Personal tools

FF:10162-103A9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 69: Line 69:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.06967464367042e-219!GO:0043226;organelle;2.3700077949042e-150!GO:0043229;intracellular organelle;7.98719785862125e-150!GO:0043227;membrane-bound organelle;1.75331716942706e-147!GO:0043231;intracellular membrane-bound organelle;2.0537455988028e-147!GO:0005737;cytoplasm;1.05565181069388e-142!GO:0044444;cytoplasmic part;1.78886118635246e-93!GO:0044422;organelle part;8.81721226616166e-84!GO:0044446;intracellular organelle part;2.2635682684232e-82!GO:0032991;macromolecular complex;1.47431859622446e-60!GO:0005515;protein binding;1.64255303053113e-59!GO:0043170;macromolecule metabolic process;1.11640431266403e-55!GO:0005634;nucleus;1.22866352938363e-55!GO:0044238;primary metabolic process;1.13484667285533e-54!GO:0033036;macromolecule localization;6.88614806866174e-54!GO:0044428;nuclear part;1.54481597625058e-53!GO:0003723;RNA binding;2.31400508121207e-53!GO:0015031;protein transport;2.52367069748393e-53!GO:0044237;cellular metabolic process;5.26355418356913e-53!GO:0045184;establishment of protein localization;1.06063182531008e-49!GO:0008104;protein localization;3.70805437919483e-49!GO:0043233;organelle lumen;5.92465532174266e-48!GO:0031974;membrane-enclosed lumen;5.92465532174266e-48!GO:0030529;ribonucleoprotein complex;5.09971899638984e-47!GO:0016043;cellular component organization and biogenesis;1.16626554884466e-45!GO:0043283;biopolymer metabolic process;3.68032444231688e-41!GO:0046907;intracellular transport;2.30292024399746e-40!GO:0031090;organelle membrane;3.9958823309462e-39!GO:0010467;gene expression;2.68027112583346e-37!GO:0006396;RNA processing;5.64977569233419e-37!GO:0016071;mRNA metabolic process;2.72206709295883e-36!GO:0006886;intracellular protein transport;3.73188277304955e-34!GO:0031981;nuclear lumen;9.94127924943919e-34!GO:0005739;mitochondrion;2.80201515054648e-33!GO:0051649;establishment of cellular localization;2.17092962193218e-32!GO:0019538;protein metabolic process;9.95910194318273e-32!GO:0043234;protein complex;1.87287222081748e-31!GO:0051641;cellular localization;3.01184831589753e-31!GO:0008380;RNA splicing;2.47091175003569e-30!GO:0006397;mRNA processing;5.73586068803212e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.55781513571327e-29!GO:0044260;cellular macromolecule metabolic process;3.5121164749623e-27!GO:0044267;cellular protein metabolic process;3.68482390728191e-27!GO:0016192;vesicle-mediated transport;8.09615578535779e-27!GO:0031967;organelle envelope;4.88538347375374e-24!GO:0031975;envelope;8.44564166521116e-24!GO:0005654;nucleoplasm;1.29734906855813e-23!GO:0016070;RNA metabolic process;2.83082841758694e-23!GO:0005794;Golgi apparatus;1.37583089730599e-22!GO:0005840;ribosome;2.63808716366863e-22!GO:0044429;mitochondrial part;5.19318310541013e-22!GO:0005829;cytosol;1.54500242372817e-21!GO:0006412;translation;1.9359346559291e-21!GO:0044451;nucleoplasm part;3.18840867627022e-21!GO:0006512;ubiquitin cycle;8.90479223476938e-21!GO:0000166;nucleotide binding;9.17170267244693e-21!GO:0005681;spliceosome;2.48319284803911e-20!GO:0003676;nucleic acid binding;1.35858311517772e-19!GO:0006119;oxidative phosphorylation;1.01475158864298e-18!GO:0065003;macromolecular complex assembly;2.10521281465787e-18!GO:0012505;endomembrane system;5.49571908259997e-18!GO:0003735;structural constituent of ribosome;3.08208912732761e-17!GO:0048193;Golgi vesicle transport;3.36461152847094e-17!GO:0006996;organelle organization and biogenesis;9.06544915247779e-17!GO:0016874;ligase activity;1.46475503890347e-16!GO:0006457;protein folding;2.58582996144585e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.87397798379438e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.75478013441131e-16!GO:0019941;modification-dependent protein catabolic process;8.68560475960719e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.68560475960719e-16!GO:0043412;biopolymer modification;8.83260701841458e-16!GO:0033279;ribosomal subunit;1.11647612642322e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.13488921799195e-15!GO:0008134;transcription factor binding;1.18226184931076e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.21964722228826e-15!GO:0016462;pyrophosphatase activity;1.25253912432902e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.31619819356193e-15!GO:0044257;cellular protein catabolic process;1.88408278982049e-15!GO:0022607;cellular component assembly;2.04378223638843e-15!GO:0031982;vesicle;3.57973384927143e-15!GO:0019866;organelle inner membrane;6.48512987364144e-15!GO:0017111;nucleoside-triphosphatase activity;1.2384527650234e-14!GO:0005740;mitochondrial envelope;1.24259289098259e-14!GO:0043687;post-translational protein modification;1.46011332797042e-14!GO:0031410;cytoplasmic vesicle;1.46011332797042e-14!GO:0006464;protein modification process;1.72657800891882e-14!GO:0044265;cellular macromolecule catabolic process;1.8433720969606e-14!GO:0031966;mitochondrial membrane;1.8433720969606e-14!GO:0009059;macromolecule biosynthetic process;2.68545619896633e-14!GO:0005743;mitochondrial inner membrane;4.06609885780798e-14!GO:0016604;nuclear body;7.04909169622254e-14!GO:0032553;ribonucleotide binding;1.22795447276579e-13!GO:0032555;purine ribonucleotide binding;1.22795447276579e-13!GO:0017076;purine nucleotide binding;1.6848754972427e-13!GO:0006605;protein targeting;3.11420984672523e-13!GO:0043285;biopolymer catabolic process;3.69495901744487e-13!GO:0031988;membrane-bound vesicle;3.7803761916333e-13!GO:0048770;pigment granule;6.65232700667576e-13!GO:0042470;melanosome;6.65232700667576e-13!GO:0016607;nuclear speck;8.37677220437957e-13!GO:0009058;biosynthetic process;1.04803106151938e-12!GO:0016023;cytoplasmic membrane-bound vesicle;1.4904080150524e-12!GO:0008565;protein transporter activity;1.66973767892459e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.03519561060914e-12!GO:0044249;cellular biosynthetic process;2.37947512393313e-12!GO:0022618;protein-RNA complex assembly;3.48406306645773e-12!GO:0051082;unfolded protein binding;4.05240709789152e-12!GO:0044455;mitochondrial membrane part;5.91944329253849e-12!GO:0045045;secretory pathway;6.25235293968474e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.18617922226406e-12!GO:0005746;mitochondrial respiratory chain;1.09597668238343e-11!GO:0030163;protein catabolic process;2.39002840065154e-11!GO:0043228;non-membrane-bound organelle;2.42512744841508e-11!GO:0043232;intracellular non-membrane-bound organelle;2.42512744841508e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.42512744841508e-11!GO:0003954;NADH dehydrogenase activity;2.42512744841508e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.42512744841508e-11!GO:0031965;nuclear membrane;3.5262361084703e-11!GO:0008135;translation factor activity, nucleic acid binding;4.58343822761654e-11!GO:0051169;nuclear transport;4.88540403843857e-11!GO:0009057;macromolecule catabolic process;5.30441160505097e-11!GO:0044445;cytosolic part;8.88228081386313e-11!GO:0048475;coated membrane;9.39036868540193e-11!GO:0030117;membrane coat;9.39036868540193e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;9.43104895401147e-11!GO:0000375;RNA splicing, via transesterification reactions;9.43104895401147e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.43104895401147e-11!GO:0006913;nucleocytoplasmic transport;1.79340592765171e-10!GO:0005635;nuclear envelope;2.58276895270803e-10!GO:0005730;nucleolus;2.99363639647285e-10!GO:0003712;transcription cofactor activity;3.31226270427585e-10!GO:0006259;DNA metabolic process;3.762299332772e-10!GO:0044431;Golgi apparatus part;4.27829443712608e-10!GO:0005783;endoplasmic reticulum;4.31258469621011e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.06629179051465e-10!GO:0008639;small protein conjugating enzyme activity;5.11727622146134e-10!GO:0004842;ubiquitin-protein ligase activity;6.06690504388942e-10!GO:0042775;organelle ATP synthesis coupled electron transport;9.53755812747499e-10!GO:0042773;ATP synthesis coupled electron transport;9.53755812747499e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.50646726983642e-09!GO:0045271;respiratory chain complex I;1.50646726983642e-09!GO:0005747;mitochondrial respiratory chain complex I;1.50646726983642e-09!GO:0031980;mitochondrial lumen;2.22273415921938e-09!GO:0005759;mitochondrial matrix;2.22273415921938e-09!GO:0005524;ATP binding;2.46706760078811e-09!GO:0032559;adenyl ribonucleotide binding;2.50201315530072e-09!GO:0019787;small conjugating protein ligase activity;3.04907080258765e-09!GO:0044248;cellular catabolic process;3.44010823148176e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.56777495828795e-09!GO:0030554;adenyl nucleotide binding;3.97426995099512e-09!GO:0050794;regulation of cellular process;4.55764263857636e-09!GO:0032940;secretion by cell;4.74918263282419e-09!GO:0016568;chromatin modification;5.64328178490471e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.01858780684066e-08!GO:0006793;phosphorus metabolic process;1.0465533609309e-08!GO:0006796;phosphate metabolic process;1.0465533609309e-08!GO:0015935;small ribosomal subunit;1.1553540443829e-08!GO:0005768;endosome;1.16230757058226e-08!GO:0016887;ATPase activity;1.16230757058226e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16420308421591e-08!GO:0019829;cation-transporting ATPase activity;1.3086189372884e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.32659304615918e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.52139968305773e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.68352994027011e-08!GO:0016564;transcription repressor activity;1.79139848345638e-08!GO:0006403;RNA localization;2.00474513950263e-08!GO:0030120;vesicle coat;2.03939799362116e-08!GO:0030662;coated vesicle membrane;2.03939799362116e-08!GO:0015986;ATP synthesis coupled proton transport;2.26099195804612e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.26099195804612e-08!GO:0005798;Golgi-associated vesicle;2.44655862579902e-08!GO:0050657;nucleic acid transport;2.44655862579902e-08!GO:0051236;establishment of RNA localization;2.44655862579902e-08!GO:0050658;RNA transport;2.44655862579902e-08!GO:0006446;regulation of translational initiation;3.32126941031319e-08!GO:0003743;translation initiation factor activity;3.95320197138591e-08!GO:0044432;endoplasmic reticulum part;5.70794971844086e-08!GO:0006461;protein complex assembly;5.86701603370258e-08!GO:0016881;acid-amino acid ligase activity;7.67654810146142e-08!GO:0019222;regulation of metabolic process;7.67654810146142e-08!GO:0004386;helicase activity;8.19452328141992e-08!GO:0005643;nuclear pore;8.89078708986981e-08!GO:0044453;nuclear membrane part;8.91330930408614e-08!GO:0015934;large ribosomal subunit;9.9591439883106e-08!GO:0050789;regulation of biological process;1.17729304563156e-07!GO:0006413;translational initiation;1.31700391057929e-07!GO:0042623;ATPase activity, coupled;1.3681046710722e-07!GO:0000139;Golgi membrane;2.77625481510671e-07!GO:0030135;coated vesicle;2.82588056784546e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;2.98059076152107e-07!GO:0006366;transcription from RNA polymerase II promoter;3.22383904933085e-07!GO:0019899;enzyme binding;5.30838000218608e-07!GO:0015630;microtubule cytoskeleton;6.01265313967409e-07!GO:0048523;negative regulation of cellular process;6.87418294509425e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.60620403636596e-07!GO:0030133;transport vesicle;7.99428815924991e-07!GO:0051028;mRNA transport;8.37157988336499e-07!GO:0006323;DNA packaging;9.94418618917461e-07!GO:0017038;protein import;1.22587681602808e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.28654612629597e-06!GO:0006754;ATP biosynthetic process;1.32673366253442e-06!GO:0006753;nucleoside phosphate metabolic process;1.32673366253442e-06!GO:0005793;ER-Golgi intermediate compartment;1.379338046755e-06!GO:0044440;endosomal part;1.53254816847958e-06!GO:0010008;endosome membrane;1.53254816847958e-06!GO:0003714;transcription corepressor activity;1.7286538565999e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.78421340101372e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.78421340101372e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.90845121152063e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.09196628544378e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.22495113090104e-06!GO:0016310;phosphorylation;2.26875918603293e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.36213172360095e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.36213172360095e-06!GO:0006164;purine nucleotide biosynthetic process;2.60385468478429e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.60385468478429e-06!GO:0003924;GTPase activity;2.65167994011738e-06!GO:0008026;ATP-dependent helicase activity;2.72114953525012e-06!GO:0006163;purine nucleotide metabolic process;3.27586528417151e-06!GO:0009150;purine ribonucleotide metabolic process;3.5753346662597e-06!GO:0006350;transcription;3.6018930767433e-06!GO:0000151;ubiquitin ligase complex;3.70946902541441e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.79176853767858e-06!GO:0009259;ribonucleotide metabolic process;3.99291328364909e-06!GO:0051186;cofactor metabolic process;4.88675626155062e-06!GO:0006613;cotranslational protein targeting to membrane;5.05876451777471e-06!GO:0005761;mitochondrial ribosome;5.11937613010751e-06!GO:0000313;organellar ribosome;5.11937613010751e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.00236264928662e-06!GO:0009144;purine nucleoside triphosphate metabolic process;6.00236264928662e-06!GO:0005770;late endosome;6.01179405848211e-06!GO:0031323;regulation of cellular metabolic process;6.13403887037691e-06!GO:0005525;GTP binding;6.25405088678477e-06!GO:0043566;structure-specific DNA binding;6.42937423746625e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.17851642735261e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.47432682173213e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.57167997573099e-06!GO:0046034;ATP metabolic process;7.61735725369168e-06!GO:0009141;nucleoside triphosphate metabolic process;7.7806062588587e-06!GO:0007264;small GTPase mediated signal transduction;8.92960264488769e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.3484112726025e-06!GO:0031252;leading edge;1.03543555918371e-05!GO:0009260;ribonucleotide biosynthetic process;1.0382519020559e-05!GO:0032446;protein modification by small protein conjugation;1.21241364617303e-05!GO:0005083;small GTPase regulator activity;1.22072863018233e-05!GO:0005789;endoplasmic reticulum membrane;1.22246872717073e-05!GO:0016044;membrane organization and biogenesis;1.39593496515011e-05!GO:0010468;regulation of gene expression;1.40065282541639e-05!GO:0046930;pore complex;1.45172597107455e-05!GO:0045333;cellular respiration;1.55655195671766e-05!GO:0000245;spliceosome assembly;1.65667898750429e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.65667898750429e-05!GO:0048471;perinuclear region of cytoplasm;1.86971612268153e-05!GO:0051170;nuclear import;1.97604394970028e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.12953590840746e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.12953590840746e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.12953590840746e-05!GO:0009060;aerobic respiration;2.47618385772039e-05!GO:0051276;chromosome organization and biogenesis;2.66013747750081e-05!GO:0006606;protein import into nucleus;2.72904302056962e-05!GO:0030118;clathrin coat;2.75381531630257e-05!GO:0045259;proton-transporting ATP synthase complex;2.76889342293943e-05!GO:0016567;protein ubiquitination;2.76889342293943e-05!GO:0048519;negative regulation of biological process;2.87274355349891e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.95903413477816e-05!GO:0065002;intracellular protein transport across a membrane;3.1395106977952e-05!GO:0006974;response to DNA damage stimulus;3.1395106977952e-05!GO:0032561;guanyl ribonucleotide binding;3.19004301709151e-05!GO:0019001;guanyl nucleotide binding;3.19004301709151e-05!GO:0006732;coenzyme metabolic process;3.38637009829809e-05!GO:0032774;RNA biosynthetic process;4.31218518821526e-05!GO:0043038;amino acid activation;4.41123728229042e-05!GO:0006418;tRNA aminoacylation for protein translation;4.41123728229042e-05!GO:0043039;tRNA aminoacylation;4.41123728229042e-05!GO:0030658;transport vesicle membrane;4.44804870215467e-05!GO:0008092;cytoskeletal protein binding;4.5725622793699e-05!GO:0006351;transcription, DNA-dependent;4.62587786676607e-05!GO:0051168;nuclear export;4.9526211242387e-05!GO:0009055;electron carrier activity;5.03026466236861e-05!GO:0030695;GTPase regulator activity;5.28017088553001e-05!GO:0012501;programmed cell death;5.94688564427918e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.08896133896245e-05!GO:0006612;protein targeting to membrane;6.19070010439032e-05!GO:0006915;apoptosis;7.08381079847269e-05!GO:0009892;negative regulation of metabolic process;7.32973905106031e-05!GO:0005773;vacuole;7.44891060894227e-05!GO:0031324;negative regulation of cellular metabolic process;7.76736233154079e-05!GO:0031072;heat shock protein binding;7.84760741376761e-05!GO:0003713;transcription coactivator activity;7.89015389791774e-05!GO:0065007;biological regulation;8.1795709017788e-05!GO:0003724;RNA helicase activity;8.1795709017788e-05!GO:0008270;zinc ion binding;0.00011447177104368!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000124548011843595!GO:0008219;cell death;0.000127208412558491!GO:0016265;death;0.000127208412558491!GO:0015631;tubulin binding;0.000140149683494708!GO:0006891;intra-Golgi vesicle-mediated transport;0.000153002182217575!GO:0016481;negative regulation of transcription;0.000163319530102331!GO:0006892;post-Golgi vesicle-mediated transport;0.000193917368178541!GO:0030660;Golgi-associated vesicle membrane;0.000194372536669847!GO:0006399;tRNA metabolic process;0.000201329811416136!GO:0045449;regulation of transcription;0.000210403950175616!GO:0043069;negative regulation of programmed cell death;0.000210541832444437!GO:0051188;cofactor biosynthetic process;0.000217710994470938!GO:0009056;catabolic process;0.000221891608588847!GO:0008654;phospholipid biosynthetic process;0.000237864327102645!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000237864327102645!GO:0015399;primary active transmembrane transporter activity;0.000237864327102645!GO:0022406;membrane docking;0.000237864327102645!GO:0048278;vesicle docking;0.000237864327102645!GO:0005769;early endosome;0.000242093233685306!GO:0005874;microtubule;0.000248587084771576!GO:0003697;single-stranded DNA binding;0.000262152705161325!GO:0008287;protein serine/threonine phosphatase complex;0.000279815119998492!GO:0043066;negative regulation of apoptosis;0.000282938721999188!GO:0006281;DNA repair;0.00028469689111163!GO:0009108;coenzyme biosynthetic process;0.00032591760609516!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000339259146481225!GO:0042254;ribosome biogenesis and assembly;0.000345223373694209!GO:0006897;endocytosis;0.000351218880607967!GO:0010324;membrane invagination;0.000351218880607967!GO:0016740;transferase activity;0.00036372065824185!GO:0005813;centrosome;0.000371422356622801!GO:0006904;vesicle docking during exocytosis;0.000390067838337306!GO:0006402;mRNA catabolic process;0.000396259646366254!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000403424780477982!GO:0005667;transcription factor complex;0.000406779994326859!GO:0006355;regulation of transcription, DNA-dependent;0.000409636582376555!GO:0006916;anti-apoptosis;0.000416494465570943!GO:0006099;tricarboxylic acid cycle;0.00043296664800604!GO:0046356;acetyl-CoA catabolic process;0.00043296664800604!GO:0003729;mRNA binding;0.00043867127752474!GO:0043623;cellular protein complex assembly;0.000451215228342216!GO:0051246;regulation of protein metabolic process;0.000460935315738762!GO:0030134;ER to Golgi transport vesicle;0.000492623632119629!GO:0004674;protein serine/threonine kinase activity;0.000515085752781323!GO:0030137;COPI-coated vesicle;0.000572109564729074!GO:0030532;small nuclear ribonucleoprotein complex;0.000632577212023684!GO:0051789;response to protein stimulus;0.000644239604230774!GO:0006986;response to unfolded protein;0.000644239604230774!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000649966931528353!GO:0030867;rough endoplasmic reticulum membrane;0.000681406495199194!GO:0016859;cis-trans isomerase activity;0.000683704350633412!GO:0000323;lytic vacuole;0.000687926405127034!GO:0005764;lysosome;0.000687926405127034!GO:0048500;signal recognition particle;0.000698975952948563!GO:0008250;oligosaccharyl transferase complex;0.000749876471912133!GO:0006752;group transfer coenzyme metabolic process;0.000761644441692351!GO:0008017;microtubule binding;0.000777112606816451!GO:0043492;ATPase activity, coupled to movement of substances;0.000784265343192941!GO:0030127;COPII vesicle coat;0.000811462813032092!GO:0012507;ER to Golgi transport vesicle membrane;0.000811462813032092!GO:0051427;hormone receptor binding;0.000860393219980321!GO:0003690;double-stranded DNA binding;0.000870211331415597!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000870848902981517!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000938785721821888!GO:0016363;nuclear matrix;0.000971823460478051!GO:0005815;microtubule organizing center;0.00106891014824091!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00110919694457123!GO:0016197;endosome transport;0.0011497201351024!GO:0030036;actin cytoskeleton organization and biogenesis;0.00134197418280361!GO:0006084;acetyl-CoA metabolic process;0.00135554098306661!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00150473305859057!GO:0005905;coated pit;0.00153496699786547!GO:0019783;small conjugating protein-specific protease activity;0.00154903261057638!GO:0035257;nuclear hormone receptor binding;0.00155766705987564!GO:0016791;phosphoric monoester hydrolase activity;0.0016208633787887!GO:0009109;coenzyme catabolic process;0.00172410393127629!GO:0043021;ribonucleoprotein binding;0.00173768147549505!GO:0051920;peroxiredoxin activity;0.00178147324904463!GO:0016301;kinase activity;0.00180846297761559!GO:0004576;oligosaccharyl transferase activity;0.00183533148963214!GO:0045786;negative regulation of progression through cell cycle;0.00185750937543908!GO:0005774;vacuolar membrane;0.0018889583882688!GO:0031628;opioid receptor binding;0.00189323289745006!GO:0031852;mu-type opioid receptor binding;0.00189323289745006!GO:0006607;NLS-bearing substrate import into nucleus;0.0019089263558309!GO:0004221;ubiquitin thiolesterase activity;0.00191877387124003!GO:0016563;transcription activator activity;0.0019362789530608!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00193873338745324!GO:0045047;protein targeting to ER;0.00193873338745324!GO:0030663;COPI coated vesicle membrane;0.00193873338745324!GO:0030126;COPI vesicle coat;0.00193873338745324!GO:0009719;response to endogenous stimulus;0.0019651851404863!GO:0005788;endoplasmic reticulum lumen;0.0019651851404863!GO:0008186;RNA-dependent ATPase activity;0.00200888712665401!GO:0005048;signal sequence binding;0.00200888712665401!GO:0004843;ubiquitin-specific protease activity;0.00201622293542156!GO:0000059;protein import into nucleus, docking;0.00214022439631237!GO:0005839;proteasome core complex (sensu Eukaryota);0.00226184114327584!GO:0004721;phosphoprotein phosphatase activity;0.00235581826274998!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00238225436008031!GO:0033673;negative regulation of kinase activity;0.00242737334278842!GO:0006469;negative regulation of protein kinase activity;0.00242737334278842!GO:0046914;transition metal ion binding;0.00246146568189116!GO:0012506;vesicle membrane;0.0026251990631223!GO:0045892;negative regulation of transcription, DNA-dependent;0.00268970100493529!GO:0051087;chaperone binding;0.00284878081366971!GO:0051128;regulation of cellular component organization and biogenesis;0.00326311914413904!GO:0007049;cell cycle;0.00340228859402976!GO:0004298;threonine endopeptidase activity;0.00367933191506089!GO:0030119;AP-type membrane coat adaptor complex;0.00391443848186066!GO:0030027;lamellipodium;0.00396057290775303!GO:0008312;7S RNA binding;0.00403966791588732!GO:0006414;translational elongation;0.004068757431054!GO:0031902;late endosome membrane;0.00413102699274759!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00413102699274759!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00413102699274759!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00413102699274759!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00414984182875751!GO:0016311;dephosphorylation;0.00428721767321013!GO:0030384;phosphoinositide metabolic process;0.00461438590211838!GO:0006383;transcription from RNA polymerase III promoter;0.00464555990577232!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0047840431976712!GO:0031124;mRNA 3'-end processing;0.0047840431976712!GO:0006401;RNA catabolic process;0.00482189913761389!GO:0051187;cofactor catabolic process;0.00503929103947522!GO:0008047;enzyme activator activity;0.00514115284602426!GO:0022890;inorganic cation transmembrane transporter activity;0.00528555163572491!GO:0044433;cytoplasmic vesicle part;0.00529863109493336!GO:0005791;rough endoplasmic reticulum;0.00542411036111326!GO:0030029;actin filament-based process;0.00558115555776718!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00558115555776718!GO:0030131;clathrin adaptor complex;0.00570122249736868!GO:0004004;ATP-dependent RNA helicase activity;0.0057020692526453!GO:0046489;phosphoinositide biosynthetic process;0.00596596748337835!GO:0030136;clathrin-coated vesicle;0.00629870319997365!GO:0008601;protein phosphatase type 2A regulator activity;0.00635980423082433!GO:0005096;GTPase activator activity;0.00654029792398648!GO:0007265;Ras protein signal transduction;0.00657127501601661!GO:0043087;regulation of GTPase activity;0.00683500467884124!GO:0016050;vesicle organization and biogenesis;0.00711048127937313!GO:0044437;vacuolar part;0.00743831804110937!GO:0050811;GABA receptor binding;0.00747704632094317!GO:0031123;RNA 3'-end processing;0.00751650571935102!GO:0005765;lysosomal membrane;0.00786905933306972!GO:0006611;protein export from nucleus;0.00788371689241154!GO:0008286;insulin receptor signaling pathway;0.00792805512199181!GO:0016072;rRNA metabolic process;0.00797584739025476!GO:0048489;synaptic vesicle transport;0.00801760098197278!GO:0005875;microtubule associated complex;0.00814734087565609!GO:0008361;regulation of cell size;0.00818111138959761!GO:0030140;trans-Golgi network transport vesicle;0.00846374838482938!GO:0003711;transcription elongation regulator activity;0.00852380114222904!GO:0030659;cytoplasmic vesicle membrane;0.00858326060276845!GO:0051348;negative regulation of transferase activity;0.00862871618091476!GO:0006405;RNA export from nucleus;0.00873347333408707!GO:0006364;rRNA processing;0.00874093215487062!GO:0046903;secretion;0.00876051494142305!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00885583964676566!GO:0003702;RNA polymerase II transcription factor activity;0.00904665185243875!GO:0046467;membrane lipid biosynthetic process;0.00904665185243875!GO:0018196;peptidyl-asparagine modification;0.00904814722128529!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00904814722128529!GO:0000209;protein polyubiquitination;0.00925608055109723!GO:0030521;androgen receptor signaling pathway;0.00927234774605752!GO:0015980;energy derivation by oxidation of organic compounds;0.00966504513945286!GO:0007010;cytoskeleton organization and biogenesis;0.00997476834327249!GO:0051252;regulation of RNA metabolic process;0.0104135797287704!GO:0004860;protein kinase inhibitor activity;0.0104661643930603!GO:0016790;thiolester hydrolase activity;0.0104661643930603!GO:0000118;histone deacetylase complex;0.0106178362033598!GO:0042026;protein refolding;0.0107180647406892!GO:0031625;ubiquitin protein ligase binding;0.0107455962020264!GO:0008139;nuclear localization sequence binding;0.0113020382027971!GO:0000159;protein phosphatase type 2A complex;0.0116626125648292!GO:0035258;steroid hormone receptor binding;0.0120332695337319!GO:0030518;steroid hormone receptor signaling pathway;0.0120332695337319!GO:0019887;protein kinase regulator activity;0.0120332695337319!GO:0030125;clathrin vesicle coat;0.0122556446156341!GO:0030665;clathrin coated vesicle membrane;0.0122556446156341!GO:0016251;general RNA polymerase II transcription factor activity;0.0122556446156341!GO:0006810;transport;0.0122556446156341!GO:0033116;ER-Golgi intermediate compartment membrane;0.0122749318038551!GO:0006470;protein amino acid dephosphorylation;0.0124372970240874!GO:0006650;glycerophospholipid metabolic process;0.0124784913570612!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0125451263602789!GO:0006818;hydrogen transport;0.0128725309753973!GO:0016049;cell growth;0.013018553817514!GO:0007243;protein kinase cascade;0.0132549808389513!GO:0005869;dynactin complex;0.0145670812947311!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0151285092259004!GO:0016779;nucleotidyltransferase activity;0.0151285092259004!GO:0008154;actin polymerization and/or depolymerization;0.0151285092259004!GO:0015992;proton transport;0.015492882312795!GO:0005099;Ras GTPase activator activity;0.0157078799850531!GO:0001558;regulation of cell growth;0.0157788861090481!GO:0000049;tRNA binding;0.0160035175162623!GO:0007004;telomere maintenance via telomerase;0.0160919227202456!GO:0001726;ruffle;0.0160919227202456!GO:0016853;isomerase activity;0.0162405342762562!GO:0046474;glycerophospholipid biosynthetic process;0.0163770413247429!GO:0006352;transcription initiation;0.0165712713367437!GO:0006378;mRNA polyadenylation;0.016652998687649!GO:0003746;translation elongation factor activity;0.0167084771985252!GO:0016585;chromatin remodeling complex;0.0175316218987598!GO:0007030;Golgi organization and biogenesis;0.0175316218987598!GO:0007242;intracellular signaling cascade;0.0178597661465101!GO:0048487;beta-tubulin binding;0.0181964949368129!GO:0043067;regulation of programmed cell death;0.0184306474075642!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0184306474075642!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0184306474075642!GO:0005868;cytoplasmic dynein complex;0.0186098978049297!GO:0016615;malate dehydrogenase activity;0.0187575364671829!GO:0000314;organellar small ribosomal subunit;0.0195255155783465!GO:0005763;mitochondrial small ribosomal subunit;0.0195255155783465!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0198583087008857!GO:0008022;protein C-terminus binding;0.020079080383232!GO:0005885;Arp2/3 protein complex;0.0201074180104843!GO:0006376;mRNA splice site selection;0.0201351699757764!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0201351699757764!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0202954319545124!GO:0042981;regulation of apoptosis;0.0209200485220303!GO:0004722;protein serine/threonine phosphatase activity;0.0211651510236424!GO:0045893;positive regulation of transcription, DNA-dependent;0.0212823279521543!GO:0006333;chromatin assembly or disassembly;0.0221106142206543!GO:0031901;early endosome membrane;0.0231251609540458!GO:0030132;clathrin coat of coated pit;0.0235752271086402!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0240001414204176!GO:0032200;telomere organization and biogenesis;0.0240001414204176!GO:0000723;telomere maintenance;0.0240001414204176!GO:0008234;cysteine-type peptidase activity;0.0246781206090654!GO:0006338;chromatin remodeling;0.0252858844184725!GO:0047485;protein N-terminus binding;0.0260905517151797!GO:0051726;regulation of cell cycle;0.0263968370260147!GO:0003779;actin binding;0.026485279742408!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0266909229677342!GO:0007005;mitochondrion organization and biogenesis;0.0267250397100215!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0267819554217399!GO:0008097;5S rRNA binding;0.0273361906244995!GO:0000074;regulation of progression through cell cycle;0.0275605840118982!GO:0000781;chromosome, telomeric region;0.0284803952721239!GO:0050681;androgen receptor binding;0.0285319086875369!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0300161863344031!GO:0005938;cell cortex;0.0308408896298291!GO:0008180;signalosome;0.0314286263745045!GO:0019207;kinase regulator activity;0.032040315318114!GO:0006661;phosphatidylinositol biosynthetic process;0.0322519276241088!GO:0030880;RNA polymerase complex;0.0323576548215432!GO:0030176;integral to endoplasmic reticulum membrane;0.0325932366588054!GO:0031461;cullin-RING ubiquitin ligase complex;0.0329425120364627!GO:0051056;regulation of small GTPase mediated signal transduction;0.0334471642611802!GO:0035035;histone acetyltransferase binding;0.0352511456717054!GO:0000287;magnesium ion binding;0.0358384886304074!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0362596204559926!GO:0015002;heme-copper terminal oxidase activity;0.0362596204559926!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0362596204559926!GO:0004129;cytochrome-c oxidase activity;0.0362596204559926!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0366311092315464!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0366311092315464!GO:0012510;trans-Golgi network transport vesicle membrane;0.0366311092315464!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0391200419199763!GO:0006595;polyamine metabolic process;0.0397119020798086!GO:0043631;RNA polyadenylation;0.0402823018941549!GO:0009117;nucleotide metabolic process;0.0409594322397387!GO:0005802;trans-Golgi network;0.0414349207783024!GO:0035034;histone acetyltransferase regulator activity;0.0417307988758582!GO:0006108;malate metabolic process;0.0419410815426076!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0420632145056206!GO:0043488;regulation of mRNA stability;0.0420632145056206!GO:0043487;regulation of RNA stability;0.0420632145056206!GO:0006984;ER-nuclear signaling pathway;0.0421367326894795!GO:0019902;phosphatase binding;0.042236780664525!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0422510294159883!GO:0005832;chaperonin-containing T-complex;0.0427027536970117!GO:0007034;vacuolar transport;0.0427863887483829!GO:0019210;kinase inhibitor activity;0.042812345543733!GO:0005741;mitochondrial outer membrane;0.0430339331493354!GO:0030569;chymotrypsin inhibitor activity;0.0433600596336351!GO:0016579;protein deubiquitination;0.0442057421610641!GO:0019208;phosphatase regulator activity;0.0442513286831624!GO:0048245;eosinophil chemotaxis;0.0442598655586495!GO:0005784;translocon complex;0.0475748904085957!GO:0030427;site of polarized growth;0.048174905173427!GO:0065009;regulation of a molecular function;0.0493107870737761!GO:0019867;outer membrane;0.0495356232713268
|sample_id=10162
|sample_id=10162
|sample_note=
|sample_note=

Revision as of 20:22, 25 June 2012


Name:pituitary gland, adult, donor10252
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuepituitary gland
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0891
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.177
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.372
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.467
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus1.105
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.163
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0534
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0891
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0195
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0.84
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0891
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0851
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.343
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.205
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.19
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.316
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.047
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.158
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.163
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.33
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0891
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0546
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.163
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0891
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.163
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.576
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0891
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.163
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.163
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.0891
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.45
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12229

Jaspar motifP-value
MA0002.20.00742
MA0003.10.229
MA0004.10.455
MA0006.10.414
MA0007.10.682
MA0009.10.824
MA0014.10.828
MA0017.10.0117
MA0018.20.00627
MA0019.10.948
MA0024.10.934
MA0025.10.0492
MA0027.10.0929
MA0028.10.546
MA0029.10.291
MA0030.10.0111
MA0031.10.35
MA0035.20.0476
MA0038.10.114
MA0039.20.875
MA0040.10.855
MA0041.10.978
MA0042.10.598
MA0043.19.78425e-4
MA0046.10.587
MA0047.20.501
MA0048.10.115
MA0050.10.602
MA0051.10.81
MA0052.10.436
MA0055.10.0639
MA0057.10.4
MA0058.10.437
MA0059.10.0388
MA0060.10.313
MA0061.10.00459
MA0062.20.617
MA0065.28.34784e-5
MA0066.10.0316
MA0067.10.656
MA0068.10.331
MA0069.10.821
MA0070.10.634
MA0071.10.0647
MA0072.10.81
MA0073.10.442
MA0074.10.0901
MA0076.10.0917
MA0077.10.88
MA0078.10.14
MA0079.20.59
MA0080.27.31671e-7
MA0081.10.258
MA0083.10.00285
MA0084.10.526
MA0087.10.171
MA0088.10.494
MA0090.10.459
MA0091.10.651
MA0092.10.126
MA0093.10.513
MA0099.22.15298e-11
MA0100.10.48
MA0101.10.0129
MA0102.20.182
MA0103.10.506
MA0104.20.353
MA0105.12.59279e-4
MA0106.10.0493
MA0107.10.0102
MA0108.20.624
MA0111.10.681
MA0112.21.34979e-4
MA0113.10.996
MA0114.10.00602
MA0115.10.555
MA0116.10.0023
MA0117.10.842
MA0119.10.0266
MA0122.10.303
MA0124.10.654
MA0125.10.0898
MA0131.10.641
MA0135.10.0588
MA0136.10.00126
MA0137.20.0213
MA0138.20.487
MA0139.10.309
MA0140.10.00387
MA0141.10.00941
MA0142.10.684
MA0143.10.27
MA0144.10.995
MA0145.10.191
MA0146.10.0543
MA0147.10.202
MA0148.10.261
MA0149.10.0125
MA0150.10.00985
MA0152.10.797
MA0153.10.871
MA0154.10.00716
MA0155.10.29
MA0156.10.0845
MA0157.10.957
MA0159.10.0399
MA0160.10.0387
MA0162.10.0777
MA0163.12.06095e-6
MA0164.10.558
MA0258.10.0041
MA0259.10.622



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12229

Novel motifP-value
10.064
100.0594
1000.413
1010.685
1020.917
1030.102
1040.207
1050.807
1060.00122
1070.01
1080.393
1090.0148
110.0187
1100.0967
1110.0664
1120.487
1130.625
1140.0757
1150.642
1160.0675
1170.0675
1180.296
1190.0608
120.992
1200.138
1210.806
1220.605
1230.771
1240.704
1250.0583
1260.25
1270.322
1280.0305
1290.242
130.016
1300.34
1310.413
1320.888
1330.277
1340.559
1350.278
1360.174
1370.156
1380.735
1390.299
140.925
1400.694
1410.738
1420.294
1430.0322
1440.426
1450.0874
1460.451
1470.654
1480.0054
1490.125
150.116
1500.19
1510.508
1520.0575
1530.873
1540.891
1550.983
1560.77
1570.452
1580.0923
1590.0153
160.108
1600.0522
1610.337
1620.899
1630.753
1640.145
1650.245
1660.964
1670.911
1680.122
1690.00743
170.0467
180.0693
190.144
20.68
200.652
210.0816
220.148
230.0834
240.212
250.733
260.00383
270.459
280.793
290.0341
30.113
300.836
310.769
320.00886
330.156
340.496
350.395
360.0943
370.0639
380.194
390.188
40.758
400.065
410.192
420.381
430.102
440.0407
450.659
460.0424
470.0997
480.0951
490.147
50.372
500.332
510.285
520.194
530.94
540.33
550.651
560.558
570.203
580.507
590.0309
60.587
600.0301
610.166
620.176
630.0574
640.187
650.081
660.362
670.309
680.945
690.216
70.172
700.0365
710.0271
720.767
730.0621
740.282
750.0733
760.601
770.118
780.0212
790.374
80.0321
800.862
810.254
820.258
830.152
840.496
850.0474
860.305
870.00305
880.667
890.254
90.328
900.0906
910.523
920.447
930.792
940.114
950.0576
960.459
970.884
980.261
990.289



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12229


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000922 (embryo)
0000955 (brain)
0000007 (pituitary gland)
0001894 (diencephalon)
0000483 (epithelium)
0002530 (gland)
0000033 (head)
0000479 (tissue)
0002346 (neurectoderm)
0002368 (endocrine gland)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0000073 (regional part of nervous system)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000025 (tube)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0002616 (regional part of brain)
0001062 (anatomical entity)
0000119 (cell layer)
0005291 (embryonic tissue)
0002780 (regional part of forebrain)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0001017 (central nervous system)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0001890 (forebrain)
0000949 (endocrine system)
0003075 (neural plate)
0003056 (pre-chordal neural plate)
0001049 (neural tube)
0006238 (future brain)
0006601 (presumptive ectoderm)
0005068 (neural rod)
0006241 (future spinal cord)
0003080 (anterior neural tube)
0006240 (future forebrain)
0006222 (future diencephalon)
0007284 (presumptive neural plate)
0007135 (neural keel)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10162-103A9&oldid=1834850"