Personal tools

FF:12236-129G4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 36: Line 36:
|has_quality=
|has_quality=
|id=FF:12236-129G4
|id=FF:12236-129G4
|is_a=EFO:0002091;;FF:0000002;;FF:0000010;;FF:0000210
|is_a=EFO:0002091;;FF:0000010
|is_obsolete=
|name=amniotic membrane cells, donor2
|name=amniotic membrane cells, donor2
|namespace=
|namespace=
Line 77: Line 78:
|sample_tissue=amnion
|sample_tissue=amnion
|top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356
|top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356
|xref=
}}
}}

Revision as of 00:06, 28 June 2012


Name:amniotic membrane cells, donor2
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineNA
companyNA
collaborationHiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.278
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.297
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.1
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0446
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.269
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0516
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.659
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0992
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.277
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.34
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.2
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.113
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.565
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.202
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.202
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0351
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.421
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0836
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.301
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.63
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.221
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.113
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0.34
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.312
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12503

Jaspar motifP-value
MA0002.20.0562
MA0003.10.987
MA0004.10.965
MA0006.10.0681
MA0007.10.591
MA0009.10.371
MA0014.10.0419
MA0017.10.0996
MA0018.20.415
MA0019.10.0518
MA0024.19.70052e-7
MA0025.10.975
MA0027.10.863
MA0028.10.307
MA0029.10.671
MA0030.10.756
MA0031.10.839
MA0035.20.468
MA0038.10.0267
MA0039.20.00376
MA0040.10.833
MA0041.10.408
MA0042.10.829
MA0043.10.353
MA0046.10.561
MA0047.20.538
MA0048.10.177
MA0050.18.13848e-4
MA0051.10.0192
MA0052.10.41
MA0055.10.161
MA0057.10.532
MA0058.10.999
MA0059.10.0726
MA0060.13.42858e-5
MA0061.10.015
MA0062.20.764
MA0065.20.195
MA0066.10.684
MA0067.10.09
MA0068.10.0267
MA0069.10.867
MA0070.10.694
MA0071.10.258
MA0072.10.754
MA0073.10.527
MA0074.10.533
MA0076.10.636
MA0077.10.41
MA0078.10.233
MA0079.20.0803
MA0080.21.99845e-4
MA0081.10.095
MA0083.10.0352
MA0084.10.18
MA0087.10.451
MA0088.10.431
MA0090.12.99206e-6
MA0091.10.351
MA0092.10.226
MA0093.10.902
MA0099.20.0686
MA0100.10.643
MA0101.10.149
MA0102.20.668
MA0103.10.00568
MA0104.20.00323
MA0105.10.00304
MA0106.10.23
MA0107.10.0753
MA0108.20.00181
MA0111.10.903
MA0112.20.454
MA0113.10.778
MA0114.10.262
MA0115.10.112
MA0116.10.0182
MA0117.10.298
MA0119.10.0751
MA0122.10.546
MA0124.10.364
MA0125.10.0901
MA0131.10.694
MA0135.10.707
MA0136.10.0219
MA0137.20.0921
MA0138.20.513
MA0139.10.0856
MA0140.10.659
MA0141.10.00447
MA0142.10.492
MA0143.10.457
MA0144.10.665
MA0145.10.913
MA0146.10.0846
MA0147.10.00446
MA0148.10.497
MA0149.10.276
MA0150.10.114
MA0152.10.301
MA0153.10.705
MA0154.10.168
MA0155.10.632
MA0156.10.0808
MA0157.10.904
MA0159.10.269
MA0160.10.336
MA0162.10.473
MA0163.10.0338
MA0164.10.593
MA0258.10.0173
MA0259.10.356



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12503

Novel motifP-value
10.0729
100.51
1000.678
1010.593
1020.978
1030.666
1040.588
1050.282
1060.049
1070.339
1080.379
1090.326
110.26
1100.505
1110.236
1120.423
1130.00476
1140.0618
1150.752
1160.122
1170.521
1180.317
1190.284
120.729
1200.345
1210.365
1220.493
1237.62243e-4
1240.0167
1250.793
1260.883
1270.887
1280.0345
1290.625
130.789
1300.949
1310.00781
1320.906
1330.977
1340.0274
1350.908
1360.00903
1370.291
1380.132
1390.00545
140.81
1400.903
1410.433
1420.103
1430.303
1440.864
1450.735
1460.0175
1470.157
1480.305
1490.98
150.802
1500.789
1510.968
1520.0649
1530.224
1540.223
1550.213
1560.429
1570.249
1580.509
1590.92
160.382
1600.945
1610.675
1620.453
1630.365
1640.943
1650.569
1660.827
1670.547
1680.43
1690.331
170.858
180.188
190.278
20.691
200.236
210.105
220.323
230.32
240.523
250.815
260.241
270.29
280.833
290.117
30.94
300.177
310.837
320.648
330.782
340.611
350.0126
360.0359
370.0384
380.424
390.372
40.852
400.974
410.292
420.789
430.234
440.529
450.176
460.0584
470.115
480.718
490.0623
50.89
500.725
510.771
520.752
530.094
540.941
550.329
560.971
570.617
580.278
590.777
60.808
600.068
610.986
620.224
630.147
640.887
650.257
660.761
670.367
680.21
690.368
70.811
700.136
710.252
720.643
730.264
740.0853
750.624
760.93
770.812
780.198
790.596
80.207
800.414
810.0162
820.052
830.802
840.49
850.118
860.0424
870.626
880.976
890.865
90.809
900.834
910.998
920.251
930.945
940.872
950.491
960.351
970.135
980.202
990.93



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12503


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0000034 (stem cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000305 (amnion)
0002384 (connective tissue)
0000926 (mesoderm)
0000479 (tissue)
0000064 (organ part)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0004923 (organ component layer)
0005423 (developing anatomical structure)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0005291 (embryonic tissue)
0006598 (presumptive structure)
0000158 (membranous layer)
0002532 (epiblast (generic))
0000924 (ectoderm)
0003081 (lateral plate mesoderm)
0004871 (somatic layer of lateral plate mesoderm)
0006601 (presumptive ectoderm)
0006603 (presumptive mesoderm)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:12236-129G4&oldid=1841374"