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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005630
|accession_numbers=CAGE;DRX008059;DRR008931;DRZ000356;DRZ001741;DRZ011706;DRZ013091
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|comment=
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|def=
|def=
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Line 35: Line 41:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor2.CNhs12205.11625-122B5.hg19.nobarcode.rdna.fa.gz
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|id=FF:11625-122B5
|id=FF:11625-122B5
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11625
|name=CD34+ Progenitors, donor2
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|namespace=FANTOM5
Line 42: Line 60:
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|rna_box=122
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|rna_catalog_number=3H100-60-5
Line 57: Line 78:
|rna_weight_ug=0.5
|rna_weight_ug=0.5
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
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|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.33716087331819e-210!GO:0043227;membrane-bound organelle;2.18037574020221e-177!GO:0043231;intracellular membrane-bound organelle;3.6909604938471e-177!GO:0043226;organelle;2.61546316353832e-168!GO:0043229;intracellular organelle;1.33572220463957e-167!GO:0005737;cytoplasm;9.390092505679e-130!GO:0005634;nucleus;4.20957390612436e-100!GO:0044422;organelle part;7.73900350229612e-95!GO:0043170;macromolecule metabolic process;2.93550213248383e-93!GO:0044446;intracellular organelle part;2.93550213248383e-93!GO:0044237;cellular metabolic process;4.0352882786233e-93!GO:0044238;primary metabolic process;2.57996692404292e-90!GO:0032991;macromolecular complex;1.25711423825063e-83!GO:0044444;cytoplasmic part;6.81077308287075e-82!GO:0003723;RNA binding;1.98022649895483e-77!GO:0005515;protein binding;5.86108985327928e-77!GO:0030529;ribonucleoprotein complex;4.73966997050058e-72!GO:0044428;nuclear part;5.37064014644322e-68!GO:0043283;biopolymer metabolic process;1.39557912869206e-65!GO:0010467;gene expression;7.85173226218386e-63!GO:0043233;organelle lumen;2.73635242398906e-57!GO:0031974;membrane-enclosed lumen;2.73635242398906e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.87376701108962e-55!GO:0006412;translation;4.75025300118684e-49!GO:0019538;protein metabolic process;3.87093799983604e-48!GO:0006396;RNA processing;1.30518119011036e-45!GO:0044267;cellular protein metabolic process;4.63165558005539e-45!GO:0031981;nuclear lumen;1.00816108332281e-44!GO:0033036;macromolecule localization;4.16298475791365e-44!GO:0044260;cellular macromolecule metabolic process;4.95335396783486e-44!GO:0016071;mRNA metabolic process;3.916929610426e-43!GO:0015031;protein transport;1.96167861323518e-42!GO:0043234;protein complex;3.25558651821284e-42!GO:0045184;establishment of protein localization;4.44743161447264e-41!GO:0008104;protein localization;6.87880621741526e-40!GO:0003676;nucleic acid binding;6.87880621741526e-40!GO:0005840;ribosome;2.03402007860339e-38!GO:0008380;RNA splicing;5.30158772999683e-38!GO:0016043;cellular component organization and biogenesis;3.04065897804222e-36!GO:0006397;mRNA processing;5.33572710745073e-36!GO:0005739;mitochondrion;1.55970600201749e-35!GO:0005829;cytosol;2.0905658062417e-35!GO:0016070;RNA metabolic process;4.20399454337395e-35!GO:0003735;structural constituent of ribosome;1.7876555429663e-34!GO:0009059;macromolecule biosynthetic process;8.26496696431066e-34!GO:0033279;ribosomal subunit;8.33069414019731e-33!GO:0065003;macromolecular complex assembly;1.20298675377121e-31!GO:0031090;organelle membrane;6.01322246093156e-30!GO:0046907;intracellular transport;8.67158069493085e-30!GO:0044249;cellular biosynthetic process;1.54538065022863e-29!GO:0005654;nucleoplasm;4.7286809551829e-29!GO:0006886;intracellular protein transport;5.19219564837123e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.44138650034175e-29!GO:0006915;apoptosis;1.29923742836043e-28!GO:0012501;programmed cell death;1.7982113977817e-28!GO:0005681;spliceosome;2.3109286955019e-28!GO:0009058;biosynthetic process;4.24373031205039e-28!GO:0031967;organelle envelope;1.40528684678264e-27!GO:0022607;cellular component assembly;1.66053476868159e-27!GO:0031975;envelope;2.81965008606544e-27!GO:0008219;cell death;4.74698523965214e-27!GO:0016265;death;4.74698523965214e-27!GO:0044445;cytosolic part;1.20221260929537e-26!GO:0006259;DNA metabolic process;5.60197313874292e-26!GO:0044429;mitochondrial part;1.08100176315085e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.55359085705703e-25!GO:0050794;regulation of cellular process;3.61015293637618e-25!GO:0000166;nucleotide binding;2.07790997444006e-24!GO:0044451;nucleoplasm part;7.65439444983841e-24!GO:0008134;transcription factor binding;1.32906559245094e-23!GO:0006996;organelle organization and biogenesis;2.65547834897524e-23!GO:0051649;establishment of cellular localization;4.89348120842756e-22!GO:0051641;cellular localization;1.0304700438198e-21!GO:0006512;ubiquitin cycle;1.03978882406877e-21!GO:0019941;modification-dependent protein catabolic process;3.95484933877171e-20!GO:0043632;modification-dependent macromolecule catabolic process;3.95484933877171e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;5.89553559742432e-20!GO:0006511;ubiquitin-dependent protein catabolic process;7.17314028931512e-20!GO:0044257;cellular protein catabolic process;1.3275981741583e-19!GO:0042981;regulation of apoptosis;2.74661729587549e-19!GO:0050789;regulation of biological process;3.45291042080343e-19!GO:0043067;regulation of programmed cell death;6.74255657590667e-19!GO:0022618;protein-RNA complex assembly;1.29597250668917e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.36363274059103e-18!GO:0016462;pyrophosphatase activity;2.36363274059103e-18!GO:0017111;nucleoside-triphosphatase activity;2.87762391939611e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.90434941197677e-18!GO:0006119;oxidative phosphorylation;3.05309998694098e-18!GO:0043412;biopolymer modification;3.32241053061754e-18!GO:0044265;cellular macromolecule catabolic process;4.08094070732278e-18!GO:0019222;regulation of metabolic process;1.95931196990655e-17!GO:0015935;small ribosomal subunit;2.74949538958613e-17!GO:0016604;nuclear body;2.82512495814331e-17!GO:0005740;mitochondrial envelope;2.85341734835363e-17!GO:0019866;organelle inner membrane;3.02933918129982e-17!GO:0031966;mitochondrial membrane;5.24116596615681e-17!GO:0032553;ribonucleotide binding;5.97261521455298e-17!GO:0032555;purine ribonucleotide binding;5.97261521455298e-17!GO:0043285;biopolymer catabolic process;7.25534079141946e-17!GO:0015934;large ribosomal subunit;1.64300690180405e-16!GO:0048523;negative regulation of cellular process;2.79677362043751e-16!GO:0043228;non-membrane-bound organelle;3.17831347734712e-16!GO:0043232;intracellular non-membrane-bound organelle;3.17831347734712e-16!GO:0006464;protein modification process;4.74394061682955e-16!GO:0016874;ligase activity;5.09494925735526e-16!GO:0006605;protein targeting;5.9146068588034e-16!GO:0043687;post-translational protein modification;6.38195430278414e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.02044944068609e-16!GO:0017076;purine nucleotide binding;9.96034320997535e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.92280566462543e-15!GO:0065007;biological regulation;1.93736238597842e-15!GO:0016607;nuclear speck;2.22168753518721e-15!GO:0007049;cell cycle;2.53438262527188e-15!GO:0003712;transcription cofactor activity;4.4452344415731e-15!GO:0005730;nucleolus;5.53491036873109e-15!GO:0005743;mitochondrial inner membrane;5.54933792333976e-15!GO:0006323;DNA packaging;7.86986527670437e-15!GO:0006913;nucleocytoplasmic transport;1.09408998309521e-14!GO:0044455;mitochondrial membrane part;1.14166357657715e-14!GO:0006366;transcription from RNA polymerase II promoter;1.33282793422998e-14!GO:0031323;regulation of cellular metabolic process;1.76034517916897e-14!GO:0030163;protein catabolic process;2.02790499995366e-14!GO:0051169;nuclear transport;2.27723750376901e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.8776280155084e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.19046491205091e-14!GO:0008135;translation factor activity, nucleic acid binding;4.41328822181791e-14!GO:0048519;negative regulation of biological process;4.99272151619219e-14!GO:0051276;chromosome organization and biogenesis;6.13697973334033e-14!GO:0016192;vesicle-mediated transport;6.64959955970609e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;7.77349471445438e-14!GO:0000375;RNA splicing, via transesterification reactions;7.77349471445438e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.77349471445438e-14!GO:0009057;macromolecule catabolic process;1.69752246677342e-13!GO:0007243;protein kinase cascade;4.29077607661137e-13!GO:0043069;negative regulation of programmed cell death;6.74319453013166e-13!GO:0005524;ATP binding;7.10131486636886e-13!GO:0043066;negative regulation of apoptosis;8.51263027202053e-13!GO:0044248;cellular catabolic process;1.15654584886931e-12!GO:0006457;protein folding;1.30221618338542e-12!GO:0032559;adenyl ribonucleotide binding;1.46081510898698e-12!GO:0010468;regulation of gene expression;1.5482729289965e-12!GO:0006350;transcription;1.71913904201665e-12!GO:0006793;phosphorus metabolic process;3.97272670572518e-12!GO:0006796;phosphate metabolic process;3.97272670572518e-12!GO:0048770;pigment granule;4.72358052780432e-12!GO:0042470;melanosome;4.72358052780432e-12!GO:0005746;mitochondrial respiratory chain;4.87182068637509e-12!GO:0006413;translational initiation;5.18404397383682e-12!GO:0003743;translation initiation factor activity;5.95277583166468e-12!GO:0006974;response to DNA damage stimulus;1.31125831920561e-11!GO:0051726;regulation of cell cycle;1.41857339924694e-11!GO:0006916;anti-apoptosis;1.51059387559212e-11!GO:0030554;adenyl nucleotide binding;2.6489599603345e-11!GO:0051246;regulation of protein metabolic process;3.14814893520753e-11!GO:0000074;regulation of progression through cell cycle;3.14814893520753e-11!GO:0065004;protein-DNA complex assembly;3.55982415736464e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.35862645495951e-11!GO:0006446;regulation of translational initiation;5.64873379865236e-11!GO:0004386;helicase activity;6.68389482660046e-11!GO:0050136;NADH dehydrogenase (quinone) activity;7.66451210756498e-11!GO:0003954;NADH dehydrogenase activity;7.66451210756498e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.66451210756498e-11!GO:0042623;ATPase activity, coupled;8.63524730476052e-11!GO:0016310;phosphorylation;1.00028175639851e-10!GO:0016887;ATPase activity;1.11876318266747e-10!GO:0031980;mitochondrial lumen;1.26849913487107e-10!GO:0005759;mitochondrial matrix;1.26849913487107e-10!GO:0008639;small protein conjugating enzyme activity;1.35918124612639e-10!GO:0005635;nuclear envelope;1.49751798999629e-10!GO:0004842;ubiquitin-protein ligase activity;1.5694357430212e-10!GO:0002376;immune system process;1.58168654098521e-10!GO:0017038;protein import;1.81995320035363e-10!GO:0012505;endomembrane system;1.81995320035363e-10!GO:0022402;cell cycle process;1.855327354516e-10!GO:0016564;transcription repressor activity;2.05194882257683e-10!GO:0007242;intracellular signaling cascade;2.22159570520956e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.01537224370244e-10!GO:0006333;chromatin assembly or disassembly;3.58007275808417e-10!GO:0031324;negative regulation of cellular metabolic process;5.50847690530447e-10!GO:0031965;nuclear membrane;6.11057532095978e-10!GO:0016568;chromatin modification;6.44590429488153e-10!GO:0032774;RNA biosynthetic process;7.03350707024589e-10!GO:0003713;transcription coactivator activity;7.16593005193436e-10!GO:0005768;endosome;7.60847078924065e-10!GO:0006351;transcription, DNA-dependent;8.17699609854712e-10!GO:0008026;ATP-dependent helicase activity;8.18552547481143e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.93097229769993e-10!GO:0042775;organelle ATP synthesis coupled electron transport;9.53973180068523e-10!GO:0042773;ATP synthesis coupled electron transport;9.53973180068523e-10!GO:0050657;nucleic acid transport;1.07870448876325e-09!GO:0051236;establishment of RNA localization;1.07870448876325e-09!GO:0050658;RNA transport;1.07870448876325e-09!GO:0019787;small conjugating protein ligase activity;1.24091916115233e-09!GO:0016563;transcription activator activity;1.5616186984208e-09!GO:0005794;Golgi apparatus;1.69794127646523e-09!GO:0006403;RNA localization;1.74205806112507e-09!GO:0006950;response to stress;1.97179226620738e-09!GO:0006281;DNA repair;1.97179226620738e-09!GO:0045449;regulation of transcription;2.15912639078237e-09!GO:0044453;nuclear membrane part;3.11781436610286e-09!GO:0030964;NADH dehydrogenase complex (quinone);3.26908236004539e-09!GO:0045271;respiratory chain complex I;3.26908236004539e-09!GO:0005747;mitochondrial respiratory chain complex I;3.26908236004539e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.4999568204922e-09!GO:0051082;unfolded protein binding;3.59097540863107e-09!GO:0065009;regulation of a molecular function;4.69099595103548e-09!GO:0000785;chromatin;5.39406339802061e-09!GO:0048522;positive regulation of cellular process;6.05617191632745e-09!GO:0019829;cation-transporting ATPase activity;6.05617191632745e-09!GO:0005694;chromosome;6.32829593258852e-09!GO:0009615;response to virus;6.44103395592717e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.04125863531532e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.20895118363943e-09!GO:0048193;Golgi vesicle transport;7.31281792380576e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.41062334104573e-09!GO:0045786;negative regulation of progression through cell cycle;7.64315114401126e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.40376050510919e-09!GO:0008565;protein transporter activity;9.50710452961861e-09!GO:0016481;negative regulation of transcription;1.20208928868316e-08!GO:0042254;ribosome biogenesis and assembly;1.2596825378011e-08!GO:0006417;regulation of translation;2.40598223504455e-08!GO:0006606;protein import into nucleus;2.42856181041342e-08!GO:0051170;nuclear import;2.65229937263342e-08!GO:0009892;negative regulation of metabolic process;3.27335245465939e-08!GO:0006164;purine nucleotide biosynthetic process;3.6370955434879e-08!GO:0005643;nuclear pore;3.7319838939771e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.80314603902374e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.24228051058723e-08!GO:0009260;ribonucleotide biosynthetic process;5.08367312480076e-08!GO:0051028;mRNA transport;5.22842445934561e-08!GO:0015986;ATP synthesis coupled proton transport;5.54176600350529e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.54176600350529e-08!GO:0006355;regulation of transcription, DNA-dependent;5.67847497554634e-08!GO:0016881;acid-amino acid ligase activity;5.7176302935988e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.72970593839722e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.00663574527557e-08!GO:0009259;ribonucleotide metabolic process;8.30490505283915e-08!GO:0003924;GTPase activity;9.38288622584686e-08!GO:0044427;chromosomal part;1.09124183505134e-07!GO:0006163;purine nucleotide metabolic process;1.15426247936907e-07!GO:0043065;positive regulation of apoptosis;1.32215263129329e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.5063657152943e-07!GO:0019899;enzyme binding;1.51008140421231e-07!GO:0065002;intracellular protein transport across a membrane;2.00874599893032e-07!GO:0006917;induction of apoptosis;2.18059703089788e-07!GO:0043068;positive regulation of programmed cell death;2.22889612023805e-07!GO:0009150;purine ribonucleotide metabolic process;2.38204441490395e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.86489912668159e-07!GO:0006461;protein complex assembly;2.87564447799552e-07!GO:0006334;nucleosome assembly;2.90789769206691e-07!GO:0005761;mitochondrial ribosome;2.96117340308524e-07!GO:0000313;organellar ribosome;2.96117340308524e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.4107027085428e-07!GO:0009719;response to endogenous stimulus;3.68954473072189e-07!GO:0012502;induction of programmed cell death;3.68954473072189e-07!GO:0009889;regulation of biosynthetic process;3.85374946080618e-07!GO:0003714;transcription corepressor activity;4.38567843382937e-07!GO:0051186;cofactor metabolic process;4.54767146009446e-07!GO:0005525;GTP binding;5.08950465308319e-07!GO:0048518;positive regulation of biological process;5.50618681618464e-07!GO:0031326;regulation of cellular biosynthetic process;5.91260474542816e-07!GO:0031497;chromatin assembly;6.47897198046189e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.75020466321387e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.75020466321387e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.13467827482612e-07!GO:0005793;ER-Golgi intermediate compartment;7.8829754358171e-07!GO:0005773;vacuole;8.1213748818566e-07!GO:0006754;ATP biosynthetic process;8.23903616354571e-07!GO:0006753;nucleoside phosphate metabolic process;8.23903616354571e-07!GO:0043566;structure-specific DNA binding;8.31734166060432e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.66265351872031e-07!GO:0032446;protein modification by small protein conjugation;9.27277115126041e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.12326603078475e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.12326603078475e-06!GO:0005770;late endosome;1.35903356417429e-06!GO:0004298;threonine endopeptidase activity;1.586244964132e-06!GO:0005783;endoplasmic reticulum;1.63015461745625e-06!GO:0009056;catabolic process;1.67233159161595e-06!GO:0016567;protein ubiquitination;1.92663858402459e-06!GO:0045321;leukocyte activation;2.0556246436224e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.12702671260401e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.17699955344062e-06!GO:0016072;rRNA metabolic process;2.19607064900701e-06!GO:0009060;aerobic respiration;2.28250059652433e-06!GO:0046930;pore complex;2.50622687538716e-06!GO:0006364;rRNA processing;2.5898589313863e-06!GO:0006732;coenzyme metabolic process;2.89603784122101e-06!GO:0000245;spliceosome assembly;3.30273662386638e-06!GO:0032561;guanyl ribonucleotide binding;3.45761474948745e-06!GO:0019001;guanyl nucleotide binding;3.45761474948745e-06!GO:0050790;regulation of catalytic activity;3.73840233323268e-06!GO:0016787;hydrolase activity;3.73840233323268e-06!GO:0003677;DNA binding;3.89948824529921e-06!GO:0008270;zinc ion binding;4.35256066003517e-06!GO:0046649;lymphocyte activation;4.94085468019066e-06!GO:0006955;immune response;5.40291278612711e-06!GO:0007264;small GTPase mediated signal transduction;5.46631622381497e-06!GO:0045259;proton-transporting ATP synthase complex;5.61819020033432e-06!GO:0009199;ribonucleoside triphosphate metabolic process;6.01172025695162e-06!GO:0051168;nuclear export;6.14956107155669e-06!GO:0003697;single-stranded DNA binding;6.60488417059424e-06!GO:0030097;hemopoiesis;6.91552901396369e-06!GO:0044440;endosomal part;7.41775922025046e-06!GO:0010008;endosome membrane;7.41775922025046e-06!GO:0009141;nucleoside triphosphate metabolic process;8.69177086177089e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.72641552060809e-06!GO:0000323;lytic vacuole;8.89096095638879e-06!GO:0005764;lysosome;8.89096095638879e-06!GO:0006260;DNA replication;9.41227121143729e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.59202109907766e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.59202109907766e-06!GO:0016197;endosome transport;1.0408865867942e-05!GO:0009967;positive regulation of signal transduction;1.18847788203223e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.31132438044372e-05!GO:0046034;ATP metabolic process;1.36471720105424e-05!GO:0048468;cell development;1.36995324537563e-05!GO:0045333;cellular respiration;1.61841689963648e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.71429692920882e-05!GO:0009607;response to biotic stimulus;1.89461993715489e-05!GO:0006613;cotranslational protein targeting to membrane;2.13038686098499e-05!GO:0016363;nuclear matrix;2.1810072550644e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.18841814232091e-05!GO:0001775;cell activation;2.50450566698664e-05!GO:0051427;hormone receptor binding;2.50450566698664e-05!GO:0003724;RNA helicase activity;2.58494740502724e-05!GO:0030099;myeloid cell differentiation;2.74732869677239e-05!GO:0000151;ubiquitin ligase complex;2.79665342147457e-05!GO:0051188;cofactor biosynthetic process;3.02959192335615e-05!GO:0044432;endoplasmic reticulum part;3.08721902918083e-05!GO:0000278;mitotic cell cycle;3.48747070581507e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.60096093283188e-05!GO:0042110;T cell activation;3.6176306556232e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.81045149444769e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.84884473469276e-05!GO:0048475;coated membrane;4.07470605492503e-05!GO:0030117;membrane coat;4.07470605492503e-05!GO:0006401;RNA catabolic process;4.25630995169124e-05!GO:0006402;mRNA catabolic process;4.83650766368166e-05!GO:0035257;nuclear hormone receptor binding;4.83650766368166e-05!GO:0007050;cell cycle arrest;5.39227634803251e-05!GO:0030120;vesicle coat;5.39417513492778e-05!GO:0030662;coated vesicle membrane;5.39417513492778e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.41732036783282e-05!GO:0015399;primary active transmembrane transporter activity;5.41732036783282e-05!GO:0008047;enzyme activator activity;5.53989732520196e-05!GO:0009055;electron carrier activity;6.62628968652689e-05!GO:0002520;immune system development;6.70206738808179e-05!GO:0003729;mRNA binding;7.61085498363061e-05!GO:0006399;tRNA metabolic process;7.74073167773462e-05!GO:0005667;transcription factor complex;7.74073167773462e-05!GO:0009108;coenzyme biosynthetic process;7.94300717876706e-05!GO:0004674;protein serine/threonine kinase activity;8.17696224777733e-05!GO:0016779;nucleotidyltransferase activity;8.25215301506544e-05!GO:0016740;transferase activity;8.74965760603276e-05!GO:0005813;centrosome;9.67313599572318e-05!GO:0060090;molecular adaptor activity;0.000104191460948712!GO:0008654;phospholipid biosynthetic process;0.000106891668796694!GO:0008234;cysteine-type peptidase activity;0.000109808257814516!GO:0009966;regulation of signal transduction;0.00014981922845943!GO:0006752;group transfer coenzyme metabolic process;0.000150485341936099!GO:0006099;tricarboxylic acid cycle;0.000161129747006277!GO:0046356;acetyl-CoA catabolic process;0.000161129747006277!GO:0009117;nucleotide metabolic process;0.000164055337822394!GO:0005769;early endosome;0.000167515671227087!GO:0051789;response to protein stimulus;0.000190166887368328!GO:0006986;response to unfolded protein;0.000190166887368328!GO:0007005;mitochondrion organization and biogenesis;0.000190942230091679!GO:0031252;leading edge;0.000191854416496666!GO:0031982;vesicle;0.000207318238001258!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000207318238001258!GO:0048471;perinuclear region of cytoplasm;0.000223627037222031!GO:0008632;apoptotic program;0.000233735161663692!GO:0016044;membrane organization and biogenesis;0.000261059084597692!GO:0048534;hemopoietic or lymphoid organ development;0.000295700208393311!GO:0030218;erythrocyte differentiation;0.000298304023007454!GO:0030695;GTPase regulator activity;0.000329150128277312!GO:0005815;microtubule organizing center;0.000329150128277312!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000339278096909718!GO:0006612;protein targeting to membrane;0.000348891290082248!GO:0005789;endoplasmic reticulum membrane;0.000350926745194372!GO:0043623;cellular protein complex assembly;0.000361919727459515!GO:0045637;regulation of myeloid cell differentiation;0.000368751198676309!GO:0046914;transition metal ion binding;0.000370018124988632!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000395407179241094!GO:0006352;transcription initiation;0.000405643855394842!GO:0008186;RNA-dependent ATPase activity;0.000440796225917685!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000464705397763287!GO:0004812;aminoacyl-tRNA ligase activity;0.000464705397763287!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000464705397763287!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000501330797164988!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00052837336926757!GO:0000786;nucleosome;0.000530037267833839!GO:0005096;GTPase activator activity;0.000549031920712475!GO:0043549;regulation of kinase activity;0.000603449913810137!GO:0006084;acetyl-CoA metabolic process;0.000611109514223139!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000617715789650728!GO:0009893;positive regulation of metabolic process;0.000633758762725923!GO:0031410;cytoplasmic vesicle;0.00063973158322233!GO:0005774;vacuolar membrane;0.000649662909132418!GO:0043038;amino acid activation;0.00068510393810539!GO:0006418;tRNA aminoacylation for protein translation;0.00068510393810539!GO:0043039;tRNA aminoacylation;0.00068510393810539!GO:0006261;DNA-dependent DNA replication;0.000706691568569465!GO:0007265;Ras protein signal transduction;0.000742060000573247!GO:0019221;cytokine and chemokine mediated signaling pathway;0.000743678605599131!GO:0051338;regulation of transferase activity;0.000746653461578475!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000765187417842816!GO:0045859;regulation of protein kinase activity;0.000804852066083776!GO:0043021;ribonucleoprotein binding;0.000827491050578635!GO:0003690;double-stranded DNA binding;0.00086002933315655!GO:0005057;receptor signaling protein activity;0.000881281932426959!GO:0005070;SH3/SH2 adaptor activity;0.00088863361791829!GO:0042802;identical protein binding;0.000895435535589445!GO:0022415;viral reproductive process;0.000902915801960245!GO:0043492;ATPase activity, coupled to movement of substances;0.000972205769549191!GO:0031988;membrane-bound vesicle;0.00101539186672246!GO:0019843;rRNA binding;0.00101977654045737!GO:0046983;protein dimerization activity;0.00103509265096817!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00106941187092237!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00111613894223471!GO:0051251;positive regulation of lymphocyte activation;0.00111613894223471!GO:0009109;coenzyme catabolic process;0.00114217177117609!GO:0004004;ATP-dependent RNA helicase activity;0.00121375649489607!GO:0006818;hydrogen transport;0.0013415841077115!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00134758161738189!GO:0051090;regulation of transcription factor activity;0.0013627300413201!GO:0003725;double-stranded RNA binding;0.00139955122428033!GO:0001819;positive regulation of cytokine production;0.00155188717530974!GO:0015992;proton transport;0.0015576389528337!GO:0005885;Arp2/3 protein complex;0.00157428686391197!GO:0051187;cofactor catabolic process;0.0015834188418118!GO:0051329;interphase of mitotic cell cycle;0.00159367168093147!GO:0002521;leukocyte differentiation;0.00159942494245994!GO:0045941;positive regulation of transcription;0.00162153190572894!GO:0005083;small GTPase regulator activity;0.00182641744002391!GO:0006405;RNA export from nucleus;0.0018936089299234!GO:0044437;vacuolar part;0.00191028087222632!GO:0030384;phosphoinositide metabolic process;0.00193326165610249!GO:0051336;regulation of hydrolase activity;0.0019518740879917!GO:0031902;late endosome membrane;0.00198138170592833!GO:0015630;microtubule cytoskeleton;0.00199537671465155!GO:0016023;cytoplasmic membrane-bound vesicle;0.00202336498649585!GO:0009165;nucleotide biosynthetic process;0.00205324172768157!GO:0046822;regulation of nucleocytoplasmic transport;0.00205324172768157!GO:0005765;lysosomal membrane;0.00229174175705055!GO:0046966;thyroid hormone receptor binding;0.00232350617919214!GO:0033673;negative regulation of kinase activity;0.00236165607388475!GO:0006469;negative regulation of protein kinase activity;0.00236165607388475!GO:0051059;NF-kappaB binding;0.00237157979793248!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00239729834384534!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00239729834384534!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00239729834384534!GO:0002757;immune response-activating signal transduction;0.00245757489225933!GO:0019783;small conjugating protein-specific protease activity;0.00247291357811655!GO:0007259;JAK-STAT cascade;0.00251890976484165!GO:0031072;heat shock protein binding;0.0025834104576546!GO:0002764;immune response-regulating signal transduction;0.00262517806662887!GO:0048500;signal recognition particle;0.00281083378837715!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00308396970687542!GO:0043433;negative regulation of transcription factor activity;0.00310910674994533!GO:0006891;intra-Golgi vesicle-mediated transport;0.00321154839466303!GO:0022890;inorganic cation transmembrane transporter activity;0.00336505833802753!GO:0015631;tubulin binding;0.00338207067682521!GO:0046467;membrane lipid biosynthetic process;0.00338934422997086!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00357298412784523!GO:0006310;DNA recombination;0.00371485432506016!GO:0033116;ER-Golgi intermediate compartment membrane;0.00373807989629293!GO:0004843;ubiquitin-specific protease activity;0.00375372940463546!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00383625577132361!GO:0005762;mitochondrial large ribosomal subunit;0.00408528931773394!GO:0000315;organellar large ribosomal subunit;0.00408528931773394!GO:0045893;positive regulation of transcription, DNA-dependent;0.00408579272539382!GO:0006897;endocytosis;0.00409078564929346!GO:0010324;membrane invagination;0.00409078564929346!GO:0051707;response to other organism;0.00411841658157133!GO:0001726;ruffle;0.00420692312267728!GO:0030036;actin cytoskeleton organization and biogenesis;0.00433731480118227!GO:0016251;general RNA polymerase II transcription factor activity;0.00436513993233788!GO:0031325;positive regulation of cellular metabolic process;0.0044043341442753!GO:0046519;sphingoid metabolic process;0.0044043341442753!GO:0032940;secretion by cell;0.00448046503592882!GO:0022403;cell cycle phase;0.00448046503592882!GO:0046474;glycerophospholipid biosynthetic process;0.00456585170572926!GO:0006414;translational elongation;0.00458079430143014!GO:0006611;protein export from nucleus;0.00465063594108358!GO:0006650;glycerophospholipid metabolic process;0.00471719185533814!GO:0051348;negative regulation of transferase activity;0.00471719185533814!GO:0006672;ceramide metabolic process;0.00479406612546708!GO:0051252;regulation of RNA metabolic process;0.00480350290751057!GO:0045646;regulation of erythrocyte differentiation;0.00480384064565913!GO:0030521;androgen receptor signaling pathway;0.00488187361809469!GO:0044431;Golgi apparatus part;0.00489999239868292!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00493613651166707!GO:0005637;nuclear inner membrane;0.00495155529177385!GO:0051087;chaperone binding;0.00499147043967573!GO:0030968;unfolded protein response;0.00499147043967573!GO:0051325;interphase;0.00513445673699284!GO:0008139;nuclear localization sequence binding;0.00549752781547687!GO:0043681;protein import into mitochondrion;0.00563691409167573!GO:0051223;regulation of protein transport;0.00564814408342076!GO:0006607;NLS-bearing substrate import into nucleus;0.00573484373968115!GO:0030518;steroid hormone receptor signaling pathway;0.00576275725066553!GO:0005798;Golgi-associated vesicle;0.0058258420039665!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00591191959408938!GO:0001816;cytokine production;0.00604338833498853!GO:0001772;immunological synapse;0.00614155171341348!GO:0004221;ubiquitin thiolesterase activity;0.00618667020368252!GO:0005684;U2-dependent spliceosome;0.00639650192781972!GO:0031625;ubiquitin protein ligase binding;0.00650675023362487!GO:0003684;damaged DNA binding;0.00650675023362487!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00661332106307002!GO:0045047;protein targeting to ER;0.00661332106307002!GO:0030658;transport vesicle membrane;0.00661332106307002!GO:0006468;protein amino acid phosphorylation;0.0070182357570221!GO:0031901;early endosome membrane;0.00720017770294932!GO:0000082;G1/S transition of mitotic cell cycle;0.00723670888577175!GO:0019079;viral genome replication;0.00740139916596215!GO:0006984;ER-nuclear signaling pathway;0.00747181013143973!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00758372023282036!GO:0046489;phosphoinositide biosynthetic process;0.00758417692306873!GO:0005741;mitochondrial outer membrane;0.00760835587154887!GO:0003899;DNA-directed RNA polymerase activity;0.00766975860465478!GO:0048487;beta-tubulin binding;0.00775253739573345!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00786150321053391!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00786150321053391!GO:0007034;vacuolar transport;0.00786150321053391!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00797579283621515!GO:0018193;peptidyl-amino acid modification;0.0080853317070859!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00823655219046534!GO:0030118;clathrin coat;0.00845967134935402!GO:0005869;dynactin complex;0.00859989460258171!GO:0001817;regulation of cytokine production;0.00866104351700131!GO:0004527;exonuclease activity;0.00875201395084711!GO:0008312;7S RNA binding;0.00880929408177878!GO:0006383;transcription from RNA polymerase III promoter;0.00882368807016686!GO:0043488;regulation of mRNA stability;0.00886184949171399!GO:0043487;regulation of RNA stability;0.00886184949171399!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00922554105470585!GO:0042113;B cell activation;0.0093626695047437!GO:0030433;ER-associated protein catabolic process;0.00954742613878012!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00954742613878012!GO:0006643;membrane lipid metabolic process;0.00966262111909087!GO:0016301;kinase activity;0.00983587355235314!GO:0043281;regulation of caspase activity;0.0102974632370428!GO:0006626;protein targeting to mitochondrion;0.0105608106296633!GO:0000314;organellar small ribosomal subunit;0.010599059508608!GO:0005763;mitochondrial small ribosomal subunit;0.010599059508608!GO:0051092;activation of NF-kappaB transcription factor;0.0109694935790914!GO:0006919;caspase activation;0.0112271438514603!GO:0043022;ribosome binding;0.0115286440498956!GO:0043087;regulation of GTPase activity;0.011583332923877!GO:0002262;myeloid cell homeostasis;0.011978038190184!GO:0051052;regulation of DNA metabolic process;0.0121563433686898!GO:0016272;prefoldin complex;0.0122053656902577!GO:0001562;response to protozoan;0.0123600467210567!GO:0031968;organelle outer membrane;0.0128856059965737!GO:0050900;leukocyte migration;0.0129553751164322!GO:0005048;signal sequence binding;0.0129553751164322!GO:0045045;secretory pathway;0.0132775233285771!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0136137677606932!GO:0003711;transcription elongation regulator activity;0.0140258343071144!GO:0016859;cis-trans isomerase activity;0.0141132099360508!GO:0005669;transcription factor TFIID complex;0.0146288667532025!GO:0019867;outer membrane;0.014660242665992!GO:0050870;positive regulation of T cell activation;0.0147586151779405!GO:0016311;dephosphorylation;0.0148402888336821!GO:0045454;cell redox homeostasis;0.0150138004297519!GO:0006376;mRNA splice site selection;0.0155922829374821!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0155922829374821!GO:0030522;intracellular receptor-mediated signaling pathway;0.0158568279662527!GO:0008287;protein serine/threonine phosphatase complex;0.0160081353778488!GO:0016584;nucleosome positioning;0.0161327785178825!GO:0030660;Golgi-associated vesicle membrane;0.0163405695410032!GO:0019210;kinase inhibitor activity;0.016356384467965!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0163610023817574!GO:0005099;Ras GTPase activator activity;0.0164223682477013!GO:0043621;protein self-association;0.0166179538238242!GO:0030258;lipid modification;0.0176100628903814!GO:0008017;microtubule binding;0.0176974834512187!GO:0050851;antigen receptor-mediated signaling pathway;0.0177104581112817!GO:0050865;regulation of cell activation;0.0177104581112817!GO:0008097;5S rRNA binding;0.0177341298708404!GO:0030217;T cell differentiation;0.0180084070188816!GO:0051920;peroxiredoxin activity;0.0181424421579053!GO:0019058;viral infectious cycle;0.0181424421579053!GO:0033157;regulation of intracellular protein transport;0.0185981020775997!GO:0042306;regulation of protein import into nucleus;0.0185981020775997!GO:0017091;AU-rich element binding;0.0187624061211563!GO:0050779;RNA destabilization;0.0187624061211563!GO:0000289;poly(A) tail shortening;0.0187624061211563!GO:0030867;rough endoplasmic reticulum membrane;0.0187624061211563!GO:0043280;positive regulation of caspase activity;0.0187624061211563!GO:0030100;regulation of endocytosis;0.0194509408795017!GO:0004860;protein kinase inhibitor activity;0.0194684557895089!GO:0051098;regulation of binding;0.019792034000864!GO:0009116;nucleoside metabolic process;0.0200328634724002!GO:0007041;lysosomal transport;0.0201537469133312!GO:0030041;actin filament polymerization;0.0209477909026005!GO:0051249;regulation of lymphocyte activation;0.0215082262363242!GO:0030098;lymphocyte differentiation;0.0216651434352776!GO:0044452;nucleolar part;0.0218005435572781!GO:0008320;protein transmembrane transporter activity;0.0218512004101712!GO:0051101;regulation of DNA binding;0.0218905587662944!GO:0030127;COPII vesicle coat;0.0222406043278488!GO:0012507;ER to Golgi transport vesicle membrane;0.0222406043278488!GO:0022411;cellular component disassembly;0.0227262464528534!GO:0050871;positive regulation of B cell activation;0.0227262464528534!GO:0048872;homeostasis of number of cells;0.0231586928371652!GO:0030029;actin filament-based process;0.0231762569798615!GO:0048146;positive regulation of fibroblast proliferation;0.0233422406212222!GO:0004197;cysteine-type endopeptidase activity;0.0235540137647906!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0238317199658041!GO:0000118;histone deacetylase complex;0.0245488155611799!GO:0008383;manganese superoxide dismutase activity;0.0247816525796282!GO:0001315;age-dependent response to reactive oxygen species;0.0247816525796282!GO:0003682;chromatin binding;0.0249567031846438!GO:0008637;apoptotic mitochondrial changes;0.0253475104529706!GO:0000049;tRNA binding;0.0259404251511592!GO:0003702;RNA polymerase II transcription factor activity;0.0261713071834346!GO:0016790;thiolester hydrolase activity;0.027270324257387!GO:0043407;negative regulation of MAP kinase activity;0.0272898777675089!GO:0003678;DNA helicase activity;0.0272941478567429!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0277796969201363!GO:0022884;macromolecule transmembrane transporter activity;0.0281078559735687!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0281078559735687!GO:0008624;induction of apoptosis by extracellular signals;0.0284685535927627!GO:0006354;RNA elongation;0.0284685535927627!GO:0035258;steroid hormone receptor binding;0.0288532305540283!GO:0045792;negative regulation of cell size;0.0291945923434035!GO:0047485;protein N-terminus binding;0.0294615761340472!GO:0033367;protein localization in mast cell secretory granule;0.0294615761340472!GO:0033365;protein localization in organelle;0.0294615761340472!GO:0033371;T cell secretory granule organization and biogenesis;0.0294615761340472!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0294615761340472!GO:0033375;protease localization in T cell secretory granule;0.0294615761340472!GO:0042629;mast cell granule;0.0294615761340472!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0294615761340472!GO:0033364;mast cell secretory granule organization and biogenesis;0.0294615761340472!GO:0033380;granzyme B localization in T cell secretory granule;0.0294615761340472!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0294615761340472!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0294615761340472!GO:0033368;protease localization in mast cell secretory granule;0.0294615761340472!GO:0033366;protein localization in secretory granule;0.0294615761340472!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0294615761340472!GO:0033374;protein localization in T cell secretory granule;0.0294615761340472!GO:0016605;PML body;0.0296975035118791!GO:0050671;positive regulation of lymphocyte proliferation;0.0296975035118791!GO:0032946;positive regulation of mononuclear cell proliferation;0.0296975035118791!GO:0000087;M phase of mitotic cell cycle;0.0304379392556407!GO:0019904;protein domain specific binding;0.0306359168472876!GO:0007006;mitochondrial membrane organization and biogenesis;0.0314368332429159!GO:0006338;chromatin remodeling;0.0315817185982095!GO:0048144;fibroblast proliferation;0.032008174457352!GO:0048145;regulation of fibroblast proliferation;0.032008174457352!GO:0003746;translation elongation factor activity;0.032008174457352!GO:0051091;positive regulation of transcription factor activity;0.032008174457352!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.032008174457352!GO:0015002;heme-copper terminal oxidase activity;0.032008174457352!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.032008174457352!GO:0004129;cytochrome-c oxidase activity;0.032008174457352!GO:0008168;methyltransferase activity;0.0323113997432636!GO:0000209;protein polyubiquitination;0.0326294217181316!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0326681787197992!GO:0001776;leukocyte homeostasis;0.0330035624198554!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0330244601476968!GO:0030134;ER to Golgi transport vesicle;0.0330808922821665!GO:0005149;interleukin-1 receptor binding;0.0331240366856784!GO:0019220;regulation of phosphate metabolic process;0.0332151486349896!GO:0051174;regulation of phosphorus metabolic process;0.0332151486349896!GO:0030119;AP-type membrane coat adaptor complex;0.0336975035572654!GO:0045746;negative regulation of Notch signaling pathway;0.0337834272456903!GO:0045638;negative regulation of myeloid cell differentiation;0.0338407332871965!GO:0051301;cell division;0.0342390660115984!GO:0006595;polyamine metabolic process;0.0344451203153866!GO:0005657;replication fork;0.0344472837171311!GO:0030308;negative regulation of cell growth;0.0346447578829372!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.035419609317193!GO:0032508;DNA duplex unwinding;0.0356014378401197!GO:0032392;DNA geometric change;0.0356014378401197!GO:0006661;phosphatidylinositol biosynthetic process;0.0358745765858286!GO:0008276;protein methyltransferase activity;0.0358766841783424!GO:0000303;response to superoxide;0.036380197649496!GO:0007067;mitosis;0.0363878185824933!GO:0042832;defense response to protozoan;0.0368492145477481!GO:0000139;Golgi membrane;0.0371697673575332!GO:0006301;postreplication repair;0.0373043853778179!GO:0050755;chemokine metabolic process;0.0373668350761032!GO:0042033;chemokine biosynthetic process;0.0373668350761032!GO:0032602;chemokine production;0.0373668350761032!GO:0050811;GABA receptor binding;0.0376997969011197!GO:0046854;phosphoinositide phosphorylation;0.0380554130727944!GO:0005791;rough endoplasmic reticulum;0.0388611687180425!GO:0030663;COPI coated vesicle membrane;0.0394805855027886!GO:0030126;COPI vesicle coat;0.0394805855027886!GO:0006302;double-strand break repair;0.0394805855027886!GO:0019901;protein kinase binding;0.0396488122425869!GO:0030131;clathrin adaptor complex;0.0398534083784947!GO:0042990;regulation of transcription factor import into nucleus;0.0398534083784947!GO:0042991;transcription factor import into nucleus;0.0398534083784947!GO:0001516;prostaglandin biosynthetic process;0.0402549541056159!GO:0046457;prostanoid biosynthetic process;0.0402549541056159!GO:0016741;transferase activity, transferring one-carbon groups;0.0402549541056159!GO:0032318;regulation of Ras GTPase activity;0.0404336426641087!GO:0016566;specific transcriptional repressor activity;0.0407524341401623!GO:0000119;mediator complex;0.0407904498068844!GO:0006406;mRNA export from nucleus;0.0416026011762074!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0420699698484875!GO:0008629;induction of apoptosis by intracellular signals;0.0426879380972301!GO:0002274;myeloid leukocyte activation;0.0427003097843545!GO:0004576;oligosaccharyl transferase activity;0.0427003097843545!GO:0016279;protein-lysine N-methyltransferase activity;0.0427763124777074!GO:0018024;histone-lysine N-methyltransferase activity;0.0427763124777074!GO:0016278;lysine N-methyltransferase activity;0.0427763124777074!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0430924437927901!GO:0015980;energy derivation by oxidation of organic compounds;0.046856440778859!GO:0005832;chaperonin-containing T-complex;0.0476571071011421!GO:0000738;DNA catabolic process, exonucleolytic;0.047810760652619!GO:0033549;MAP kinase phosphatase activity;0.0482398252970042!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0482398252970042!GO:0002440;production of molecular mediator of immune response;0.0485884682543641!GO:0000287;magnesium ion binding;0.0489074511177335!GO:0051540;metal cluster binding;0.0492727974598699!GO:0051536;iron-sulfur cluster binding;0.0492727974598699
|sample_id=11625
|sample_id=11625
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=NFKB1_REL_RELA:3.49165616177;PAX3,7:3.34469960627;CREB1:2.81906102002;ATF4:2.81665042692;RUNX1..3:2.76665306001;PAX2:2.75137371255;ATF5_CREB3:2.58296618572;RORA:2.2722722791;FOXN1:2.18328780784;TGIF1:2.17296603564;DMAP1_NCOR{1,2}_SMARC:2.15560826902;ELF1,2,4:2.14572103122;ETS1,2:2.11221567456;SPI1:2.01685703535;JUN:2.00466441719;NFATC1..3:1.99093247999;SPIB:1.95986295872;FOS_FOS{B,L1}_JUN{B,D}:1.92866781929;NFE2:1.88296239433;FOSL2:1.85091555394;FOX{D1,D2}:1.82145536057;NANOG{mouse}:1.81807959481;IRF1,2:1.78002787728;HIF1A:1.72881164524;BACH2:1.72518185725;NFIL3:1.7216495131;ATF2:1.50907437316;TLX2:1.50575586197;IRF7:1.40489207137;NKX2-1,4:1.38643233409;STAT1,3:1.3475456465;TBX4,5:1.31209365948;STAT2,4,6:1.31093456241;GATA6:1.28816136801;HLF:1.22801660751;HMX1:1.17781003352;MYB:1.16588463726;RFX2..5_RFXANK_RFXAP:1.15174894266;ATF6:1.15053661588;BPTF:1.10314914179;FOXP3:1.06384510416;POU2F1..3:0.943285021988;NFE2L1:0.902920835499;XBP1:0.854728244075;FOXO1,3,4:0.84535645322;RXRA_VDR{dimer}:0.829630461141;BREu{core}:0.795206422142;CEBPA,B_DDIT3:0.791637491906;PAX6:0.745258766837;HSF1,2:0.732547416578;MAFB:0.726896074185;PAX8:0.673322778604;SREBF1,2:0.634415558193;NFE2L2:0.623302772104;PDX1:0.554060180149;FOX{F1,F2,J1}:0.528256354908;TBP:0.497270407865;RBPJ:0.47432762822;EGR1..3:0.442574875329;SOX2:0.435303571041;NANOG:0.396740150035;HBP1_HMGB_SSRP1_UBTF:0.302595791788;MEF2{A,B,C,D}:0.299420424042;CRX:0.29258661173;SMAD1..7,9:0.185072468566;ESR1:0.183003526826;RFX1:0.16641628531;EP300:0.143753058202;GLI1..3:0.126441266798;HMGA1,2:0.102142430331;MYOD1:0.0868258567633;CDX1,2,4:0.0105248013416;OCT4_SOX2{dimer}:0.00680064697922;PRRX1,2:-0.0672617407575;AHR_ARNT_ARNT2:-0.149852794751;POU5F1:-0.173545516196;ELK1,4_GABP{A,B1}:-0.181639300743;FOX{I1,J2}:-0.184680356275;HES1:-0.189309971875;E2F1..5:-0.19689142125;CUX2:-0.210361593802;PAX4:-0.21834674568;DBP:-0.234366540763;STAT5{A,B}:-0.261001643105;NHLH1,2:-0.265910149556;ZEB1:-0.289831303523;PBX1:-0.293485016236;MED-1{core}:-0.293543908498;FOXP1:-0.29833478636;NFY{A,B,C}:-0.336276389606;RXR{A,B,G}:-0.341497771736;SRF:-0.357062468886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.363151603538;MZF1:-0.363693696937;IKZF2:-0.396781787382;TFAP2{A,C}:-0.407412379545;MYFfamily:-0.413448847604;PATZ1:-0.427783009333;LEF1_TCF7_TCF7L1,2:-0.433150381986;TFDP1:-0.435413770534;TFAP2B:-0.462048695273;ZNF148:-0.494399680203;REST:-0.527036584732;SOX17:-0.535280294041;ZFP161:-0.542641428546;ZNF238:-0.546947080808;MTE{core}:-0.571061023604;NR5A1,2:-0.572729626167;ALX1:-0.59643407118;SOX{8,9,10}:-0.605310181938;VSX1,2:-0.651241995776;ZBTB16:-0.654321922465;HOXA9_MEIS1:-0.672905552637;EN1,2:-0.728644633336;HNF1A:-0.728727998639;YY1:-0.743436979902;HNF4A_NR2F1,2:-0.75459561026;MAZ:-0.780681218848;SP1:-0.826078931664;PITX1..3:-0.857371975813;PAX5:-0.869802538696;GCM1,2:-0.891601158341;GZF1:-0.892102420364;TAL1_TCF{3,4,12}:-0.896885071242;HIC1:-0.898661271577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.899461129746;FOXA2:-0.921707575955;FOXL1:-0.922008037494;SNAI1..3:-0.944907203393;TFCP2:-0.962865201187;T:-0.965743937949;ZNF384:-0.966323803754;bHLH_family:-1.00683632569;NKX6-1,2:-1.0148297261;AR:-1.01903570145;LMO2:-1.0445528443;EBF1:-1.04541785169;TFAP4:-1.04931068497;SOX5:-1.07611251212;RREB1:-1.09412518794;AIRE:-1.11374600644;NRF1:-1.11375154998;NKX2-3_NKX2-5:-1.12268118642;ZBTB6:-1.14003538387;NR6A1:-1.15050216172;MTF1:-1.15539354511;MYBL2:-1.19035013816;ESRRA:-1.20838947721;TLX1..3_NFIC{dimer}:-1.21302961966;ALX4:-1.22480495873;XCPE1{core}:-1.24572360812;GTF2I:-1.25435686519;HOX{A6,A7,B6,B7}:-1.26610069748;ZNF423:-1.27483857303;ADNP_IRX_SIX_ZHX:-1.31807173342;POU3F1..4:-1.32089240184;NKX3-1:-1.32966692266;GFI1:-1.33379345346;FOXQ1:-1.35988452021;GTF2A1,2:-1.4066379937;HOX{A5,B5}:-1.42955265485;ZNF143:-1.43238421041;PRDM1:-1.44643090243;GATA4:-1.47248455439;NR1H4:-1.47594259259;TEAD1:-1.48620246414;NFIX:-1.50159775874;PPARG:-1.53773966936;TP53:-1.55323922612;POU6F1:-1.57692433898;HAND1,2:-1.58007683472;ZIC1..3:-1.58189836732;CDC5L:-1.62445730582;FOXM1:-1.63070153157;EVI1:-1.64545990056;LHX3,4:-1.65033562787;NKX2-2,8:-1.72228347239;HOX{A4,D4}:-1.81094382754;TEF:-1.93092728007;IKZF1:-1.93098612306;GFI1B:-1.96404196734;ARID5B:-2.03811815614;PAX1,9:-2.03843470537;NR3C1:-2.21048510634;UFEwm:-2.40079665738;FOXD3:-2.43349292034;SPZ1:-2.47064153068;KLF4:-2.4948016436;TOPORS:-2.54316794039;POU1F1:-2.57563564231;ONECUT1,2:-2.59755040827;NKX3-2:-2.61779291549
|top_motifs=NFKB1_REL_RELA:3.49165616177;PAX3,7:3.34469960627;CREB1:2.81906102002;ATF4:2.81665042692;RUNX1..3:2.76665306001;PAX2:2.75137371255;ATF5_CREB3:2.58296618572;RORA:2.2722722791;FOXN1:2.18328780784;TGIF1:2.17296603564;DMAP1_NCOR{1,2}_SMARC:2.15560826902;ELF1,2,4:2.14572103122;ETS1,2:2.11221567456;SPI1:2.01685703535;JUN:2.00466441719;NFATC1..3:1.99093247999;SPIB:1.95986295872;FOS_FOS{B,L1}_JUN{B,D}:1.92866781929;NFE2:1.88296239433;FOSL2:1.85091555394;FOX{D1,D2}:1.82145536057;NANOG{mouse}:1.81807959481;IRF1,2:1.78002787728;HIF1A:1.72881164524;BACH2:1.72518185725;NFIL3:1.7216495131;ATF2:1.50907437316;TLX2:1.50575586197;IRF7:1.40489207137;NKX2-1,4:1.38643233409;STAT1,3:1.3475456465;TBX4,5:1.31209365948;STAT2,4,6:1.31093456241;GATA6:1.28816136801;HLF:1.22801660751;HMX1:1.17781003352;MYB:1.16588463726;RFX2..5_RFXANK_RFXAP:1.15174894266;ATF6:1.15053661588;BPTF:1.10314914179;FOXP3:1.06384510416;POU2F1..3:0.943285021988;NFE2L1:0.902920835499;XBP1:0.854728244075;FOXO1,3,4:0.84535645322;RXRA_VDR{dimer}:0.829630461141;BREu{core}:0.795206422142;CEBPA,B_DDIT3:0.791637491906;PAX6:0.745258766837;HSF1,2:0.732547416578;MAFB:0.726896074185;PAX8:0.673322778604;SREBF1,2:0.634415558193;NFE2L2:0.623302772104;PDX1:0.554060180149;FOX{F1,F2,J1}:0.528256354908;TBP:0.497270407865;RBPJ:0.47432762822;EGR1..3:0.442574875329;SOX2:0.435303571041;NANOG:0.396740150035;HBP1_HMGB_SSRP1_UBTF:0.302595791788;MEF2{A,B,C,D}:0.299420424042;CRX:0.29258661173;SMAD1..7,9:0.185072468566;ESR1:0.183003526826;RFX1:0.16641628531;EP300:0.143753058202;GLI1..3:0.126441266798;HMGA1,2:0.102142430331;MYOD1:0.0868258567633;CDX1,2,4:0.0105248013416;OCT4_SOX2{dimer}:0.00680064697922;PRRX1,2:-0.0672617407575;AHR_ARNT_ARNT2:-0.149852794751;POU5F1:-0.173545516196;ELK1,4_GABP{A,B1}:-0.181639300743;FOX{I1,J2}:-0.184680356275;HES1:-0.189309971875;E2F1..5:-0.19689142125;CUX2:-0.210361593802;PAX4:-0.21834674568;DBP:-0.234366540763;STAT5{A,B}:-0.261001643105;NHLH1,2:-0.265910149556;ZEB1:-0.289831303523;PBX1:-0.293485016236;MED-1{core}:-0.293543908498;FOXP1:-0.29833478636;NFY{A,B,C}:-0.336276389606;RXR{A,B,G}:-0.341497771736;SRF:-0.357062468886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.363151603538;MZF1:-0.363693696937;IKZF2:-0.396781787382;TFAP2{A,C}:-0.407412379545;MYFfamily:-0.413448847604;PATZ1:-0.427783009333;LEF1_TCF7_TCF7L1,2:-0.433150381986;TFDP1:-0.435413770534;TFAP2B:-0.462048695273;ZNF148:-0.494399680203;REST:-0.527036584732;SOX17:-0.535280294041;ZFP161:-0.542641428546;ZNF238:-0.546947080808;MTE{core}:-0.571061023604;NR5A1,2:-0.572729626167;ALX1:-0.59643407118;SOX{8,9,10}:-0.605310181938;VSX1,2:-0.651241995776;ZBTB16:-0.654321922465;HOXA9_MEIS1:-0.672905552637;EN1,2:-0.728644633336;HNF1A:-0.728727998639;YY1:-0.743436979902;HNF4A_NR2F1,2:-0.75459561026;MAZ:-0.780681218848;SP1:-0.826078931664;PITX1..3:-0.857371975813;PAX5:-0.869802538696;GCM1,2:-0.891601158341;GZF1:-0.892102420364;TAL1_TCF{3,4,12}:-0.896885071242;HIC1:-0.898661271577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.899461129746;FOXA2:-0.921707575955;FOXL1:-0.922008037494;SNAI1..3:-0.944907203393;TFCP2:-0.962865201187;T:-0.965743937949;ZNF384:-0.966323803754;bHLH_family:-1.00683632569;NKX6-1,2:-1.0148297261;AR:-1.01903570145;LMO2:-1.0445528443;EBF1:-1.04541785169;TFAP4:-1.04931068497;SOX5:-1.07611251212;RREB1:-1.09412518794;AIRE:-1.11374600644;NRF1:-1.11375154998;NKX2-3_NKX2-5:-1.12268118642;ZBTB6:-1.14003538387;NR6A1:-1.15050216172;MTF1:-1.15539354511;MYBL2:-1.19035013816;ESRRA:-1.20838947721;TLX1..3_NFIC{dimer}:-1.21302961966;ALX4:-1.22480495873;XCPE1{core}:-1.24572360812;GTF2I:-1.25435686519;HOX{A6,A7,B6,B7}:-1.26610069748;ZNF423:-1.27483857303;ADNP_IRX_SIX_ZHX:-1.31807173342;POU3F1..4:-1.32089240184;NKX3-1:-1.32966692266;GFI1:-1.33379345346;FOXQ1:-1.35988452021;GTF2A1,2:-1.4066379937;HOX{A5,B5}:-1.42955265485;ZNF143:-1.43238421041;PRDM1:-1.44643090243;GATA4:-1.47248455439;NR1H4:-1.47594259259;TEAD1:-1.48620246414;NFIX:-1.50159775874;PPARG:-1.53773966936;TP53:-1.55323922612;POU6F1:-1.57692433898;HAND1,2:-1.58007683472;ZIC1..3:-1.58189836732;CDC5L:-1.62445730582;FOXM1:-1.63070153157;EVI1:-1.64545990056;LHX3,4:-1.65033562787;NKX2-2,8:-1.72228347239;HOX{A4,D4}:-1.81094382754;TEF:-1.93092728007;IKZF1:-1.93098612306;GFI1B:-1.96404196734;ARID5B:-2.03811815614;PAX1,9:-2.03843470537;NR3C1:-2.21048510634;UFEwm:-2.40079665738;FOXD3:-2.43349292034;SPZ1:-2.47064153068;KLF4:-2.4948016436;TOPORS:-2.54316794039;POU1F1:-2.57563564231;ONECUT1,2:-2.59755040827;NKX3-2:-2.61779291549
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11625-122B5;search_select_hide=table117:FF:11625-122B5
}}
}}

Latest revision as of 18:12, 4 June 2020

Name:CD34+ Progenitors, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12205
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typehematopoietic stem cell, CD34+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:c1
catalog number3H100-60-5
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005630
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12205 CAGE DRX008059 DRR008931
Accession ID Hg19

Library idBAMCTSS
CNhs12205 DRZ000356 DRZ001741
Accession ID Hg38

Library idBAMCTSS
CNhs12205 DRZ011706 DRZ013091
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.193
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
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C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.193
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.193
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12205

Jaspar motifP-value
MA0002.22.47049e-8
MA0003.10.779
MA0004.10.686
MA0006.10.263
MA0007.10.23
MA0009.10.149
MA0014.10.682
MA0017.10.992
MA0018.25.02871e-8
MA0019.10.652
MA0024.10.365
MA0025.11.24602e-5
MA0027.10.288
MA0028.10.449
MA0029.10.757
MA0030.10.0613
MA0031.10.0281
MA0035.20.126
MA0038.10.605
MA0039.20.517
MA0040.10.45
MA0041.10.0981
MA0042.10.169
MA0043.11.8446e-14
MA0046.10.216
MA0047.20.524
MA0048.10.927
MA0050.13.63388e-11
MA0051.16.03131e-7
MA0052.14.58402e-4
MA0055.10.928
MA0057.10.119
MA0058.10.309
MA0059.10.892
MA0060.10.0416
MA0061.11.32531e-47
MA0062.21.95534e-9
MA0065.20.39
MA0066.10.64
MA0067.13.60304e-8
MA0068.10.0225
MA0069.10.185
MA0070.10.416
MA0071.10.514
MA0072.10.307
MA0073.10.224
MA0074.10.362
MA0076.10.0676
MA0077.10.305
MA0078.10.432
MA0079.20.646
MA0080.25.70626e-13
MA0081.11.43404e-4
MA0083.10.517
MA0084.10.467
MA0087.10.934
MA0088.10.224
MA0090.10.0139
MA0091.10.371
MA0092.10.752
MA0093.10.692
MA0099.29.47244e-34
MA0100.10.0994
MA0101.11.04228e-46
MA0102.27.0999e-10
MA0103.10.0244
MA0104.20.217
MA0105.11.00664e-21
MA0106.10.0417
MA0107.11.32561e-51
MA0108.20.624
MA0111.10.798
MA0112.20.955
MA0113.10.382
MA0114.10.471
MA0115.10.248
MA0116.10.0482
MA0117.10.00111
MA0119.10.258
MA0122.10.538
MA0124.10.237
MA0125.10.231
MA0131.10.789
MA0135.10.486
MA0136.12.99114e-18
MA0137.20.0343
MA0138.20.0347
MA0139.10.513
MA0140.10.057
MA0141.10.792
MA0142.10.712
MA0143.10.798
MA0144.10.179
MA0145.10.164
MA0146.10.658
MA0147.10.481
MA0148.10.601
MA0149.10.861
MA0150.14.59935e-13
MA0152.10.239
MA0153.10.0106
MA0154.10.00325
MA0155.10.816
MA0156.13.48014e-18
MA0157.10.0736
MA0159.10.384
MA0160.10.121
MA0162.10.322
MA0163.10.00484
MA0164.10.955
MA0258.10.854
MA0259.10.881



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12205

Novel motifP-value
10.841
100.127
1000.173
1010.953
1020.951
1030.563
1040.434
1050.0978
1060.0123
1070.564
1080.232
1090.698
110.657
1100.936
1110.759
1120.946
1130.213
1140.908
1150.162
1160.213
1170.0384
1180.302
1190.434
120.347
1200.416
1210.4
1220.281
1230.696
1240.589
1250.959
1260.0668
1270.781
1280.389
1290.556
130.185
1300.8
1310.442
1320.0173
1330.34
1340.905
1350.938
1360.845
1370.0158
1380.73
1390.227
140.528
1400.589
1410.545
1420.17
1430.0133
1440.943
1450.713
1460.983
1470.15
1480.348
1490.302
150.302
1500.531
1510.785
1520.558
1530.895
1540.575
1550.285
1560.653
1570.679
1580.03
1590.0995
160.659
1600.337
1610.625
1620.00826
1630.417
1640.169
1650.42
1660.796
1670.328
1680.138
1690.255
170.915
180.558
190.0838
20.209
200.211
210.685
220.785
230.48
240.723
250.267
260.676
270.387
280.261
290.161
30.73
300.263
310.761
324.80792e-4
330.283
340.785
350.169
360.208
370.152
380.91
390.779
40.895
400.65
410.0111
420.519
430.129
440.397
450.879
460.833
470.899
480.805
490.396
50.477
500.687
510.685
520.707
530.591
540.915
550.523
560.776
570.561
580.217
590.751
60.718
600.215
610.369
620.229
630.536
640.983
650.874
660.336
670.89
680.433
690.0946
70.353
700.617
710.26
720.193
730.43
740.0632
750.276
760.178
770.135
780.409
790.128
80.353
800.0132
810.919
820.647
830.00226
840.0657
850.71
860.0511
870.216
880.606
890.306
90.436
900.807
910.998
920.949
930.35
940.208
950.0897
960.886
970.943
980.312
995.93318e-6



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12205


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000026 (human CD34-positive hematopoietic stem cell sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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