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{{f5samples
{{f5samples
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Line 35: Line 42:
|fonse_treatment_closure=
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|id=FF:12235-129G3
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Line 42: Line 61:
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Line 57: Line 79:
|rna_weight_ug=5.64921
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Line 69: Line 92:
|sample_ethnicity=
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.23055146942248e-211!GO:0005737;cytoplasm;3.91273731762599e-172!GO:0043226;organelle;2.92548858726553e-159!GO:0043229;intracellular organelle;8.08201051040527e-159!GO:0043231;intracellular membrane-bound organelle;2.46333848691356e-151!GO:0043227;membrane-bound organelle;4.00221341209164e-151!GO:0044444;cytoplasmic part;1.86349526157738e-112!GO:0044422;organelle part;1.04544745933757e-109!GO:0044446;intracellular organelle part;2.79658129441976e-108!GO:0005515;protein binding;4.31380028187021e-81!GO:0032991;macromolecular complex;9.35827232808081e-77!GO:0044238;primary metabolic process;1.05565175114176e-74!GO:0043170;macromolecule metabolic process;6.06282445803713e-72!GO:0044237;cellular metabolic process;1.65170208677537e-70!GO:0030529;ribonucleoprotein complex;4.41792210268921e-63!GO:0003723;RNA binding;1.4620897533492e-57!GO:0005634;nucleus;3.01037777161758e-56!GO:0019538;protein metabolic process;1.97905703711953e-53!GO:0043233;organelle lumen;4.78929796978023e-52!GO:0031974;membrane-enclosed lumen;4.78929796978023e-52!GO:0044428;nuclear part;5.90097291136532e-50!GO:0044267;cellular protein metabolic process;3.19330282600796e-46!GO:0044260;cellular macromolecule metabolic process;7.635500117927e-46!GO:0031090;organelle membrane;1.23979878842251e-45!GO:0033036;macromolecule localization;2.12887070168478e-45!GO:0015031;protein transport;2.05279072203713e-44!GO:0005739;mitochondrion;3.50043695637498e-44!GO:0008104;protein localization;9.44816007430609e-43!GO:0045184;establishment of protein localization;3.62742920197624e-42!GO:0006412;translation;1.09834353646422e-41!GO:0043234;protein complex;3.34493937242984e-40!GO:0016043;cellular component organization and biogenesis;7.35143940199571e-40!GO:0043283;biopolymer metabolic process;5.04771011194767e-39!GO:0005840;ribosome;5.75107421986181e-38!GO:0010467;gene expression;4.49233230204795e-34!GO:0006396;RNA processing;6.92997087072686e-34!GO:0005829;cytosol;1.10433856155266e-33!GO:0003735;structural constituent of ribosome;1.49804172921504e-33!GO:0031981;nuclear lumen;4.68729617397045e-32!GO:0044429;mitochondrial part;3.15280255393277e-31!GO:0031967;organelle envelope;5.05932291055073e-31!GO:0031975;envelope;1.13234443307707e-30!GO:0009059;macromolecule biosynthetic process;1.33185251970245e-30!GO:0033279;ribosomal subunit;2.27491988307e-30!GO:0065003;macromolecular complex assembly;2.66502975382777e-29!GO:0016071;mRNA metabolic process;3.12785593591076e-29!GO:0009058;biosynthetic process;3.78720413305224e-29!GO:0046907;intracellular transport;4.32805532868716e-29!GO:0008380;RNA splicing;4.08423026684559e-28!GO:0044249;cellular biosynthetic process;1.1523151241232e-27!GO:0022607;cellular component assembly;3.44581764254657e-27!GO:0006886;intracellular protein transport;5.50842932681624e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.35833088006029e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.4674736215195e-25!GO:0006397;mRNA processing;2.93970173627521e-25!GO:0043228;non-membrane-bound organelle;2.54316859120056e-24!GO:0043232;intracellular non-membrane-bound organelle;2.54316859120056e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.00280242288629e-23!GO:0044445;cytosolic part;5.41214538337458e-23!GO:0005740;mitochondrial envelope;1.06181265646984e-21!GO:0012505;endomembrane system;8.11444815190462e-21!GO:0006996;organelle organization and biogenesis;8.64834620941176e-21!GO:0031966;mitochondrial membrane;2.29974072507824e-20!GO:0005654;nucleoplasm;6.90199896581251e-20!GO:0005681;spliceosome;7.15079812747043e-20!GO:0019866;organelle inner membrane;4.05961105297034e-19!GO:0005794;Golgi apparatus;4.83889735286071e-19!GO:0051641;cellular localization;5.62983081654734e-19!GO:0051649;establishment of cellular localization;1.1301180188151e-18!GO:0006512;ubiquitin cycle;2.21411540465466e-18!GO:0005783;endoplasmic reticulum;3.37046844695323e-18!GO:0006119;oxidative phosphorylation;3.67908989230161e-18!GO:0022618;protein-RNA complex assembly;4.16318277038506e-18!GO:0005743;mitochondrial inner membrane;4.82310562123561e-18!GO:0008134;transcription factor binding;6.48559926679886e-18!GO:0006457;protein folding;1.29594791334323e-17!GO:0043412;biopolymer modification;5.12890714295826e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;6.15142237937939e-17!GO:0003676;nucleic acid binding;6.26384963795746e-17!GO:0044451;nucleoplasm part;8.77600106274349e-17!GO:0044455;mitochondrial membrane part;1.06783228080794e-16!GO:0019941;modification-dependent protein catabolic process;1.38591070386217e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.38591070386217e-16!GO:0044257;cellular protein catabolic process;1.64899923135339e-16!GO:0015935;small ribosomal subunit;2.18226027935096e-16!GO:0048770;pigment granule;2.67579717979615e-16!GO:0042470;melanosome;2.67579717979615e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.05724212963414e-16!GO:0006464;protein modification process;9.23676816137025e-16!GO:0016874;ligase activity;1.21482196562921e-15!GO:0044265;cellular macromolecule catabolic process;1.35943054868198e-15!GO:0043285;biopolymer catabolic process;1.61577510040541e-15!GO:0016070;RNA metabolic process;4.8873749032637e-15!GO:0015934;large ribosomal subunit;5.56893342205865e-15!GO:0016192;vesicle-mediated transport;1.16429946077916e-14!GO:0016462;pyrophosphatase activity;1.16865294201352e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.21105814854371e-14!GO:0030163;protein catabolic process;1.32880320558662e-14!GO:0044432;endoplasmic reticulum part;1.36752083947295e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.6057641569149e-14!GO:0043687;post-translational protein modification;3.48131488836535e-14!GO:0017111;nucleoside-triphosphatase activity;6.18919530837115e-14!GO:0008135;translation factor activity, nucleic acid binding;1.17480232194762e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.29322596192871e-13!GO:0009057;macromolecule catabolic process;1.48243899796483e-13!GO:0000166;nucleotide binding;3.95535420161125e-13!GO:0005746;mitochondrial respiratory chain;4.37448985744411e-13!GO:0005730;nucleolus;9.84372726564503e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.61224617247334e-12!GO:0006259;DNA metabolic process;1.84065536422424e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.73381342098973e-12!GO:0006605;protein targeting;2.8135215791549e-12!GO:0051082;unfolded protein binding;2.8135215791549e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.40075882599731e-12!GO:0048193;Golgi vesicle transport;3.49124140577652e-12!GO:0050136;NADH dehydrogenase (quinone) activity;5.16551297787089e-12!GO:0003954;NADH dehydrogenase activity;5.16551297787089e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.16551297787089e-12!GO:0006413;translational initiation;6.27053061992813e-12!GO:0006915;apoptosis;1.1167413433541e-11!GO:0012501;programmed cell death;1.17910658721757e-11!GO:0005768;endosome;1.5095385448084e-11!GO:0048523;negative regulation of cellular process;1.5095385448084e-11!GO:0008639;small protein conjugating enzyme activity;1.81377497778445e-11!GO:0044248;cellular catabolic process;2.45049234135522e-11!GO:0031980;mitochondrial lumen;3.10923167389979e-11!GO:0005759;mitochondrial matrix;3.10923167389979e-11!GO:0003743;translation initiation factor activity;3.33160609719377e-11!GO:0050794;regulation of cellular process;3.39728512538327e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.54138729833073e-11!GO:0004842;ubiquitin-protein ligase activity;3.6064197844321e-11!GO:0008219;cell death;3.90393477787494e-11!GO:0016265;death;3.90393477787494e-11!GO:0019787;small conjugating protein ligase activity;5.79632244419025e-11!GO:0006446;regulation of translational initiation;1.27829121990405e-10!GO:0016604;nuclear body;1.32018036219315e-10!GO:0006461;protein complex assembly;1.44904771089741e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.4523454144705e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.00820227940093e-10!GO:0000375;RNA splicing, via transesterification reactions;2.00820227940093e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.00820227940093e-10!GO:0005789;endoplasmic reticulum membrane;2.20813648290507e-10!GO:0030964;NADH dehydrogenase complex (quinone);2.89825274565791e-10!GO:0045271;respiratory chain complex I;2.89825274565791e-10!GO:0005747;mitochondrial respiratory chain complex I;2.89825274565791e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.00692466825319e-10!GO:0042773;ATP synthesis coupled electron transport;3.00692466825319e-10!GO:0005635;nuclear envelope;5.03463129585848e-10!GO:0048519;negative regulation of biological process;5.66546963173188e-10!GO:0032553;ribonucleotide binding;6.39997183391948e-10!GO:0032555;purine ribonucleotide binding;6.39997183391948e-10!GO:0003712;transcription cofactor activity;7.52392253844809e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.79213070492e-10!GO:0016607;nuclear speck;8.90788257762287e-10!GO:0006366;transcription from RNA polymerase II promoter;1.93349811997069e-09!GO:0005793;ER-Golgi intermediate compartment;2.03170551952783e-09!GO:0007049;cell cycle;2.17817331833885e-09!GO:0031965;nuclear membrane;2.85540164095307e-09!GO:0051246;regulation of protein metabolic process;3.21397555033135e-09!GO:0008565;protein transporter activity;3.74173814339687e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.26860891401144e-09!GO:0016881;acid-amino acid ligase activity;6.36145187695896e-09!GO:0005761;mitochondrial ribosome;8.94965602334945e-09!GO:0000313;organellar ribosome;8.94965602334945e-09!GO:0017076;purine nucleotide binding;1.02904410423942e-08!GO:0044431;Golgi apparatus part;1.11274320469878e-08!GO:0050789;regulation of biological process;1.86809614080459e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.37252249371796e-08!GO:0006913;nucleocytoplasmic transport;2.67115581794239e-08!GO:0030120;vesicle coat;2.69901299833232e-08!GO:0030662;coated vesicle membrane;2.69901299833232e-08!GO:0051186;cofactor metabolic process;4.08437339060687e-08!GO:0051169;nuclear transport;4.70204314097155e-08!GO:0006916;anti-apoptosis;4.98155094300931e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.54782474309574e-08!GO:0031324;negative regulation of cellular metabolic process;6.66990445948824e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.94115193729809e-08!GO:0006793;phosphorus metabolic process;8.63704962470002e-08!GO:0006796;phosphate metabolic process;8.63704962470002e-08!GO:0043069;negative regulation of programmed cell death;9.20983585141212e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.23085455568993e-08!GO:0043066;negative regulation of apoptosis;1.09156163503604e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.16967366468727e-07!GO:0048475;coated membrane;1.31419234569061e-07!GO:0030117;membrane coat;1.31419234569061e-07!GO:0005524;ATP binding;1.78029234873743e-07!GO:0009892;negative regulation of metabolic process;1.7970423922041e-07!GO:0003924;GTPase activity;2.0510117340297e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.65435740305985e-07!GO:0007264;small GTPase mediated signal transduction;2.67430531983921e-07!GO:0015986;ATP synthesis coupled proton transport;2.6974546899566e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.6974546899566e-07!GO:0044453;nuclear membrane part;2.88679340811337e-07!GO:0042254;ribosome biogenesis and assembly;3.04857722573204e-07!GO:0006323;DNA packaging;3.56219292186682e-07!GO:0004386;helicase activity;3.58186644519077e-07!GO:0032446;protein modification by small protein conjugation;3.58186644519077e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.83121154269193e-07!GO:0042981;regulation of apoptosis;3.95559712823318e-07!GO:0009056;catabolic process;4.85100921528119e-07!GO:0017038;protein import;5.34680664102012e-07!GO:0016567;protein ubiquitination;5.54901139060606e-07!GO:0009259;ribonucleotide metabolic process;5.56602214650766e-07!GO:0032559;adenyl ribonucleotide binding;5.63551709880438e-07!GO:0009260;ribonucleotide biosynthetic process;6.4006756751688e-07!GO:0043067;regulation of programmed cell death;6.80396794938981e-07!GO:0016564;transcription repressor activity;7.01835504229141e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.28650688902306e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.80761567204167e-07!GO:0009142;nucleoside triphosphate biosynthetic process;8.78162178840043e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.78162178840043e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.05510743716018e-06!GO:0007243;protein kinase cascade;1.16001435343206e-06!GO:0006164;purine nucleotide biosynthetic process;1.21789543176722e-06!GO:0005773;vacuole;1.23332874345986e-06!GO:0006732;coenzyme metabolic process;1.26060369723021e-06!GO:0016310;phosphorylation;1.32551782179355e-06!GO:0019829;cation-transporting ATPase activity;1.33557954134323e-06!GO:0005643;nuclear pore;1.4888725088719e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.6702492184517e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.6702492184517e-06!GO:0009150;purine ribonucleotide metabolic process;1.78510020928317e-06!GO:0031988;membrane-bound vesicle;1.78510020928317e-06!GO:0006163;purine nucleotide metabolic process;1.84609756994535e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.10336451056422e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.10336451056422e-06!GO:0016887;ATPase activity;2.4385962256892e-06!GO:0016481;negative regulation of transcription;2.50722062239391e-06!GO:0000139;Golgi membrane;2.50722062239391e-06!GO:0009060;aerobic respiration;3.18974657257002e-06!GO:0031982;vesicle;3.54539663963078e-06!GO:0006754;ATP biosynthetic process;4.0026810574165e-06!GO:0006753;nucleoside phosphate metabolic process;4.0026810574165e-06!GO:0000151;ubiquitin ligase complex;4.26251033285879e-06!GO:0003714;transcription corepressor activity;4.43478307863159e-06!GO:0006974;response to DNA damage stimulus;4.74167345272064e-06!GO:0044440;endosomal part;4.97470351300477e-06!GO:0010008;endosome membrane;4.97470351300477e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.0063797249796e-06!GO:0006399;tRNA metabolic process;5.17691479348401e-06!GO:0042623;ATPase activity, coupled;5.28246590555313e-06!GO:0009141;nucleoside triphosphate metabolic process;5.49054084092918e-06!GO:0051276;chromosome organization and biogenesis;5.50613265308561e-06!GO:0031410;cytoplasmic vesicle;6.13084355243457e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.11990280373614e-06!GO:0005788;endoplasmic reticulum lumen;7.16969660499091e-06!GO:0065002;intracellular protein transport across a membrane;7.55179538375664e-06!GO:0030554;adenyl nucleotide binding;7.58359671796407e-06!GO:0008026;ATP-dependent helicase activity;8.15949164906972e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.15949164906972e-06!GO:0004812;aminoacyl-tRNA ligase activity;8.15949164906972e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.15949164906972e-06!GO:0005798;Golgi-associated vesicle;8.73465698907544e-06!GO:0050657;nucleic acid transport;8.73465698907544e-06!GO:0051236;establishment of RNA localization;8.73465698907544e-06!GO:0050658;RNA transport;8.73465698907544e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.73734393422041e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.73734393422041e-06!GO:0000074;regulation of progression through cell cycle;9.91676046243219e-06!GO:0006403;RNA localization;1.00095237835759e-05!GO:0045333;cellular respiration;1.00537985684165e-05!GO:0051726;regulation of cell cycle;1.02570126030158e-05!GO:0009055;electron carrier activity;1.04817986436513e-05!GO:0005770;late endosome;1.063278679405e-05!GO:0000323;lytic vacuole;1.09955031439439e-05!GO:0005764;lysosome;1.09955031439439e-05!GO:0016568;chromatin modification;1.1034741704915e-05!GO:0043038;amino acid activation;1.21948935675425e-05!GO:0006418;tRNA aminoacylation for protein translation;1.21948935675425e-05!GO:0043039;tRNA aminoacylation;1.21948935675425e-05!GO:0051789;response to protein stimulus;1.29789570741296e-05!GO:0006986;response to unfolded protein;1.29789570741296e-05!GO:0022402;cell cycle process;1.3247082559934e-05!GO:0031252;leading edge;1.45136446466643e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.49598431630551e-05!GO:0000245;spliceosome assembly;1.59613091359871e-05!GO:0019222;regulation of metabolic process;1.70511608598113e-05!GO:0005525;GTP binding;1.71105541036706e-05!GO:0043623;cellular protein complex assembly;1.80242556695925e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.9637119854618e-05!GO:0019899;enzyme binding;2.23360693462755e-05!GO:0006613;cotranslational protein targeting to membrane;2.25559416859266e-05!GO:0045259;proton-transporting ATP synthase complex;2.4867554225411e-05!GO:0007005;mitochondrion organization and biogenesis;2.66922765823705e-05!GO:0003713;transcription coactivator activity;2.78961190856886e-05!GO:0046034;ATP metabolic process;2.96415499739622e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.58257420139134e-05!GO:0016563;transcription activator activity;4.64495133837652e-05!GO:0006333;chromatin assembly or disassembly;4.76412786615057e-05!GO:0008092;cytoskeletal protein binding;4.76412786615057e-05!GO:0051170;nuclear import;4.94546389946555e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.01445930961853e-05!GO:0065007;biological regulation;5.30306592867203e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.41896905188991e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.74699482538384e-05!GO:0006281;DNA repair;6.19551772743704e-05!GO:0046930;pore complex;6.32144599104298e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.36187490701897e-05!GO:0006099;tricarboxylic acid cycle;6.36187490701897e-05!GO:0046356;acetyl-CoA catabolic process;6.36187490701897e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.93037276531548e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.96585647458786e-05!GO:0043566;structure-specific DNA binding;7.14721537932317e-05!GO:0030057;desmosome;7.14721537932317e-05!GO:0006606;protein import into nucleus;7.68045372771463e-05!GO:0003724;RNA helicase activity;8.99947996763245e-05!GO:0005769;early endosome;9.01076182712169e-05!GO:0016740;transferase activity;9.29773395366835e-05!GO:0008654;phospholipid biosynthetic process;9.92753421954223e-05!GO:0009967;positive regulation of signal transduction;9.94290112677971e-05!GO:0016859;cis-trans isomerase activity;0.000108313104700811!GO:0048471;perinuclear region of cytoplasm;0.000115043021451278!GO:0032561;guanyl ribonucleotide binding;0.000118296887906574!GO:0019001;guanyl nucleotide binding;0.000118296887906574!GO:0007265;Ras protein signal transduction;0.000121985249429132!GO:0065004;protein-DNA complex assembly;0.000124544058255806!GO:0051188;cofactor biosynthetic process;0.000128512770320253!GO:0030133;transport vesicle;0.000134558190456653!GO:0045892;negative regulation of transcription, DNA-dependent;0.000138928261575579!GO:0042802;identical protein binding;0.000144334000721782!GO:0030867;rough endoplasmic reticulum membrane;0.000147915226284642!GO:0006752;group transfer coenzyme metabolic process;0.000149760636047282!GO:0006364;rRNA processing;0.000171544122117645!GO:0045786;negative regulation of progression through cell cycle;0.00017172413892007!GO:0006084;acetyl-CoA metabolic process;0.000172467234502599!GO:0016072;rRNA metabolic process;0.000172945738162057!GO:0000785;chromatin;0.000173184500806518!GO:0009719;response to endogenous stimulus;0.000184166492009758!GO:0051028;mRNA transport;0.000185699894817451!GO:0033116;ER-Golgi intermediate compartment membrane;0.000191500174029672!GO:0016787;hydrolase activity;0.000207369694811634!GO:0004298;threonine endopeptidase activity;0.000213937981897187!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000214666076299419!GO:0003697;single-stranded DNA binding;0.000214666076299419!GO:0048522;positive regulation of cellular process;0.000223665977795673!GO:0051427;hormone receptor binding;0.000227717378304321!GO:0008361;regulation of cell size;0.000229803892868657!GO:0016853;isomerase activity;0.000252557557955523!GO:0065009;regulation of a molecular function;0.000285155731903418!GO:0019843;rRNA binding;0.000289315024035667!GO:0005667;transcription factor complex;0.0002917198524828!GO:0030029;actin filament-based process;0.000302932932018785!GO:0009966;regulation of signal transduction;0.000427320014089254!GO:0035257;nuclear hormone receptor binding;0.000441117545189707!GO:0009109;coenzyme catabolic process;0.000442257058426328!GO:0016049;cell growth;0.000444973725186984!GO:0001558;regulation of cell growth;0.000469751031708551!GO:0007242;intracellular signaling cascade;0.000470047439646867!GO:0051187;cofactor catabolic process;0.000516796832877612!GO:0043021;ribonucleoprotein binding;0.000593886091263161!GO:0016044;membrane organization and biogenesis;0.000623563133423162!GO:0006612;protein targeting to membrane;0.000632098447971317!GO:0008250;oligosaccharyl transferase complex;0.000636073009142733!GO:0005791;rough endoplasmic reticulum;0.000679280829178058!GO:0003729;mRNA binding;0.000685814611692485!GO:0051252;regulation of RNA metabolic process;0.000866474532477402!GO:0030658;transport vesicle membrane;0.000873826198630315!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000926384037206684!GO:0016197;endosome transport;0.00100871655192083!GO:0004576;oligosaccharyl transferase activity;0.00101453459326681!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00102691162363268!GO:0005048;signal sequence binding;0.00108600286771157!GO:0009117;nucleotide metabolic process;0.00109338061866719!GO:0005885;Arp2/3 protein complex;0.00118578124596921!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00118834724252425!GO:0008186;RNA-dependent ATPase activity;0.00119254568218356!GO:0030118;clathrin coat;0.0012247573173631!GO:0005741;mitochondrial outer membrane;0.00123050218596649!GO:0016779;nucleotidyltransferase activity;0.00129594349186569!GO:0001726;ruffle;0.00136814608404157!GO:0051920;peroxiredoxin activity;0.00150760456160276!GO:0031968;organelle outer membrane;0.00157662595426215!GO:0046983;protein dimerization activity;0.00165881236863727!GO:0005905;coated pit;0.00166974361230955!GO:0031323;regulation of cellular metabolic process;0.00172424789989185!GO:0005694;chromosome;0.00173785251176513!GO:0006417;regulation of translation;0.00177550192371799!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00191416165803009!GO:0009108;coenzyme biosynthetic process;0.00192563328786411!GO:0030663;COPI coated vesicle membrane;0.00192641194522671!GO:0030126;COPI vesicle coat;0.00192641194522671!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00195044408858663!GO:0019867;outer membrane;0.00199455136841275!GO:0006650;glycerophospholipid metabolic process;0.00201090006224329!GO:0030660;Golgi-associated vesicle membrane;0.00203688103197702!GO:0044427;chromosomal part;0.00208349891336849!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00209622318055029!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00212010408984279!GO:0048518;positive regulation of biological process;0.0021865380638613!GO:0045454;cell redox homeostasis;0.00220405562339792!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00222428359300659!GO:0051168;nuclear export;0.00230124505186558!GO:0031072;heat shock protein binding;0.00245809761509206!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00246117525873457!GO:0030659;cytoplasmic vesicle membrane;0.00246117525873457!GO:0005762;mitochondrial large ribosomal subunit;0.00254668508265344!GO:0000315;organellar large ribosomal subunit;0.00254668508265344!GO:0048468;cell development;0.0027345892426057!GO:0015630;microtubule cytoskeleton;0.00274040901603548!GO:0005083;small GTPase regulator activity;0.00281072432152289!GO:0048500;signal recognition particle;0.00294319729803831!GO:0030132;clathrin coat of coated pit;0.00295701767511528!GO:0001666;response to hypoxia;0.00300261617427935!GO:0030384;phosphoinositide metabolic process;0.00308151963173448!GO:0004004;ATP-dependent RNA helicase activity;0.00315942265595207!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00319547064761719!GO:0004674;protein serine/threonine kinase activity;0.00321499095548105!GO:0006414;translational elongation;0.00325172001616313!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00326080060994032!GO:0005813;centrosome;0.00326080060994032!GO:0030119;AP-type membrane coat adaptor complex;0.00326080060994032!GO:0006891;intra-Golgi vesicle-mediated transport;0.00349461203024014!GO:0003711;transcription elongation regulator activity;0.00349461203024014!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00371271289130297!GO:0051128;regulation of cellular component organization and biogenesis;0.00389514908393414!GO:0018196;peptidyl-asparagine modification;0.00389514908393414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00389514908393414!GO:0008286;insulin receptor signaling pathway;0.0039115803043637!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00399978549439062!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00399978549439062!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00399978549439062!GO:0006334;nucleosome assembly;0.00406828346374063!GO:0031497;chromatin assembly;0.00410710708177364!GO:0040008;regulation of growth;0.00411869388952905!GO:0006402;mRNA catabolic process;0.00412805980886815!GO:0043681;protein import into mitochondrion;0.00483476144360251!GO:0000314;organellar small ribosomal subunit;0.00492426980267537!GO:0005763;mitochondrial small ribosomal subunit;0.00492426980267537!GO:0007010;cytoskeleton organization and biogenesis;0.00501989313487134!GO:0043488;regulation of mRNA stability;0.00503230052500703!GO:0043487;regulation of RNA stability;0.00503230052500703!GO:0046474;glycerophospholipid biosynthetic process;0.00513156848060118!GO:0051087;chaperone binding;0.00515957282323661!GO:0048487;beta-tubulin binding;0.0051951721000039!GO:0030127;COPII vesicle coat;0.00532306865614281!GO:0012507;ER to Golgi transport vesicle membrane;0.00532306865614281!GO:0007266;Rho protein signal transduction;0.00541571403304341!GO:0030131;clathrin adaptor complex;0.00561316988186868!GO:0046489;phosphoinositide biosynthetic process;0.00564925261158927!GO:0003899;DNA-directed RNA polymerase activity;0.00578125081348!GO:0006354;RNA elongation;0.00580822375262971!GO:0030137;COPI-coated vesicle;0.00593600665943118!GO:0050790;regulation of catalytic activity;0.00607729058005088!GO:0030134;ER to Golgi transport vesicle;0.00610333744771569!GO:0030125;clathrin vesicle coat;0.00613249579462513!GO:0030665;clathrin coated vesicle membrane;0.00613249579462513!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00613249579462513!GO:0015980;energy derivation by oxidation of organic compounds;0.0062839412290118!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00656365686187349!GO:0045047;protein targeting to ER;0.00656365686187349!GO:0016363;nuclear matrix;0.00659276849806072!GO:0008234;cysteine-type peptidase activity;0.00677461554161733!GO:0044433;cytoplasmic vesicle part;0.00693854530009888!GO:0003690;double-stranded DNA binding;0.00786475945753251!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00788583452097308!GO:0012506;vesicle membrane;0.00863093297832152!GO:0000059;protein import into nucleus, docking;0.00870168178793119!GO:0008312;7S RNA binding;0.00901075610995648!GO:0006401;RNA catabolic process;0.00934242699744145!GO:0046467;membrane lipid biosynthetic process;0.00943213447101529!GO:0050811;GABA receptor binding;0.00959486167172531!GO:0000278;mitotic cell cycle;0.00980544215894528!GO:0045893;positive regulation of transcription, DNA-dependent;0.00988502928893776!GO:0007030;Golgi organization and biogenesis;0.0100239040130023!GO:0010468;regulation of gene expression;0.0102130701924863!GO:0031625;ubiquitin protein ligase binding;0.0102130701924863!GO:0005815;microtubule organizing center;0.0103289654273719!GO:0045045;secretory pathway;0.0103544702085989!GO:0008610;lipid biosynthetic process;0.0103833802381889!GO:0030521;androgen receptor signaling pathway;0.0106245399724895!GO:0031326;regulation of cellular biosynthetic process;0.0107772763549837!GO:0006260;DNA replication;0.0112183390670498!GO:0022890;inorganic cation transmembrane transporter activity;0.0112183390670498!GO:0051101;regulation of DNA binding;0.0114254557890822!GO:0031901;early endosome membrane;0.0114615103940613!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0115025372090349!GO:0008139;nuclear localization sequence binding;0.0116794587749797!GO:0015631;tubulin binding;0.0118436004312166!GO:0030027;lamellipodium;0.0118665321709822!GO:0030041;actin filament polymerization;0.0120100941567789!GO:0051098;regulation of binding;0.0127152589901346!GO:0006350;transcription;0.0130318806374146!GO:0005938;cell cortex;0.0130752282956463!GO:0008270;zinc ion binding;0.0130852018934892!GO:0031529;ruffle organization and biogenesis;0.0133782775350659!GO:0007034;vacuolar transport;0.0133933465906807!GO:0048146;positive regulation of fibroblast proliferation;0.0135843572686899!GO:0035258;steroid hormone receptor binding;0.0136708155147524!GO:0006626;protein targeting to mitochondrion;0.0140410522405104!GO:0030833;regulation of actin filament polymerization;0.0145612241163563!GO:0048144;fibroblast proliferation;0.0147821658455446!GO:0048145;regulation of fibroblast proliferation;0.0147821658455446!GO:0006839;mitochondrial transport;0.0147821658455446!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0147821658455446!GO:0015399;primary active transmembrane transporter activity;0.0147821658455446!GO:0006818;hydrogen transport;0.0148371446485318!GO:0003746;translation elongation factor activity;0.0150476923080897!GO:0030176;integral to endoplasmic reticulum membrane;0.0155131180499891!GO:0051338;regulation of transferase activity;0.0161785935142023!GO:0043022;ribosome binding;0.0163144888016335!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0163684018123218!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0163684018123218!GO:0009889;regulation of biosynthetic process;0.0166529984540238!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0166529984540238!GO:0015002;heme-copper terminal oxidase activity;0.0166529984540238!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0166529984540238!GO:0004129;cytochrome-c oxidase activity;0.0166529984540238!GO:0015992;proton transport;0.0166752931896534!GO:0045941;positive regulation of transcription;0.0172966547749119!GO:0031418;L-ascorbic acid binding;0.0174612953092811!GO:0006611;protein export from nucleus;0.0182857992148753!GO:0007006;mitochondrial membrane organization and biogenesis;0.0185370714168609!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0186882274142236!GO:0007050;cell cycle arrest;0.0186882274142236!GO:0005912;adherens junction;0.0188088146279233!GO:0035035;histone acetyltransferase binding;0.018908397133637!GO:0017166;vinculin binding;0.0189455619343067!GO:0008180;signalosome;0.0193414984754391!GO:0006509;membrane protein ectodomain proteolysis;0.0194505259417217!GO:0033619;membrane protein proteolysis;0.0194505259417217!GO:0005684;U2-dependent spliceosome;0.0196354210017937!GO:0016301;kinase activity;0.0198028371902629!GO:0006518;peptide metabolic process;0.0198822971763049!GO:0006383;transcription from RNA polymerase III promoter;0.020339428264831!GO:0046578;regulation of Ras protein signal transduction;0.0203738951333189!GO:0031543;peptidyl-proline dioxygenase activity;0.0204728134476881!GO:0045334;clathrin-coated endocytic vesicle;0.0208205731806694!GO:0050681;androgen receptor binding;0.021092292151837!GO:0008287;protein serine/threonine phosphatase complex;0.0211360267064241!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0216737787204967!GO:0031902;late endosome membrane;0.0220786196258593!GO:0008154;actin polymerization and/or depolymerization;0.0229020646408901!GO:0051301;cell division;0.023110125299404!GO:0005774;vacuolar membrane;0.0235020476746725!GO:0006643;membrane lipid metabolic process;0.0238340034261053!GO:0005869;dynactin complex;0.0243071359659609!GO:0030832;regulation of actin filament length;0.0251669431562394!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0267088091877462!GO:0032535;regulation of cellular component size;0.0268285057363621!GO:0008601;protein phosphatase type 2A regulator activity;0.0272877465935068!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0276347888283168!GO:0043549;regulation of kinase activity;0.0276821525125983!GO:0022406;membrane docking;0.0286591731236084!GO:0048278;vesicle docking;0.0286591731236084!GO:0006376;mRNA splice site selection;0.0299148992695142!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0299148992695142!GO:0051287;NAD binding;0.0301926463445615!GO:0000209;protein polyubiquitination;0.030300473184417!GO:0032507;maintenance of cellular protein localization;0.0304796655861718!GO:0003779;actin binding;0.0306374802145762!GO:0007041;lysosomal transport;0.0306374802145762!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0308418551711222!GO:0033043;regulation of organelle organization and biogenesis;0.0308418551711222!GO:0032940;secretion by cell;0.0310348410639976!GO:0005856;cytoskeleton;0.0311044382791713!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0314453369576572!GO:0016860;intramolecular oxidoreductase activity;0.0315368988797674!GO:0030880;RNA polymerase complex;0.0317218712631136!GO:0044452;nucleolar part;0.032530496911465!GO:0043087;regulation of GTPase activity;0.0335332369700293!GO:0016272;prefoldin complex;0.0342152902274019!GO:0008144;drug binding;0.034587751251315!GO:0005832;chaperonin-containing T-complex;0.0347040429440982!GO:0007028;cytoplasm organization and biogenesis;0.0347418222973356!GO:0016251;general RNA polymerase II transcription factor activity;0.0354364251507603!GO:0006904;vesicle docking during exocytosis;0.0355558606706694!GO:0000049;tRNA binding;0.0359167461749989!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0378733313312174!GO:0042787;protein ubiquitination during ubiquitin-dependent protein catabolic process;0.038448566071113!GO:0030695;GTPase regulator activity;0.0390026921926871!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0394054596298093!GO:0000159;protein phosphatase type 2A complex;0.0399335483986889!GO:0008047;enzyme activator activity;0.0401116365846275!GO:0004860;protein kinase inhibitor activity;0.0403498743937494!GO:0006892;post-Golgi vesicle-mediated transport;0.0407133403866841!GO:0006595;polyamine metabolic process;0.0412133422869887!GO:0030518;steroid hormone receptor signaling pathway;0.0415163687472234!GO:0006979;response to oxidative stress;0.0415848869764747!GO:0008426;protein kinase C inhibitor activity;0.0419929754749846!GO:0046966;thyroid hormone receptor binding;0.0419929754749846!GO:0046914;transition metal ion binding;0.0420081356501677!GO:0006644;phospholipid metabolic process;0.0431046906139897!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0431229319554868!GO:0016491;oxidoreductase activity;0.0431904357659792!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0435641440375513!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0442050463831403!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0442050463831403!GO:0006897;endocytosis;0.0443162120683048!GO:0010324;membrane invagination;0.0443162120683048!GO:0016311;dephosphorylation;0.0444231838811766!GO:0045859;regulation of protein kinase activity;0.0444820685520377!GO:0033673;negative regulation of kinase activity;0.0445704812578995!GO:0006469;negative regulation of protein kinase activity;0.0445704812578995!GO:0005099;Ras GTPase activator activity;0.0454435777180282!GO:0009165;nucleotide biosynthetic process;0.0455795114881968!GO:0031371;ubiquitin conjugating enzyme complex;0.0472667622726193!GO:0006506;GPI anchor biosynthetic process;0.0473044133314858!GO:0030911;TPR domain binding;0.0478912900496904!GO:0019798;procollagen-proline dioxygenase activity;0.0497817106883261!GO:0043034;costamere;0.0498080237790876!GO:0019783;small conjugating protein-specific protease activity;0.0498080237790876
|sample_id=12235
|sample_id=12235
|sample_note=Jan 20 librarian
|sample_note=Jan 20 librarian
Line 76: Line 100:
|sample_tissue=amnion
|sample_tissue=amnion
|top_motifs=SNAI1..3:2.16190909817;XCPE1{core}:2.14227615437;NKX2-1,4:2.11607306753;FOXL1:2.10151695162;ZNF148:1.77095296295;GLI1..3:1.76314649366;SP1:1.7460838489;PPARG:1.70816055673;EP300:1.64424600171;TBP:1.6341154056;HIF1A:1.56468733626;PAX4:1.5302100866;FOXN1:1.46529568693;ZEB1:1.45803942097;FOXM1:1.36057699089;TEAD1:1.34043189527;HOX{A6,A7,B6,B7}:1.20242386226;TFAP2{A,C}:1.18667200167;MAZ:1.1781437344;POU1F1:1.11736419438;RORA:1.1072086865;FOXO1,3,4:1.09921797978;TP53:1.01492126963;NKX2-2,8:1.01446643488;CDC5L:1.0061692932;TBX4,5:0.962142549463;HAND1,2:0.923677014077;FOS_FOS{B,L1}_JUN{B,D}:0.890858630013;AIRE:0.865748512941;PAX8:0.805135145389;POU6F1:0.782589791336;NKX2-3_NKX2-5:0.762432062054;HBP1_HMGB_SSRP1_UBTF:0.740320312694;TLX2:0.723738775285;MYOD1:0.700179661452;BACH2:0.673277450901;RXRA_VDR{dimer}:0.613803882208;VSX1,2:0.592643134202;HMX1:0.548082083179;GCM1,2:0.534683993948;ONECUT1,2:0.519666959872;FOX{I1,J2}:0.511040434486;UFEwm:0.507979120634;TEF:0.488176825568;JUN:0.473925110087;FOX{D1,D2}:0.472515614925;HMGA1,2:0.448681392852;POU3F1..4:0.44506211634;bHLH_family:0.404602664347;FOSL2:0.401188210043;MED-1{core}:0.357856692095;ARID5B:0.351764800103;NR1H4:0.346191930447;EVI1:0.344253331028;HOXA9_MEIS1:0.336337580389;BPTF:0.331542906005;HSF1,2:0.316492871011;HOX{A4,D4}:0.315909067646;TFCP2:0.289706501195;POU2F1..3:0.285223589399;IKZF1:0.283461579551;GZF1:0.278342735942;ZBTB6:0.26072189781;ESR1:0.253970867638;ZNF238:0.245888058397;EN1,2:0.237816444045;MTF1:0.180905729421;LEF1_TCF7_TCF7L1,2:0.150321224164;ADNP_IRX_SIX_ZHX:0.14295944024;EBF1:0.14195166314;HLF:0.139419496126;ATF4:0.139197038542;ZIC1..3:0.137235939445;PITX1..3:0.135415705623;HIC1:0.123991186232;ATF6:0.0883920246071;CREB1:0.0617826882515;PAX2:0.04903451049;IRF7:0.0420306713935;XBP1:0.0240982769359;EGR1..3:0.0224255501278;TFAP2B:0.00504136422549;GTF2I:-0.0136416904806;ALX1:-0.0340580693432;ATF5_CREB3:-0.0514686575481;ZNF143:-0.0592945806612;ESRRA:-0.0600692247571;NKX3-2:-0.0616172379074;HOX{A5,B5}:-0.0671885819373;RFX1:-0.0682687400475;HNF1A:-0.0806753133898;HES1:-0.0877325540036;GATA6:-0.0987316624668;ELK1,4_GABP{A,B1}:-0.107711943968;SOX5:-0.110179249621;NFE2:-0.110514936657;PAX5:-0.133377217519;TLX1..3_NFIC{dimer}:-0.136056746249;MYBL2:-0.155023855158;PAX1,9:-0.161081677803;FOXP3:-0.163695931792;SOX17:-0.169391711108;NFATC1..3:-0.187184367186;GTF2A1,2:-0.24437557745;ZNF384:-0.248177614956;ZNF423:-0.248463334704;STAT1,3:-0.251552950408;SMAD1..7,9:-0.252625791866;RFX2..5_RFXANK_RFXAP:-0.256226844567;MTE{core}:-0.259622810585;OCT4_SOX2{dimer}:-0.265731232838;MEF2{A,B,C,D}:-0.268060798248;FOXP1:-0.310729947617;PATZ1:-0.311961092153;ALX4:-0.312497646784;MYFfamily:-0.318679420942;ZFP161:-0.336606664745;NFKB1_REL_RELA:-0.346682996873;CRX:-0.35944976067;NRF1:-0.366402062346;SREBF1,2:-0.386757379279;NFIL3:-0.393040658929;NFY{A,B,C}:-0.396920894096;STAT2,4,6:-0.42128161243;REST:-0.430795583972;FOXQ1:-0.454642959236;KLF4:-0.45794835219;NHLH1,2:-0.460068761402;MYB:-0.461514541031;FOXA2:-0.466350470028;MAFB:-0.475479130508;SPI1:-0.521777526767;GFI1:-0.522177438155;NANOG{mouse}:-0.522983727255;SRF:-0.528557858783;CEBPA,B_DDIT3:-0.537485939781;IRF1,2:-0.538986899984;T:-0.54045263588;STAT5{A,B}:-0.55307098838;RUNX1..3:-0.564278265135;RREB1:-0.569703089529;LMO2:-0.576932090786;HNF4A_NR2F1,2:-0.579483619281;ATF2:-0.599296006023;TFDP1:-0.611045239614;TFAP4:-0.614300829147;DBP:-0.62398189567;ZBTB16:-0.631580639954;MZF1:-0.648118964011;SOX{8,9,10}:-0.669538414994;AR:-0.694911199116;RBPJ:-0.704201358299;SPZ1:-0.708507984019;TGIF1:-0.742926847783;ETS1,2:-0.744199524343;NR6A1:-0.755814673849;AHR_ARNT_ARNT2:-0.770706594842;NR3C1:-0.787987543522;PBX1:-0.788362764374;SPIB:-0.793366340092;NR5A1,2:-0.795814527636;RXR{A,B,G}:-0.805193596818;NKX3-1:-0.832385953914;CUX2:-0.84273382091;YY1:-0.852061931212;BREu{core}:-0.856186869928;PAX3,7:-0.858739901962;E2F1..5:-0.902326457519;SOX2:-0.916367358305;TAL1_TCF{3,4,12}:-0.919974428225;ELF1,2,4:-0.937791710707;NKX6-1,2:-1.00258447663;FOX{F1,F2,J1}:-1.00797462171;GFI1B:-1.00956320237;DMAP1_NCOR{1,2}_SMARC:-1.02301184149;TOPORS:-1.03539773229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05452033961;NFE2L2:-1.06395185577;LHX3,4:-1.10051212123;PDX1:-1.12748846049;PAX6:-1.12828461752;NFE2L1:-1.15376169108;PRDM1:-1.22544797915;FOXD3:-1.23688755464;PRRX1,2:-1.27261876604;IKZF2:-1.30634666627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34768576437;CDX1,2,4:-1.45782021382;GATA4:-1.49928936419;NANOG:-1.58836487634;NFIX:-1.94706176666;POU5F1:-2.09632609962
|top_motifs=SNAI1..3:2.16190909817;XCPE1{core}:2.14227615437;NKX2-1,4:2.11607306753;FOXL1:2.10151695162;ZNF148:1.77095296295;GLI1..3:1.76314649366;SP1:1.7460838489;PPARG:1.70816055673;EP300:1.64424600171;TBP:1.6341154056;HIF1A:1.56468733626;PAX4:1.5302100866;FOXN1:1.46529568693;ZEB1:1.45803942097;FOXM1:1.36057699089;TEAD1:1.34043189527;HOX{A6,A7,B6,B7}:1.20242386226;TFAP2{A,C}:1.18667200167;MAZ:1.1781437344;POU1F1:1.11736419438;RORA:1.1072086865;FOXO1,3,4:1.09921797978;TP53:1.01492126963;NKX2-2,8:1.01446643488;CDC5L:1.0061692932;TBX4,5:0.962142549463;HAND1,2:0.923677014077;FOS_FOS{B,L1}_JUN{B,D}:0.890858630013;AIRE:0.865748512941;PAX8:0.805135145389;POU6F1:0.782589791336;NKX2-3_NKX2-5:0.762432062054;HBP1_HMGB_SSRP1_UBTF:0.740320312694;TLX2:0.723738775285;MYOD1:0.700179661452;BACH2:0.673277450901;RXRA_VDR{dimer}:0.613803882208;VSX1,2:0.592643134202;HMX1:0.548082083179;GCM1,2:0.534683993948;ONECUT1,2:0.519666959872;FOX{I1,J2}:0.511040434486;UFEwm:0.507979120634;TEF:0.488176825568;JUN:0.473925110087;FOX{D1,D2}:0.472515614925;HMGA1,2:0.448681392852;POU3F1..4:0.44506211634;bHLH_family:0.404602664347;FOSL2:0.401188210043;MED-1{core}:0.357856692095;ARID5B:0.351764800103;NR1H4:0.346191930447;EVI1:0.344253331028;HOXA9_MEIS1:0.336337580389;BPTF:0.331542906005;HSF1,2:0.316492871011;HOX{A4,D4}:0.315909067646;TFCP2:0.289706501195;POU2F1..3:0.285223589399;IKZF1:0.283461579551;GZF1:0.278342735942;ZBTB6:0.26072189781;ESR1:0.253970867638;ZNF238:0.245888058397;EN1,2:0.237816444045;MTF1:0.180905729421;LEF1_TCF7_TCF7L1,2:0.150321224164;ADNP_IRX_SIX_ZHX:0.14295944024;EBF1:0.14195166314;HLF:0.139419496126;ATF4:0.139197038542;ZIC1..3:0.137235939445;PITX1..3:0.135415705623;HIC1:0.123991186232;ATF6:0.0883920246071;CREB1:0.0617826882515;PAX2:0.04903451049;IRF7:0.0420306713935;XBP1:0.0240982769359;EGR1..3:0.0224255501278;TFAP2B:0.00504136422549;GTF2I:-0.0136416904806;ALX1:-0.0340580693432;ATF5_CREB3:-0.0514686575481;ZNF143:-0.0592945806612;ESRRA:-0.0600692247571;NKX3-2:-0.0616172379074;HOX{A5,B5}:-0.0671885819373;RFX1:-0.0682687400475;HNF1A:-0.0806753133898;HES1:-0.0877325540036;GATA6:-0.0987316624668;ELK1,4_GABP{A,B1}:-0.107711943968;SOX5:-0.110179249621;NFE2:-0.110514936657;PAX5:-0.133377217519;TLX1..3_NFIC{dimer}:-0.136056746249;MYBL2:-0.155023855158;PAX1,9:-0.161081677803;FOXP3:-0.163695931792;SOX17:-0.169391711108;NFATC1..3:-0.187184367186;GTF2A1,2:-0.24437557745;ZNF384:-0.248177614956;ZNF423:-0.248463334704;STAT1,3:-0.251552950408;SMAD1..7,9:-0.252625791866;RFX2..5_RFXANK_RFXAP:-0.256226844567;MTE{core}:-0.259622810585;OCT4_SOX2{dimer}:-0.265731232838;MEF2{A,B,C,D}:-0.268060798248;FOXP1:-0.310729947617;PATZ1:-0.311961092153;ALX4:-0.312497646784;MYFfamily:-0.318679420942;ZFP161:-0.336606664745;NFKB1_REL_RELA:-0.346682996873;CRX:-0.35944976067;NRF1:-0.366402062346;SREBF1,2:-0.386757379279;NFIL3:-0.393040658929;NFY{A,B,C}:-0.396920894096;STAT2,4,6:-0.42128161243;REST:-0.430795583972;FOXQ1:-0.454642959236;KLF4:-0.45794835219;NHLH1,2:-0.460068761402;MYB:-0.461514541031;FOXA2:-0.466350470028;MAFB:-0.475479130508;SPI1:-0.521777526767;GFI1:-0.522177438155;NANOG{mouse}:-0.522983727255;SRF:-0.528557858783;CEBPA,B_DDIT3:-0.537485939781;IRF1,2:-0.538986899984;T:-0.54045263588;STAT5{A,B}:-0.55307098838;RUNX1..3:-0.564278265135;RREB1:-0.569703089529;LMO2:-0.576932090786;HNF4A_NR2F1,2:-0.579483619281;ATF2:-0.599296006023;TFDP1:-0.611045239614;TFAP4:-0.614300829147;DBP:-0.62398189567;ZBTB16:-0.631580639954;MZF1:-0.648118964011;SOX{8,9,10}:-0.669538414994;AR:-0.694911199116;RBPJ:-0.704201358299;SPZ1:-0.708507984019;TGIF1:-0.742926847783;ETS1,2:-0.744199524343;NR6A1:-0.755814673849;AHR_ARNT_ARNT2:-0.770706594842;NR3C1:-0.787987543522;PBX1:-0.788362764374;SPIB:-0.793366340092;NR5A1,2:-0.795814527636;RXR{A,B,G}:-0.805193596818;NKX3-1:-0.832385953914;CUX2:-0.84273382091;YY1:-0.852061931212;BREu{core}:-0.856186869928;PAX3,7:-0.858739901962;E2F1..5:-0.902326457519;SOX2:-0.916367358305;TAL1_TCF{3,4,12}:-0.919974428225;ELF1,2,4:-0.937791710707;NKX6-1,2:-1.00258447663;FOX{F1,F2,J1}:-1.00797462171;GFI1B:-1.00956320237;DMAP1_NCOR{1,2}_SMARC:-1.02301184149;TOPORS:-1.03539773229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.05452033961;NFE2L2:-1.06395185577;LHX3,4:-1.10051212123;PDX1:-1.12748846049;PAX6:-1.12828461752;NFE2L1:-1.15376169108;PRDM1:-1.22544797915;FOXD3:-1.23688755464;PRRX1,2:-1.27261876604;IKZF2:-1.30634666627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.34768576437;CDX1,2,4:-1.45782021382;GATA4:-1.49928936419;NANOG:-1.58836487634;NFIX:-1.94706176666;POU5F1:-2.09632609962
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12235-129G3;search_select_hide=table117:FF:12235-129G3
}}
}}

Latest revision as of 18:35, 4 June 2020

Name:amniotic membrane cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12502
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineNA
companyNA
collaborationHiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005437
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12502 CAGE DRX008537 DRR009409
Accession ID Hg19

Library idBAMCTSS
CNhs12502 DRZ000834 DRZ002219
Accession ID Hg38

Library idBAMCTSS
CNhs12502 DRZ012184 DRZ013569
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.317
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.638
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.282
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0499
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.138
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.104
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.235
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.274
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.427
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.306
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.291
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.638
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.469
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.603
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.17
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.093
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.464
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.339
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.51
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0.481
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0454
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.341
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.386
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0.498
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.17
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma1.052
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.924
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12502

Jaspar motifP-value
MA0002.20.00378
MA0003.10.994
MA0004.10.469
MA0006.10.00643
MA0007.10.997
MA0009.10.912
MA0014.10.0533
MA0017.10.106
MA0018.20.81
MA0019.10.183
MA0024.10.0219
MA0025.10.366
MA0027.10.409
MA0028.10.227
MA0029.10.106
MA0030.10.503
MA0031.10.396
MA0035.20.193
MA0038.10.212
MA0039.26.88265e-4
MA0040.10.521
MA0041.10.301
MA0042.10.744
MA0043.10.0901
MA0046.10.175
MA0047.20.493
MA0048.10.359
MA0050.10.00288
MA0051.10.095
MA0052.10.54
MA0055.10.706
MA0057.10.848
MA0058.10.223
MA0059.10.0464
MA0060.10.202
MA0061.17.29636e-4
MA0062.28.17674e-4
MA0065.20.8
MA0066.10.67
MA0067.10.245
MA0068.10.312
MA0069.10.672
MA0070.10.734
MA0071.10.484
MA0072.10.505
MA0073.10.889
MA0074.10.534
MA0076.10.0246
MA0077.10.658
MA0078.10.926
MA0079.20.124
MA0080.25.98483e-9
MA0081.10.0159
MA0083.10.444
MA0084.10.55
MA0087.10.327
MA0088.10.149
MA0090.11.18572e-8
MA0091.10.289
MA0092.10.541
MA0093.10.434
MA0099.24.31633e-8
MA0100.10.367
MA0101.15.81523e-4
MA0102.20.163
MA0103.11.89087e-7
MA0104.20.0156
MA0105.10.00383
MA0106.10.817
MA0107.11.39122e-4
MA0108.29.08491e-6
MA0111.10.977
MA0112.20.84
MA0113.10.193
MA0114.10.44
MA0115.10.432
MA0116.10.063
MA0117.10.796
MA0119.10.619
MA0122.10.36
MA0124.10.913
MA0125.10.416
MA0131.10.836
MA0135.10.638
MA0136.15.30519e-8
MA0137.20.111
MA0138.20.733
MA0139.10.404
MA0140.10.962
MA0141.10.0325
MA0142.10.871
MA0143.10.655
MA0144.10.452
MA0145.10.109
MA0146.10.0566
MA0147.10.036
MA0148.10.68
MA0149.10.925
MA0150.10.539
MA0152.10.291
MA0153.10.289
MA0154.10.234
MA0155.10.487
MA0156.11.19437e-8
MA0157.10.959
MA0159.10.619
MA0160.10.882
MA0162.10.543
MA0163.10.0826
MA0164.10.21
MA0258.10.0917
MA0259.10.746



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12502

Novel motifP-value
10.871
100.694
1000.382
1010.162
1020.555
1030.501
1040.551
1050.301
1060.291
1070.341
1080.0772
1090.0052
110.509
1100.44
1110.726
1120.738
1130.00165
1140.784
1150.624
1160.274
1170.29
1180.00954
1190.828
120.702
1200.361
1210.118
1220.471
1230.0287
1240.0134
1250.44
1260.651
1270.764
1280.614
1290.58
130.661
1300.204
1310.0337
1320.227
1330.0312
1340.047
1350.769
1360.00163
1370.0835
1380.984
1390.516
140.906
1400.983
1410.177
1420.824
1430.154
1440.691
1450.576
1460.372
1470.58
1480.602
1490.322
150.518
1500.329
1510.125
1520.00658
1530.889
1540.643
1550.0308
1560.346
1570.471
1580.253
1590.979
160.138
1600.66
1610.84
1620.806
1630.175
1640.287
1650.339
1660.6
1670.527
1680.836
1690.101
170.742
180.229
190.807
20.256
200.394
210.261
220.196
230.451
240.793
250.552
260.819
270.673
280.974
290.228
30.814
300.0693
310.842
320.573
330.869
340.17
350.00155
360.0744
370.527
380.732
390.368
40.61
400.558
410.457
420.752
430.688
440.811
450.0511
460.288
470.25
480.782
490.363
50.61
500.5
510.817
520.229
530.242
540.826
550.348
560.49
570.963
580.539
590.902
60.823
600.792
610.874
620.507
630.847
640.955
650.732
660.604
670.708
680.764
690.0426
70.581
700.404
710.156
720.338
730.0118
740.0297
750.309
760.694
770.51
780.409
790.589
80.419
800.25
810.423
820.633
830.539
840.314
850.133
860.516
870.674
880.629
890.418
90.732
900.664
910.813
920.36
930.891
940.141
950.644
960.786
970.225
980.644
990.903



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12502


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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