.690066311784;HBP1_HMGB_SSRP1_UBTF:0.680354694868;ELK1,4_GABP{A,B1}:0.667500230729;CDC5L:0.663343933415;IRF7:0.652070474381;TFDP1:0.622429171331;NRF1:0.585096058815;AHR_ARNT_ARNT2:0.581653769529;GFI1:0.574599888878;PAX3,7:0.574170945224;TEF:0.573329043052;MYOD1:0.571201323198;ARID5B:0.569502080707;FOXA2:0.539427014254;EVI1:0.523840797813;YY1:0.502217115135;ZNF143:0.490673606529;LHX3,4:0.47750981808;TEAD1:0.474589759014;FOXD3:0.465765649662;PBX1:0.44861467548;SP1:0.447806016695;HOXA9_MEIS1:0.404675919759;TAL1_TCF{3,4,12}:0.403865776003;HOX{A4,D4}:0.397145901006;IRF1,2:0.370735909172;NKX3-2:0.353240007434;TBX4,5:0.344756583188;FOXM1:0.321628287897;STAT5{A,B}:0.314285277762;FOXN1:0.313370122308;HSF1,2:0.302180920538;ZFP161:0.29957883493;NFKB1_REL_RELA:0.285679045705;UFEwm:0.273126196484;ZIC1..3:0.269307266086;XBP1:0.254828065436;POU1F1:0.247427763311;ATF5_CREB3:0.240414972835;HES1:0.217238451479;PAX4:0.201419211644;RREB1:0.196491238022;NR6A1:0.192384447429;EN1,2:0.183192156321;POU3F1..4:0.178423237935;HNF4A_NR2F1,2:0.177347528903;CEBPA,B_DDIT3:0.174926981114;KLF4:0.170258052237;RFX1:0.147976477939;ADNP_IRX_SIX_ZHX:0.141767331015;SNAI1..3:0.134620629763;FOS_FOS{B,L1}_JUN{B,D}:0.134483709571;FOXL1:0.129140870356;RXRA_VDR{dimer}:0.125070005735;ZBTB6:0.115393715041;CUX2:0.107127425453;RBPJ:0.0925240537995;RXR{A,B,G}:0.0898039987668;GFI1B:0.0794786450709;ONECUT1,2:0.0792565074716;FOXO1,3,4:0.0643732485212;IKZF2:0.0583683968026;FOXP3:0.0546083304683;SREBF1,2:0.0371281495484;DMAP1_NCOR{1,2}_SMARC:0.0309271361938;MZF1:0.0259682231547;ATF4:0.000175594846128;EBF1:-0.00238297117965;GTF2A1,2:-0.00639818273022;TOPORS:-0.0127722961734;PAX8:-0.0247688347448;MTF1:-0.0280089635862;BPTF:-0.028594718048;FOX{D1,D2}:-0.0297108988283;BACH2:-0.0297622667543;TBP:-0.0366415741001;GATA4:-0.0440576478132;ZNF148:-0.049285665736;FOSL2:-0.0514971318227;NFE2:-0.0625489091837;TLX2:-0.0654779516967;STAT2,4,6:-0.0703873538637;HOX{A5,B5}:-0.0749198584648;HOX{A6,A7,B6,B7}:-0.0790566557842;LMO2:-0.0927152778947;EP300:-0.107962271245;T:-0.116067346583;TLX1..3_NFIC{dimer}:-0.130761324543;MEF2{A,B,C,D}:-0.136396319818;TFAP2{A,C}:-0.151973025786;HLF:-0.153271625392;RUNX1..3:-0.161733412249;DBP:-0.172041878855;POU5F1:-0.176797872444;NR3C1:-0.177775280255;CRX:-0.183590513012;PATZ1:-0.184996707509;CREB1:-0.187972163951;NR1H4:-0.202158969107;HNF1A:-0.218374043621;RFX2..5_RFXANK_RFXAP:-0.230789554531;MED-1{core}:-0.2351415792;ALX1:-0.237978732238;POU2F1..3:-0.24157097285;SOX17:-0.242212064653;FOX{I1,J2}:-0.246567636517;XCPE1{core}:-0.267332946895;MAZ:-0.271557268437;TFAP2B:-0.27961600147;ZEB1:-0.28085456009;ZNF423:-0.284332695714;PAX5:-0.289434227218;ALX4:-0.290224781166;HIC1:-0.291078025915;LEF1_TCF7_TCF7L1,2:-0.294457009238;POU6F1:-0.298980422259;RORA:-0.300833617994;GTF2I:-0.303226692338;ELF1,2,4:-0.304154768259;NFE2L2:-0.312925378004;PAX1,9:-0.315764980437;MYBL2:-0.318898333599;ATF2:-0.323320883926;GZF1:-0.32774959833;NKX2-3_NKX2-5:-0.33081842122;NFIX:-0.334663184373;SOX5:-0.335640677952;SRF:-0.339409536108;PRDM1:-0.35302336497;FOX{F1,F2,J1}:-0.365027646002;PRRX1,2:-0.365642073737;TP53:-0.368589731144;MYFfamily:-0.36886997195;REST:-0.381522529861;OCT4_SOX2{dimer}:-0.389859199863;MTE{core}:-0.396423092219;NR5A1,2:-0.411185165679;ATF6:-0.421438793875;ESR1:-0.439601203753;PAX6:-0.493752658875;PAX2:-0.495161462166;IKZF1:-0.498081838604;SPIB:-0.506587600494;ESRRA:-0.507492138385;NANOG:-0.510368513569;HMGA1,2:-0.526822199576;MAFB:-0.528391510211;GLI1..3:-0.586056105326;SPI1:-0.635907513;TFCP2:-0.641165789239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.670048340134;STAT1,3:-0.67272905764;NHLH1,2:-0.679165606217;GATA6:-0.711256230414;SOX{8,9,10}:-0.720830922755;HAND1,2:-0.798129006678;ETS1,2:-0.845709791156;NFE2L1:-0.865229141237;NFATC1..3:-0.871611522362;VSX1,2:-0.8738693268;JUN:-0.901183481395;NFIL3:-1.05180094055;GCM1,2:-1.05255939261;EGR1..3:-1.06036560375;SOX2:-1.18058680782;AR:-1.18571007094;ZNF238:-1.20353697584;TFAP4:-1.22980667054;TGIF1:-1.32247842907;NANOG{mouse}:-1.38971323245;HMX1:-1.55180752939;SMAD1..7,9:-1.88379582268;SPZ1:-1.99815042805 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10492-107B6;search_select_hide=table117:FF:10492-107B6 | |||
}} | }} | ||
Latest revision as of 14:27, 3 June 2020
| Name: | transitional-cell carcinoma cell line:JMSU1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11261 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11261
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11261
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.568 |
| 10 | 10 | 0.235 |
| 100 | 100 | 0.153 |
| 101 | 101 | 0.347 |
| 102 | 102 | 0.965 |
| 103 | 103 | 0.0161 |
| 104 | 104 | 0.757 |
| 105 | 105 | 0.874 |
| 106 | 106 | 0.00221 |
| 107 | 107 | 0.338 |
| 108 | 108 | 0.449 |
| 109 | 109 | 0.904 |
| 11 | 11 | 0.536 |
| 110 | 110 | 0.881 |
| 111 | 111 | 0.654 |
| 112 | 112 | 0.0185 |
| 113 | 113 | 0.0124 |
| 114 | 114 | 0.166 |
| 115 | 115 | 0.754 |
| 116 | 116 | 0.846 |
| 117 | 117 | 0.447 |
| 118 | 118 | 0.388 |
| 119 | 119 | 0.0886 |
| 12 | 12 | 0.799 |
| 120 | 120 | 0.394 |
| 121 | 121 | 0.224 |
| 122 | 122 | 0.591 |
| 123 | 123 | 0.911 |
| 124 | 124 | 0.134 |
| 125 | 125 | 0.928 |
| 126 | 126 | 0.736 |
| 127 | 127 | 0.303 |
| 128 | 128 | 0.0158 |
| 129 | 129 | 0.188 |
| 13 | 13 | 0.137 |
| 130 | 130 | 0.436 |
| 131 | 131 | 0.802 |
| 132 | 132 | 0.546 |
| 133 | 133 | 0.621 |
| 134 | 134 | 0.0751 |
| 135 | 135 | 0.00589 |
| 136 | 136 | 0.043 |
| 137 | 137 | 0.364 |
| 138 | 138 | 0.629 |
| 139 | 139 | 0.0483 |
| 14 | 14 | 0.39 |
| 140 | 140 | 0.0149 |
| 141 | 141 | 0.604 |
| 142 | 142 | 0.465 |
| 143 | 143 | 0.00573 |
| 144 | 144 | 0.255 |
| 145 | 145 | 0.377 |
| 146 | 146 | 0.149 |
| 147 | 147 | 0.941 |
| 148 | 148 | 0.156 |
| 149 | 149 | 0.0609 |
| 15 | 15 | 0.275 |
| 150 | 150 | 0.886 |
| 151 | 151 | 0.207 |
| 152 | 152 | 0.0522 |
| 153 | 153 | 0.568 |
| 154 | 154 | 0.954 |
| 155 | 155 | 0.46 |
| 156 | 156 | 0.734 |
| 157 | 157 | 0.8 |
| 158 | 158 | 0.164 |
| 159 | 159 | 0.25 |
| 16 | 16 | 0.521 |
| 160 | 160 | 0.476 |
| 161 | 161 | 0.845 |
| 162 | 162 | 0.586 |
| 163 | 163 | 0.168 |
| 164 | 164 | 0.152 |
| 165 | 165 | 0.193 |
| 166 | 166 | 0.285 |
| 167 | 167 | 0.88 |
| 168 | 168 | 0.584 |
| 169 | 169 | 0.0164 |
| 17 | 17 | 0.37 |
| 18 | 18 | 0.279 |
| 19 | 19 | 0.25 |
| 2 | 2 | 0.282 |
| 20 | 20 | 0.0352 |
| 21 | 21 | 0.053 |
| 22 | 22 | 0.0549 |
| 23 | 23 | 0.11 |
| 24 | 24 | 0.813 |
| 25 | 25 | 0.365 |
| 26 | 26 | 0.702 |
| 27 | 27 | 0.0282 |
| 28 | 28 | 0.385 |
| 29 | 29 | 0.418 |
| 3 | 3 | 0.678 |
| 30 | 30 | 0.583 |
| 31 | 31 | 0.132 |
| 32 | 32 | 0.0775 |
| 33 | 33 | 0.548 |
| 34 | 34 | 0.248 |
| 35 | 35 | 0.213 |
| 36 | 36 | 0.691 |
| 37 | 37 | 0.722 |
| 38 | 38 | 0.358 |
| 39 | 39 | 0.78 |
| 4 | 4 | 0.209 |
| 40 | 40 | 0.766 |
| 41 | 41 | 0.00183 |
| 42 | 42 | 0.756 |
| 43 | 43 | 0.176 |
| 44 | 44 | 0.575 |
| 45 | 45 | 0.122 |
| 46 | 46 | 0.0947 |
| 47 | 47 | 0.959 |
| 48 | 48 | 0.864 |
| 49 | 49 | 0.117 |
| 5 | 5 | 0.0395 |
| 50 | 50 | 0.506 |
| 51 | 51 | 0.363 |
| 52 | 52 | 0.203 |
| 53 | 53 | 0.517 |
| 54 | 54 | 0.306 |
| 55 | 55 | 0.0783 |
| 56 | 56 | 0.69 |
| 57 | 57 | 0.929 |
| 58 | 58 | 0.394 |
| 59 | 59 | 0.106 |
| 6 | 6 | 0.397 |
| 60 | 60 | 0.0496 |
| 61 | 61 | 0.353 |
| 62 | 62 | 0.129 |
| 63 | 63 | 0.865 |
| 64 | 64 | 0.612 |
| 65 | 65 | 0.149 |
| 66 | 66 | 0.417 |
| 67 | 67 | 0.605 |
| 68 | 68 | 0.323 |
| 69 | 69 | 0.109 |
| 7 | 7 | 0.451 |
| 70 | 70 | 0.113 |
| 71 | 71 | 0.833 |
| 72 | 72 | 0.483 |
| 73 | 73 | 0.19 |
| 74 | 74 | 0.796 |
| 75 | 75 | 0.484 |
| 76 | 76 | 0.674 |
| 77 | 77 | 0.338 |
| 78 | 78 | 0.694 |
| 79 | 79 | 0.0361 |
| 8 | 8 | 0.322 |
| 80 | 80 | 0.0724 |
| 81 | 81 | 0.339 |
| 82 | 82 | 0.00186 |
| 83 | 83 | 0.576 |
| 84 | 84 | 0.927 |
| 85 | 85 | 0.0057 |
| 86 | 86 | 0.571 |
| 87 | 87 | 0.219 |
| 88 | 88 | 0.992 |
| 89 | 89 | 0.00445 |
| 9 | 9 | 0.193 |
| 90 | 90 | 0.267 |
| 91 | 91 | 0.0336 |
| 92 | 92 | 0.151 |
| 93 | 93 | 0.541 |
| 94 | 94 | 0.0519 |
| 95 | 95 | 0.66 |
| 96 | 96 | 0.198 |
| 97 | 97 | 0.894 |
| 98 | 98 | 0.138 |
| 99 | 99 | 0.974 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11261
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102869 transitional cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0001062 (anatomical entity)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102869 (transitional cell carcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
