FF:11667-122G2: Difference between revisions
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase=1 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.91!80.49!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.78!293.20!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!1.77!71.86!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.76!56.77!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.72!219.90!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!1.58!160.25!TOX2;;chr20:42543506..42543549,+!p2@TOX2!1.50!71.14!TOX2;;chr18:19749541..19749557,+!p1@GATA6!1.48!88.39!GATA6;;chr12:54402745..54402788,+!p1@HOXC8!1.46!28.03!HOXC8;;chr11:46299539..46299620,+!p2@CREB3L1!1.45!45.27!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.45!38.09!GATA6;;chr17:46622070..46622109,-!p1@HOXB2!1.39!51.74!HOXB2;;chr5:92919100..92919135,+!p3@NR2F1!1.38!28.03!NR2F1;;chr17:1959369..1959388,+!p2@HIC1!1.37!58.21!HIC1;;chr17:46682321..46682362,-!p1@HOXB6!1.37!22.28!HOXB6;;chr12:54393880..54393962,+!p1@HOXC9!1.37!22.28!HOXC9;;chr17:46622114..46622138,-!p4@HOXB2!1.35!32.34!HOXB2;;chr8:72756267..72756296,-!p4@MSC!1.35!30.90!MSC;;chr10:101292684..101292706,+!p1@NKX2-3!1.35!21.56!NKX2-3;;chr8:72756063..72756125,-!p1@MSC!1.34!41.68!MSC;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.84!HIF3A;;chr17:46675420..46675465,-!p3@HOXB6!1.31!22.28!HOXB6;;chr12:54378923..54378966,+!p1@HOXC10!1.29!18.68!HOXC10;;chr17:46132044..46132080,+!p4@NFE2L1!1.28!17.97!NFE2L1;;chr19:45260775..45260838,+!p5@BCL3!1.27!23.00!BCL3;;chr12:54394309..54394336,+!p2@HOXC9!1.23!15.81!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!1.23!15.81!HOXC8;;chr8:72756213..72756243,-!p5@MSC!1.21!19.40!MSC;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.09!HAND2;;chr17:46621937..46621966,-!p2@HOXB2!1.20!40.24!HOXB2;;chr5:92920456..92920488,+!p9@NR2F1!1.20!17.25!NR2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.37!HOXC5;;chr2:239756671..239756732,+!p1@TWIST2!1.17!44.55!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!1.17!15.09!NR2F1;;chr8:72756667..72756736,-!p2@MSC!1.16!20.84!MSC;;chr21:47063625..47063658,+!p1@PCBP3!1.15!57.49!PCBP3;;chr2:119604456..119604501,-!p2@EN1!1.14!12.94!EN1;;chr8:49833948..49833973,-!p2@SNAI2!1.13!78.33!SNAI2;;chr5:92919375..92919438,+!p6@NR2F1!1.13!13.65!NR2F1;;chr7:19157248..19157268,-!p1@TWIST1!1.11!33.06!TWIST1;;chr8:72756637..72756664,-!p3@MSC!1.11!13.65!MSC;;chr14:75894714..75894733,+!p1@JDP2!1.10!329.13!JDP2;;chr11:46299186..46299195,+!p3@CREB3L1!1.10!12.94!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.50!HOXA9;;chr1:221053049..221053075,+!p3@HLX!1.07!18.68!HLX;;chr19:45261550..45261641,+!p6@BCL3!1.07!17.97!BCL3;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.78!HOXB9;;chr16:31076332..31076388,-!p3@ZNF668!1.04!10.06!ZNF668;;chr17:46675558..46675577,-!p2@HOXB6!1.04!10.06!HOXB6;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.06!HOXD8;;chr9:35732647..35732678,+!p2@CREB3!1.03!54.61!CREB3;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.34!NR2F1;;chr17:38498594..38498661,+!p2@RARA!1.01!31.62!RARA;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.50!KLF15;;chr12:54402729..54402743,+!p3@HOXC8!1.01!9.34!HOXC8;;chr17:59477233..59477263,+!p1@TBX2!1.00!28.74!TBX2;;chr11:47279504..47279563,+!p1@NR1H3!1.00!20.84!NR1H3;;chr19:50432453..50432468,+!p1@ATF5!0.99!506.63!ATF5;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.09!TWIST2;;chr4:174451370..174451387,-!p1@HAND2!0.98!8.62!HAND2;;chr11:46299443..46299459,+!p4@CREB3L1!0.98!8.62!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.62!HOXC10;;chr17:46667594..46667619,-!p1@HOXB3!0.98!8.62!HOXB3;;chr17:1958388..1958404,+!p1@HIC1!0.97!54.61!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.97!38.81!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.97!21.56!TWIST1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!173.19!SNAI2;;chr3:126076264..126076305,-!p2@KLF15!0.96!11.50!KLF15;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.95!82.64!GLIS2;;chr15:67430351..67430366,+!p10@SMAD3!0.95!7.90!SMAD3;;chr17:46667628..46667642,-!p2@HOXB3!0.95!7.90!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.95!7.90!HOXB8;;chr12:54410948..54410992,+!p3@HOXC5!0.95!7.90!HOXC5;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.90!HOXA3;;chr5:131826457..131826514,-!p1@IRF1!0.94!314.75!IRF1;;chr15:96874244..96874259,+!p5@NR2F2!0.94!19.40!NR2F2;;chr6:45390077..45390105,+!p9@RUNX2!0.94!10.06!RUNX2;;chr9:77112244..77112262,+!p1@RORB!0.94!8.62!RORB;;chr15:96873984..96873999,+!p3@NR2F2!0.93!57.49!NR2F2;;chr19:45252008..45252024,+!p2@BCL3!0.93!25.87!BCL3;;chr18:19749517..19749531,+!p3@GATA6!0.91!12.94!GATA6;;chr17:46675469..46675481,-!p4@HOXB6!0.91!7.19!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.19!HOXB8;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.19!EBF2;;chr1:8484142..8484232,-!p10@RERE!0.90!19.40!RERE;;chr1:221052776..221052799,+!p1@HLX!0.90!12.94!HLX;;chr8:72756023..72756055,-!p6@MSC!0.90!8.62!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.89!214.15!HMGA1;;chr2:19558373..19558392,-!p1@OSR1!0.89!19.40!OSR1;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.78!ZFP64;;chr15:96874012..96874042,+!p2@NR2F2!0.88!63.24!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!0.88!12.94!NR2F2;;chr19:13134457..13134462,+!p5@NFIX!0.88!12.22!NFIX;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.34!HOXB7;;chr5:92919068..92919082,+!p5@NR2F1!0.88!7.90!NR2F1;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!66.83!NFKBIE;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.81!DRAP1;;chr1:8483878..8483907,-!p4@RERE!0.87!25.87!RERE;;chr11:65686802..65686818,+!p6@DRAP1!0.87!11.50!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.87!10.06!ETV4;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.47!FOXL1;;chr17:46675539..46675551,-!p7@HOXB6!0.87!6.47!HOXB6;;chr20:42602000..42602034,+!p5@TOX2!0.87!6.47!TOX2;;chr12:54422217..54422239,+!p3@HOXC6!0.87!6.47!HOXC6;;chr8:72755987..72756002,-!p7@MSC!0.87!6.47!MSC;;chr7:44143925..44143970,+!p1@AEBP1!0.86!146.60!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!0.86!14.37!GLI2;;chr15:83953397..83953425,-!p1@BNC1!0.86!7.19!BNC1;;chr8:48650715..48650735,-!p1@CEBPD!0.85!818.51!CEBPD;;chr6:34204672..34204692,+!p1@HMGA1!0.85!736.58!HMGA1;;chr10:104155480..104155534,+!p2@NFKB2!0.85!41.68!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.34!ETV4;;chr17:46126136..46126152,+!p1@NFE2L1!0.84!324.10!NFE2L1;;chrX:106960285..106960299,-!p1@TSC22D3!0.83!166.72!TSC22D3;;chr15:96876966..96877017,+!p12@NR2F2!0.83!8.62!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.83!7.90!HOXB2;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.75!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!0.83!5.75!NPAS1;;chr1:204042233..204042249,+!p1@SOX13!0.82!38.09!SOX13;;chr4:57522166..57522260,-!p2@HOPX!0.82!6.47!HOPX;;chr12:53614115..53614154,-!p1@RARG!0.81!31.62!RARG;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.47!HOXB2;;chr6:34204642..34204664,+!p2@HMGA1!0.79!752.39!HMGA1;;chr19:3366570..3366619,+!p1@NFIC!0.79!181.81!NFIC;;chr5:92918860..92918871,+!p10@NR2F1!0.79!5.75!NR2F1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!395.96!TAX1BP3;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.75!NR1H3;;chr12:54447637..54447659,+!p4@HOXC4!0.78!5.03!HOXC4;;chr2:113994526..113994556,-!p3@PAX8!0.78!5.03!PAX8;;chr2:177001290..177001315,+!p1@HOXD3!0.78!5.03!HOXD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.78!5.03!SEBOX;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.03!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.78!5.03!HOXB9;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.03!MAFK;;chr19:13106214..13106382,+!p1@NFIX!0.77!125.76!NFIX;;chr2:28616337..28616355,+!p2@FOSL2!0.77!96.29!FOSL2;;chr8:128748308..128748324,+!p2@MYC!0.76!144.44!MYC;;chr19:45251943..45252006,+!p1@BCL3!0.76!140.13!BCL3;;chr20:48807875..48807982,+!p2@CEBPB!0.76!116.42!CEBPB;;chr17:17740330..17740349,-!p3@SREBF1!0.75!33.78!SREBF1;;chr17:41623009..41623053,-!p4@ETV4!0.75!7.90!ETV4;;chr11:113930291..113930339,+!p2@ZBTB16!0.75!7.90!ZBTB16;;chr2:74730430..74730451,-!p1@LBX2!0.75!7.90!LBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!5.03!GLIS1;;chr8:37553292..37553317,+!p1@ZNF703!0.74!118.57!ZNF703;;chr20:48807351..48807384,+!p1@CEBPB!0.73!501.60!CEBPB;;chr8:128749984..128750033,+!p4@MYC!0.73!17.25!MYC;;chr19:36134528..36134563,+!p1@ETV2!0.73!13.65!ETV2;;chr17:61919985..61920012,-!p3@SMARCD2!0.73!11.50!SMARCD2;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.31!HOXB6;;chr18:19749353..19749367,+!p4@GATA6!0.73!4.31!GATA6;;chr5:92919312..92919334,+!p13@NR2F1!0.73!4.31!NR2F1;;chr7:27213893..27213954,-!p1@HOXA10!0.73!4.31!HOXA10;;chr8:72756380..72756427,-!p8@MSC!0.73!4.31!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.31!RUNX1T1;;chr1:221053444..221053473,+!p8@HLX!0.73!4.31!HLX;;chr2:119605214..119605230,-!p1@EN1!0.73!4.31!EN1;;chr2:176987441..176987454,+!p1@HOXD9!0.73!4.31!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.73!4.31!HOXD8;;chr12:54380036..54380091,+!p4@HOXC10!0.73!4.31!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.73!4.31!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.73!4.31!HOXC8;;chrX:48900871..48900890,-!p1@TFE3!0.72!247.92!TFE3;;chr15:96873921..96873946,+!p1@NR2F2!0.72!135.10!NR2F2;;chr19:45504688..45504782,+!p1@RELB!0.72!28.74!RELB;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.56!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.72!20.12!DRAP1;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.47!ZBTB16;;chr17:46622229..46622257,-!p6@HOXB2!0.72!5.03!HOXB2;;chr6:34205372..34205412,+!p5@HMGA1!0.71!23.71!HMGA1;;chr11:65667884..65667895,-!p2@FOSL1!0.71!17.97!FOSL1;;chr20:39946361..39946379,-!p2@ZHX3!0.71!13.65!ZHX3;;chr19:56152332..56152347,+!p4@ZNF580!0.71!10.06!ZNF580;;chr1:8483849..8483868,-!p14@RERE!0.71!7.19!RERE;;chr2:121493492..121493537,+!p2@GLI2!0.71!7.19!GLI2;;chr19:3366625..3366629,+!p4@NFIC!0.71!6.47!NFIC;;chr1:221052840..221052875,+!p4@HLX!0.71!5.03!HLX;;chr1:221052994..221053008,+!p6@HLX!0.71!5.03!HLX;;chr3:52001448..52001478,-!p2@PCBP4!0.70!63.96!PCBP4;;chrX:106960180..106960197,-!p2@TSC22D3!0.70!17.25!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.70!9.34!SMARCD3;;chrX:107018969..107019024,-!p6@TSC22D3!0.70!5.75!TSC22D3;;chrX:47509928..47509990,-!p1@ELK1!0.69!136.54!ELK1;;chr17:61920023..61920110,-!p1@SMARCD2!0.69!63.24!SMARCD2;;chr5:321810..321877,+!p1@AHRR!0.69!13.65!AHRR;;chr22:38598057..38598071,+!p3@MAFF!0.6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| |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.91!80.49!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.78!293.20!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!1.77!71.86!FOXF1;;chr6:134210243..134210257,+!p1@TCF21!1.76!56.77!TCF21;;chr5:92918919..92918942,+!p1@NR2F1!1.72!219.90!NR2F1;;chr20:42543441..42543497,+!p1@TOX2!1.58!160.25!TOX2;;chr20:42543506..42543549,+!p2@TOX2!1.50!71.14!TOX2;;chr18:19749541..19749557,+!p1@GATA6!1.48!88.39!GATA6;;chr12:54402745..54402788,+!p1@HOXC8!1.46!28.03!HOXC8;;chr11:46299539..46299620,+!p2@CREB3L1!1.45!45.27!CREB3L1;;chr18:19749386..19749404,+!p2@GATA6!1.45!38.09!GATA6;;chr17:46622070..46622109,-!p1@HOXB2!1.39!51.74!HOXB2;;chr5:92919100..92919135,+!p3@NR2F1!1.38!28.03!NR2F1;;chr17:1959369..1959388,+!p2@HIC1!1.37!58.21!HIC1;;chr17:46682321..46682362,-!p1@HOXB6!1.37!22.28!HOXB6;;chr12:54393880..54393962,+!p1@HOXC9!1.37!22.28!HOXC9;;chr17:46622114..46622138,-!p4@HOXB2!1.35!32.34!HOXB2;;chr8:72756267..72756296,-!p4@MSC!1.35!30.90!MSC;;chr10:101292684..101292706,+!p1@NKX2-3!1.35!21.56!NKX2-3;;chr8:72756063..72756125,-!p1@MSC!1.34!41.68!MSC;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.84!HIF3A;;chr17:46675420..46675465,-!p3@HOXB6!1.31!22.28!HOXB6;;chr12:54378923..54378966,+!p1@HOXC10!1.29!18.68!HOXC10;;chr17:46132044..46132080,+!p4@NFE2L1!1.28!17.97!NFE2L1;;chr19:45260775..45260838,+!p5@BCL3!1.27!23.00!BCL3;;chr12:54394309..54394336,+!p2@HOXC9!1.23!15.81!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!1.23!15.81!HOXC8;;chr8:72756213..72756243,-!p5@MSC!1.21!19.40!MSC;;chr4:174450089..174450153,-!p2@HAND2!1.21!15.09!HAND2;;chr17:46621937..46621966,-!p2@HOXB2!1.20!40.24!HOXB2;;chr5:92920456..92920488,+!p9@NR2F1!1.20!17.25!NR2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.37!HOXC5;;chr2:239756671..239756732,+!p1@TWIST2!1.17!44.55!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!1.17!15.09!NR2F1;;chr8:72756667..72756736,-!p2@MSC!1.16!20.84!MSC;;chr21:47063625..47063658,+!p1@PCBP3!1.15!57.49!PCBP3;;chr2:119604456..119604501,-!p2@EN1!1.14!12.94!EN1;;chr8:49833948..49833973,-!p2@SNAI2!1.13!78.33!SNAI2;;chr5:92919375..92919438,+!p6@NR2F1!1.13!13.65!NR2F1;;chr7:19157248..19157268,-!p1@TWIST1!1.11!33.06!TWIST1;;chr8:72756637..72756664,-!p3@MSC!1.11!13.65!MSC;;chr14:75894714..75894733,+!p1@JDP2!1.10!329.13!JDP2;;chr11:46299186..46299195,+!p3@CREB3L1!1.10!12.94!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.10!11.50!HOXA9;;chr1:221053049..221053075,+!p3@HLX!1.07!18.68!HLX;;chr19:45261550..45261641,+!p6@BCL3!1.07!17.97!BCL3;;chr17:46703687..46703740,-!p1@HOXB9!1.07!10.78!HOXB9;;chr16:31076332..31076388,-!p3@ZNF668!1.04!10.06!ZNF668;;chr17:46675558..46675577,-!p2@HOXB6!1.04!10.06!HOXB6;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.06!HOXD8;;chr9:35732647..35732678,+!p2@CREB3!1.03!54.61!CREB3;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.34!NR2F1;;chr17:38498594..38498661,+!p2@RARA!1.01!31.62!RARA;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.50!KLF15;;chr12:54402729..54402743,+!p3@HOXC8!1.01!9.34!HOXC8;;chr17:59477233..59477263,+!p1@TBX2!1.00!28.74!TBX2;;chr11:47279504..47279563,+!p1@NR1H3!1.00!20.84!NR1H3;;chr19:50432453..50432468,+!p1@ATF5!0.99!506.63!ATF5;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.09!TWIST2;;chr4:174451370..174451387,-!p1@HAND2!0.98!8.62!HAND2;;chr11:46299443..46299459,+!p4@CREB3L1!0.98!8.62!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.62!HOXC10;;chr17:46667594..46667619,-!p1@HOXB3!0.98!8.62!HOXB3;;chr17:1958388..1958404,+!p1@HIC1!0.97!54.61!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.97!38.81!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.97!21.56!TWIST1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!173.19!SNAI2;;chr3:126076264..126076305,-!p2@KLF15!0.96!11.50!KLF15;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.95!82.64!GLIS2;;chr15:67430351..67430366,+!p10@SMAD3!0.95!7.90!SMAD3;;chr17:46667628..46667642,-!p2@HOXB3!0.95!7.90!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.95!7.90!HOXB8;;chr12:54410948..54410992,+!p3@HOXC5!0.95!7.90!HOXC5;;chr7:27192185..27192209,-!p1@HOXA3!0.95!7.90!HOXA3;;chr5:131826457..131826514,-!p1@IRF1!0.94!314.75!IRF1;;chr15:96874244..96874259,+!p5@NR2F2!0.94!19.40!NR2F2;;chr6:45390077..45390105,+!p9@RUNX2!0.94!10.06!RUNX2;;chr9:77112244..77112262,+!p1@RORB!0.94!8.62!RORB;;chr15:96873984..96873999,+!p3@NR2F2!0.93!57.49!NR2F2;;chr19:45252008..45252024,+!p2@BCL3!0.93!25.87!BCL3;;chr18:19749517..19749531,+!p3@GATA6!0.91!12.94!GATA6;;chr17:46675469..46675481,-!p4@HOXB6!0.91!7.19!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.19!HOXB8;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.19!EBF2;;chr1:8484142..8484232,-!p10@RERE!0.90!19.40!RERE;;chr1:221052776..221052799,+!p1@HLX!0.90!12.94!HLX;;chr8:72756023..72756055,-!p6@MSC!0.90!8.62!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.89!214.15!HMGA1;;chr2:19558373..19558392,-!p1@OSR1!0.89!19.40!OSR1;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.78!ZFP64;;chr15:96874012..96874042,+!p2@NR2F2!0.88!63.24!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!0.88!12.94!NR2F2;;chr19:13134457..13134462,+!p5@NFIX!0.88!12.22!NFIX;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.34!HOXB7;;chr5:92919068..92919082,+!p5@NR2F1!0.88!7.90!NR2F1;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!66.83!NFKBIE;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.81!DRAP1;;chr1:8483878..8483907,-!p4@RERE!0.87!25.87!RERE;;chr11:65686802..65686818,+!p6@DRAP1!0.87!11.50!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.87!10.06!ETV4;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.47!FOXL1;;chr17:46675539..46675551,-!p7@HOXB6!0.87!6.47!HOXB6;;chr20:42602000..42602034,+!p5@TOX2!0.87!6.47!TOX2;;chr12:54422217..54422239,+!p3@HOXC6!0.87!6.47!HOXC6;;chr8:72755987..72756002,-!p7@MSC!0.87!6.47!MSC;;chr7:44143925..44143970,+!p1@AEBP1!0.86!146.60!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!0.86!14.37!GLI2;;chr15:83953397..83953425,-!p1@BNC1!0.86!7.19!BNC1;;chr8:48650715..48650735,-!p1@CEBPD!0.85!818.51!CEBPD;;chr6:34204672..34204692,+!p1@HMGA1!0.85!736.58!HMGA1;;chr10:104155480..104155534,+!p2@NFKB2!0.85!41.68!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.34!ETV4;;chr17:46126136..46126152,+!p1@NFE2L1!0.84!324.10!NFE2L1;;chrX:106960285..106960299,-!p1@TSC22D3!0.83!166.72!TSC22D3;;chr15:96876966..96877017,+!p12@NR2F2!0.83!8.62!NR2F2;;chr17:46621101..46621143,-!p7@HOXB2!0.83!7.90!HOXB2;;chr5:92919452..92919496,+!p11@NR2F1!0.83!5.75!NR2F1;;chr19:47523058..47523114,+!p1@NPAS1!0.83!5.75!NPAS1;;chr1:204042233..204042249,+!p1@SOX13!0.82!38.09!SOX13;;chr4:57522166..57522260,-!p2@HOPX!0.82!6.47!HOPX;;chr12:53614115..53614154,-!p1@RARG!0.81!31.62!RARG;;chr17:46622205..46622218,-!p3@HOXB2!0.81!6.47!HOXB2;;chr6:34204642..34204664,+!p2@HMGA1!0.79!752.39!HMGA1;;chr19:3366570..3366619,+!p1@NFIC!0.79!181.81!NFIC;;chr5:92918860..92918871,+!p10@NR2F1!0.79!5.75!NR2F1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!395.96!TAX1BP3;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.75!NR1H3;;chr12:54447637..54447659,+!p4@HOXC4!0.78!5.03!HOXC4;;chr2:113994526..113994556,-!p3@PAX8!0.78!5.03!PAX8;;chr2:177001290..177001315,+!p1@HOXD3!0.78!5.03!HOXD3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.78!5.03!SEBOX;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.03!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.78!5.03!HOXB9;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.03!MAFK;;chr19:13106214..13106382,+!p1@NFIX!0.77!125.76!NFIX;;chr2:28616337..28616355,+!p2@FOSL2!0.77!96.29!FOSL2;;chr8:128748308..128748324,+!p2@MYC!0.76!144.44!MYC;;chr19:45251943..45252006,+!p1@BCL3!0.76!140.13!BCL3;;chr20:48807875..48807982,+!p2@CEBPB!0.76!116.42!CEBPB;;chr17:17740330..17740349,-!p3@SREBF1!0.75!33.78!SREBF1;;chr17:41623009..41623053,-!p4@ETV4!0.75!7.90!ETV4;;chr11:113930291..113930339,+!p2@ZBTB16!0.75!7.90!ZBTB16;;chr2:74730430..74730451,-!p1@LBX2!0.75!7.90!LBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!5.03!GLIS1;;chr8:37553292..37553317,+!p1@ZNF703!0.74!118.57!ZNF703;;chr20:48807351..48807384,+!p1@CEBPB!0.73!501.60!CEBPB;;chr8:128749984..128750033,+!p4@MYC!0.73!17.25!MYC;;chr19:36134528..36134563,+!p1@ETV2!0.73!13.65!ETV2;;chr17:61919985..61920012,-!p3@SMARCD2!0.73!11.50!SMARCD2;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.31!HOXB6;;chr18:19749353..19749367,+!p4@GATA6!0.73!4.31!GATA6;;chr5:92919312..92919334,+!p13@NR2F1!0.73!4.31!NR2F1;;chr7:27213893..27213954,-!p1@HOXA10!0.73!4.31!HOXA10;;chr8:72756380..72756427,-!p8@MSC!0.73!4.31!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.31!RUNX1T1;;chr1:221053444..221053473,+!p8@HLX!0.73!4.31!HLX;;chr2:119605214..119605230,-!p1@EN1!0.73!4.31!EN1;;chr2:176987441..176987454,+!p1@HOXD9!0.73!4.31!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.73!4.31!HOXD8;;chr12:54380036..54380091,+!p4@HOXC10!0.73!4.31!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.73!4.31!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.73!4.31!HOXC8;;chrX:48900871..48900890,-!p1@TFE3!0.72!247.92!TFE3;;chr15:96873921..96873946,+!p1@NR2F2!0.72!135.10!NR2F2;;chr19:45504688..45504782,+!p1@RELB!0.72!28.74!RELB;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.56!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.72!20.12!DRAP1;;chr11:113930425..113930471,+!p1@ZBTB16!0.72!6.47!ZBTB16;;chr17:46622229..46622257,-!p6@HOXB2!0.72!5.03!HOXB2;;chr6:34205372..34205412,+!p5@HMGA1!0.71!23.71!HMGA1;;chr11:65667884..65667895,-!p2@FOSL1!0.71!17.97!FOSL1;;chr20:39946361..39946379,-!p2@ZHX3!0.71!13.65!ZHX3;;chr19:56152332..56152347,+!p4@ZNF580!0.71!10.06!ZNF580;;chr1:8483849..8483868,-!p14@RERE!0.71!7.19!RERE;;chr2:121493492..121493537,+!p2@GLI2!0.71!7.19!GLI2;;chr19:3366625..3366629,+!p4@NFIC!0.71!6.47!NFIC;;chr1:221052840..221052875,+!p4@HLX!0.71!5.03!HLX;;chr1:221052994..221053008,+!p6@HLX!0.71!5.03!HLX;;chr3:52001448..52001478,-!p2@PCBP4!0.70!63.96!PCBP4;;chrX:106960180..106960197,-!p2@TSC22D3!0.70!17.25!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.70!9.34!SMARCD3;;chrX:107018969..107019024,-!p6@TSC22D3!0.70!5.75!TSC22D3;;chrX:47509928..47509990,-!p1@ELK1!0.69!136.54!ELK1;;chr17:61920023..61920110,-!p1@SMARCD2!0.69!63.24!SMARCD2;;chr5:321810..321877,+!p1@AHRR!0.69!13.65!AHRR;;chr22:38598057..38598071,+!p3@MAFF!0.6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AFF1;;chr6:21597283..21597312,+!p7@SOX4!0.27!1.44!SOX4;;chr16:89940012..89940059,+!p1@TCF25!0.26!141.57!TCF25;;chr12:10875831..10876025,-!p1@CSDA!0.26!135.82!CSDA;;chr3:5021113..5021180,+!p1@BHLHE40!0.26!116.42!BHLHE40;;chr15:85291785..85291848,+!p1@ZNF592!0.26!29.46!ZNF592;;chr12:6798410..6798503,-!p1@ZNF384!0.26!17.25!ZNF384;;chr14:62162285..62162296,+!p3@HIF1A!0.26!7.90!HIF1A;;chr6:7108569..7108683,+!p3@RREB1!0.26!5.75!RREB1;;chr17:46125685..46125699,+!p3@NFE2L1!0.26!5.03!NFE2L1;;chr20:306051..306096,+!p3@SOX12!0.26!3.59!SOX12;;chr6:41040923..41040952,+!p2@NFYA!0.26!3.59!NFYA;;chr9:109625401..109625458,+!p1@ZNF462!0.26!3.59!ZNF462;;chr19:57106624..57106644,+!p2@ZNF71!0.26!2.87!ZNF71;;chr20:48807091..48807123,+!p7@CEBPB!0.26!2.87!CEBPB;;chr16:8962202..8962222,-!p3@CARHSP1!0.26!2.16!CARHSP1;;chr20:44600199..44600219,-!p3@ZNF335!0.26!1.44!ZNF335;;chr11:64764435..64764449,-!p1@BATF2!0.26!1.44!BATF2;;chr12:10865870..10865888,-!p6@CSDA!0.26!1.44!CSDA;;chr14:74226833..74226845,-!p7@C14orf43!0.26!1.44!C14orf43;;chr5:149380256..149380343,+!p1@HMGXB3!0.25!46.71!HMGXB3;;chr19:50169064..50169121,-!p1@IRF3!0.25!22.28!IRF3;;chr12:80084333..80084380,-!p4@PAWR!0.25!7.19!PAWR;;chr19:45251805..45251840,+!p4@BCL3!0.25!4.31!BCL3;;chr1:164528445..164528459,+!p2@PBX1!0.25!4.31!PBX1;;chr10:94449675..94449694,+!p2@HHEX!0.25!3.59!HHEX;;chr12:66218255..66218304,+!p3@HMGA2!0.25!3.59!HMGA2;;chr15:31619535..31619569,+!p5@KLF13!0.25!2.16!KLF13;;chr16:67596356..67596367,+!p5@CTCF!0.25!1.44!CTCF;;chr16:88636875..88636886,+!p3@ZC3H18!0.25!1.44!ZC3H18;;chr19:16435523..16435619,+!p2@KLF2!0.25!1.44!KLF2;;chrX:56258844..56258882,+!p1@KLF8!0.25!1.44!KLF8;;chr19:42759266..42759290,-!p1@ERF!0.24!49.58!ERF;;chr16:67876180..67876242,+!p1@THAP11!0.24!25.87!THAP11;;chr7:139762641..139762768,-!p1@PARP12!0.24!20.84!PARP12;;chr12:125052112..125052172,-!p2@NCOR2!0.24!13.65!NCOR2;;chr12:56512026..56512064,+!p1@ZC3H10,p2@ESYT1!0.24!13.65!ZC3H10;;chr6:32095968..32096032,-!p1@ATF6B!0.24!12.94!ATF6B;;chr16:3162557..3162600,+!p1@ZNF205!0.24!12.94!ZNF205;;chr1:249132512..249132547,+!p2@ZNF672!0.24!8.62!ZNF672;;chr3:150126136..150126158,+!p4@TSC22D2!0.24!5.03!TSC22D2;;chr14:21994337..21994442,-!p1@SALL2!0.24!3.59!SALL2;;chr14:24837368..24837401,+!p1@NFATC4!0.24!2.87!NFATC4;;chr11:695215..695231,-!p2@DEAF1!0.24!2.16!DEAF1;;chr12:124827609..124827643,-!p9@NCOR2!0.24!1.44!NCOR2;;chr15:57210692..57210713,-!p5@ZNF280D!0.24!1.44!ZNF280D;;chr1:42800614..42800649,-!p5@FOXJ3!0.24!1.44!FOXJ3;;chr19:38270528..38270545,-!p2@ZNF573!0.24!0.72!ZNF573;;chr19:38714830..38714845,-!p5@DPF1!0.24!0.72!DPF1;;chr19:38714847..38714878,-!p3@DPF1!0.24!0.72!DPF1;;chr19:38720356..38720369,-!p4@DPF1!0.24!0.72!DPF1;;chr19:45254481..45254495,+!p13@BCL3!0.24!0.72!BCL3;;chr19:45973107..45973118,+!p15@FOSB!0.24!0.72!FOSB;;chr19:46843663..46843674,+!p8@HIF3A!0.24!0.72!HIF3A;;chr19:47523040..47523049,+!p3@NPAS1!0.24!0.72!NPAS1;;chr19:47538560..47538591,+!p2@NPAS1!0.24!0.72!NPAS1;;chr19:47910182..47910187,-!p3@MEIS3!0.24!0.72!MEIS3;;chr19:49140658..49140667,-!p8@DBP!0.24!0.72!DBP;;chr19:50435673..50435690,+!p8@ATF5!0.24!0.72!ATF5;;chr19:54024313..54024361,+!p7@ZNF331!0.24!0.72!ZNF331;;chr19:58545454..58545498,+!p1@ZSCAN1!0.24!0.72!ZSCAN1;;chr19:58790361..58790372,+!p2@ZNF8!0.24!0.72!ZNF8;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.24!0.72!ZNF177;;chr19:9732460..9732472,-!p2@ZNF561!0.24!0.72!ZNF561;;chr1:156460436..156460462,-!p7@MEF2D!0.24!0.72!MEF2D;;chr1:164528866..164528877,+!p12@PBX1!0.24!0.72!PBX1;;chr1:170632137..170632172,+!p10@PRRX1!0.24!0.72!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.24!0.72!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.24!0.72!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.24!0.72!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.24!0.72!PRRX1;;chr1:173837572..173837581,+!p3@ZBTB37!0.24!0.72!ZBTB37;;chr1:212873200..212873230,-!p5@BATF3!0.24!0.72!BATF3;;chr1:37947257..37947292,+!p4@ZC3H12A!0.24!0.72!ZC3H12A;;chr1:40105299..40105326,-!p1@HEYL!0.24!0.72!HEYL;;chr1:8586084..8586100,-!p20@RERE!0.24!0.72!RERE;;chr20:42544761..42544775,+!p6@TOX2!0.24!0.72!TOX2;;chr20:50808639..50808661,-!p6@ZFP64!0.24!0.72!ZFP64;;chr20:51589133..51589159,+!p2@TSHZ2!0.24!0.72!TSHZ2;;chr20:61493191..61493209,-!p2@TCFL5!0.24!0.72!TCFL5;;chr20:62680671..62680679,-!p2@SOX18!0.24!0.72!SOX18;;chr21:36260325..36260341,-!p14@RUNX1!0.24!0.72!RUNX1;;chr21:36421401..36421414,-!p16@RUNX1!0.24!0.72!RUNX1;;chr10:101292731..101292741,+!p2@NKX2-3!0.24!0.72!NKX2-3;;chr10:101292921..101292931,+!p4@NKX2-3!0.24!0.72!NKX2-3;;chr10:114886551..114886601,+!p11@TCF7L2!0.24!0.72!TCF7L2;;chr10:131762589..131762601,-!p3@EBF3!0.24!0.72!EBF3;;chr10:31607335..31607354,+!p5@ZEB1!0.24!0.72!ZEB1;;chr10:8097321..8097348,+!p4@GATA3!0.24!0.72!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.24!0.72!PKNOX2;;chr11:128457446..128457461,-!p4@ETS1!0.24!0.72!ETS1;;chr11:47279167..47279178,+!p10@NR1H3!0.24!0.72!NR1H3;;chr11:65430617..65430624,-!p8@RELA!0.24!0.72!RELA;;chr11:65668011..65668020,-!p3@FOSL1!0.24!0.72!FOSL1;;chr11:65688877..65688891,+!p13@DRAP1!0.24!0.72!DRAP1;;chr11:8040739..8040815,+!p4@TUB!0.24!0.72!TUB;;chr11:85393886..85393913,-!p3@CREBZF!0.24!0.72!CREBZF;;chr12:100867653..100867677,+!p2@NR1H4!0.24!0.72!NR1H4;;chr12:10870927..10870966,-!p5@CSDA!0.24!0.72!CSDA;;chr12:51158359..51158395,+!p4@ATF1!0.24!0.72!ATF1;;chr12:51611583..51611612,-!p4@POU6F1!0.24!0.72!POU6F1;;chr12:53613935..53613947,-!p8@RARG!0.24!0.72!RARG;;chr12:53625846..53625861,-!p6@RARG!0.24!0.72!RARG;;chr12:54366975..54367001,+!p1@HOXC11!0.24!0.72!HOXC11;;chr12:54379011..54379016,+!p15@HOXC10!0.24!0.72!HOXC10;;chr12:54379066..54379073,+!p11@HOXC10!0.24!0.72!HOXC10;;chr12:54379745..54379749,+!p6@HOXC5!0.24!0.72!HOXC5;;chr12:54384370..54384382,+!p5@HOXC6!0.24!0.72!HOXC6;;chr12:54426831..54426836,+!p10@HOXC5!0.24!0.72!HOXC5;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.24!0.72!HOXC6;;chr12:54694807..54694832,-!p3@NFE2!0.24!0.72!NFE2;;chr12:56414851..56414871,+!p6@IKZF4!0.24!0.72!IKZF4;;chr12:57504069..57504090,-!p7@STAT6!0.24!0.72!STAT6;;chr12:57914700..57914737,+!p7@MBD6!0.24!0.72!MBD6;;chr12:57914742..57914754,+!p14@MBD6!0.24!0.72!MBD6;;chr12:80084120..80084136,-!p15@PAWR!0.24!0.72!PAWR;;chr12:96588425..96588432,+!p8@ELK3!0.24!0.72!ELK3;;chr13:37494342..37494348,-!p7@SMAD9!0.24!0.72!SMAD9;;chr13:37494391..37494406,-!p5@SMAD9!0.24!0.72!SMAD9;;chr13:41635806..41635828,-!p14@ELF1!0.24!0.72!ELF1;;chr13:45048471..45048482,-!p54@TSC22D1!0.24!0.72!TSC22D1;;chr14:21567009..21567025,-!p9@ZNF219!0.24!0.72!ZNF219;;chr14:29235961..29236008,+!p1@FOXG1!0.24!0.72!FOXG1;;chr14:29236169..29236216,+!p6@FOXG1!0.24!0.72!FOXG1;;chr14:29236510..29236521,+!p9@FOXG1!0.24!0.72!FOXG1;;chr14:35874077..35874091,-!p8@NFKBIA!0.24!0.72!NFKBIA;;chr14:35874125..35874149,-!p11@NFKBIA!0.24!0.72!NFKBIA;;chr5:124082548..124082571,-!p9@ZNF608!0.24!0.72!ZNF608;;chr5:133450506..133450513,+!p6@TCF7!0.24!0.72!TCF7;;chr5:134369879..134369898,-!p2@PITX1!0.24!0.72!PITX1;;chr5:134369973..134369984,-!p3@PITX1!0.24!0.72!PITX1;;chr5:139494422..139494433,+!p12@PURA!0.24!0.72!PURA;;chr5:158140039..158140051,-!p12@EBF1!0.24!0.72!EBF1;;chr5:158524625..158524669,-!p6@EBF1!0.24!0.72!EBF1;;chr5:158527104..158527135,-!p4@EBF1!0.24!0.72!EBF1;;chr5:92918789..92918800,+!p12@NR2F1!0.24!0.72!NR2F1;;chr5:92919194..92919204,+!p16@NR2F1!0.24!0.72!NR2F1;;chr5:92920495..92920506,+!p19@NR2F1!0.24!0.72!NR2F1;;chr5:92920517..92920532,+!p15@NR2F1!0.24!0.72!NR2F1;;chr5:92923160..92923166,+!p23@NR2F1!0.24!0.72!NR2F1;;chr6:1389824..1389840,+!p3@FOXF2!0.24!0.72!FOXF2;;chr6:1389871..1389876,+!p4@FOXF2!0.24!0.72!FOXF2;;chr6:1389989..1390019,+!p2@FOXF2!0.24!0.72!FOXF2;;chr6:1612200..1612213,+!p9@FOXC1!0.24!0.72!FOXC1;;chr6:35454312..35454323,-!p9@TEAD3!0.24!0.72!TEAD3;;chr6:41701557..41701578,-!p3@TFEB!0.24!0.72!TFEB;;chr6:44233244..44233248,-!p3@NFKBIE!0.24!0.72!NFKBIE;;chr6:45389985..45389996,+!p18@RUNX2!0.24!0.72!RUNX2;;chr6:45390399..45390418,+!p15@RUNX2!0.24!0.72!RUNX2;;chr6:85473227..85473243,-!p5@TBX18!0.24!0.72!TBX18;;chr7:100076646..100076657,-!p10@TSC22D4!0.24!0.72!TSC22D4;;chr7:101460882..101460923,+!p5@CUX1!0.24!0.72!CUX1;;chr7:108209925..108209941,-!p2@THAP5!0.24!0.72!THAP5;;chr7:14029004..14029017,-!p8@ETV1!0.24!0.72!ETV1;;chr7:149158187..149158210,-!p2@ZNF777!0.24!0.72!ZNF777;;chr7:150102756..150102772,+!p5@ZNF775!0.24!0.72!ZNF775;;chr7:1577952..1577963,+!p8@MAFK!0.24!0.72!MAFK;;chr7:27135568..27135590,-!p2@HOXA1!0.24!0.72!HOXA1;;chr7:27153428..27153440,-!p3@HOXA3!0.24!0.72!HOXA3;; 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Revision as of 16:03, 29 June 2012
Name: | Fibroblast - Lymphatic, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12118
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12118
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.56 |
10 | 10 | 0.848 |
100 | 100 | 0.821 |
101 | 101 | 0.533 |
102 | 102 | 0.844 |
103 | 103 | 0.262 |
104 | 104 | 0.211 |
105 | 105 | 0.326 |
106 | 106 | 0.0237 |
107 | 107 | 0.0346 |
108 | 108 | 0.296 |
109 | 109 | 0.0495 |
11 | 11 | 0.0424 |
110 | 110 | 0.239 |
111 | 111 | 0.792 |
112 | 112 | 0.378 |
113 | 113 | 0.327 |
114 | 114 | 0.346 |
115 | 115 | 0.0484 |
116 | 116 | 0.059 |
117 | 117 | 0.51 |
118 | 118 | 0.808 |
119 | 119 | 0.314 |
12 | 12 | 0.44 |
120 | 120 | 0.716 |
121 | 121 | 0.927 |
122 | 122 | 0.881 |
123 | 123 | 0.316 |
124 | 124 | 0.956 |
125 | 125 | 0.371 |
126 | 126 | 0.747 |
127 | 127 | 0.132 |
128 | 128 | 0.0864 |
129 | 129 | 0.102 |
13 | 13 | 0.833 |
130 | 130 | 0.186 |
131 | 131 | 0.573 |
132 | 132 | 0.315 |
133 | 133 | 0.942 |
134 | 134 | 0.118 |
135 | 135 | 0.262 |
136 | 136 | 0.659 |
137 | 137 | 0.218 |
138 | 138 | 0.567 |
139 | 139 | 0.115 |
14 | 14 | 0.814 |
140 | 140 | 0.29 |
141 | 141 | 0.385 |
142 | 142 | 0.487 |
143 | 143 | 0.00912 |
144 | 144 | 0.97 |
145 | 145 | 0.2 |
146 | 146 | 0.292 |
147 | 147 | 0.201 |
148 | 148 | 0.619 |
149 | 149 | 0.0113 |
15 | 15 | 0.62 |
150 | 150 | 0.24 |
151 | 151 | 0.245 |
152 | 152 | 0.0407 |
153 | 153 | 0.559 |
154 | 154 | 0.595 |
155 | 155 | 0.647 |
156 | 156 | 0.764 |
157 | 157 | 0.0975 |
158 | 158 | 0.176 |
159 | 159 | 0.793 |
16 | 16 | 0.0882 |
160 | 160 | 0.0451 |
161 | 161 | 0.379 |
162 | 162 | 0.111 |
163 | 163 | 0.455 |
164 | 164 | 0.497 |
165 | 165 | 0.152 |
166 | 166 | 0.414 |
167 | 167 | 0.124 |
168 | 168 | 0.623 |
169 | 169 | 0.0266 |
17 | 17 | 0.106 |
18 | 18 | 0.0246 |
19 | 19 | 0.0757 |
2 | 2 | 0.183 |
20 | 20 | 0.407 |
21 | 21 | 0.207 |
22 | 22 | 0.0924 |
23 | 23 | 0.172 |
24 | 24 | 0.655 |
25 | 25 | 0.476 |
26 | 26 | 0.0864 |
27 | 27 | 0.138 |
28 | 28 | 0.251 |
29 | 29 | 0.608 |
3 | 3 | 0.39 |
30 | 30 | 0.218 |
31 | 31 | 0.325 |
32 | 32 | 1.44809e-8 |
33 | 33 | 0.438 |
34 | 34 | 0.161 |
35 | 35 | 0.842 |
36 | 36 | 0.882 |
37 | 37 | 0.166 |
38 | 38 | 0.409 |
39 | 39 | 0.258 |
4 | 4 | 0.604 |
40 | 40 | 0.0755 |
41 | 41 | 0.651 |
42 | 42 | 0.74 |
43 | 43 | 0.157 |
44 | 44 | 0.478 |
45 | 45 | 0.312 |
46 | 46 | 0.162 |
47 | 47 | 0.422 |
48 | 48 | 0.258 |
49 | 49 | 0.221 |
5 | 5 | 0.852 |
50 | 50 | 0.296 |
51 | 51 | 0.308 |
52 | 52 | 0.371 |
53 | 53 | 0.986 |
54 | 54 | 0.472 |
55 | 55 | 0.465 |
56 | 56 | 0.304 |
57 | 57 | 0.329 |
58 | 58 | 0.943 |
59 | 59 | 0.0178 |
6 | 6 | 0.698 |
60 | 60 | 0.162 |
61 | 61 | 0.621 |
62 | 62 | 0.842 |
63 | 63 | 0.185 |
64 | 64 | 0.15 |
65 | 65 | 0.0423 |
66 | 66 | 0.959 |
67 | 67 | 0.906 |
68 | 68 | 0.0164 |
69 | 69 | 0.279 |
7 | 7 | 0.993 |
70 | 70 | 0.0205 |
71 | 71 | 0.233 |
72 | 72 | 0.989 |
73 | 73 | 0.038 |
74 | 74 | 0.721 |
75 | 75 | 0.559 |
76 | 76 | 0.566 |
77 | 77 | 0.0171 |
78 | 78 | 0.979 |
79 | 79 | 0.0295 |
8 | 8 | 0.0636 |
80 | 80 | 0.736 |
81 | 81 | 0.496 |
82 | 82 | 0.183 |
83 | 83 | 0.649 |
84 | 84 | 0.761 |
85 | 85 | 0.0344 |
86 | 86 | 0.768 |
87 | 87 | 0.143 |
88 | 88 | 0.345 |
89 | 89 | 0.132 |
9 | 9 | 0.143 |
90 | 90 | 0.0668 |
91 | 91 | 0.281 |
92 | 92 | 0.204 |
93 | 93 | 0.989 |
94 | 94 | 0.323 |
95 | 95 | 0.152 |
96 | 96 | 0.354 |
97 | 97 | 0.516 |
98 | 98 | 0.526 |
99 | 99 | 0.0183 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12118
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000065 human fibroblast of lymphatic vessel sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000055 (non-terminally differentiated cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0000034 (stem cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002554 (fibroblast of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
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