FF:10410-106B5: Difference between revisions

Revision as of 18:52, 9 July 2012

Name:	extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	77 year old adult
sex	female
age	77
cell type	chondroblast
cell line	H-EMC-SS
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0474
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.147
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.132
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.103
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.235
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.415
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0231
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.218
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0.887
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10728

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00377
MA0003.1	MA0003.1	0.0637
MA0004.1	MA0004.1	0.0501
MA0006.1	MA0006.1	0.239
MA0007.1	MA0007.1	0.192
MA0009.1	MA0009.1	0.0275
MA0014.1	MA0014.1	0.458
MA0017.1	MA0017.1	0.00498
MA0018.2	MA0018.2	0.0079
MA0019.1	MA0019.1	0.241
MA0024.1	MA0024.1	0.101
MA0025.1	MA0025.1	0.096
MA0027.1	MA0027.1	0.294
MA0028.1	MA0028.1	0.00758
MA0029.1	MA0029.1	0.464
MA0030.1	MA0030.1	0.562
MA0031.1	MA0031.1	0.482
MA0035.2	MA0035.2	0.859
MA0038.1	MA0038.1	0.324
MA0039.2	MA0039.2	0.396
MA0040.1	MA0040.1	0.191
MA0041.1	MA0041.1	0.925
MA0042.1	MA0042.1	0.772
MA0043.1	MA0043.1	3.00391e-7
MA0046.1	MA0046.1	0.143
MA0047.2	MA0047.2	0.154
MA0048.1	MA0048.1	0.0661
MA0050.1	MA0050.1	2.41484e-8
MA0051.1	MA0051.1	3.07598e-6
MA0052.1	MA0052.1	0.341
MA0055.1	MA0055.1	0.0152
MA0057.1	MA0057.1	0.213
MA0058.1	MA0058.1	0.026
MA0059.1	MA0059.1	0.882
MA0060.1	MA0060.1	0.73
MA0061.1	MA0061.1	0.00314
MA0062.2	MA0062.2	0.0619
MA0065.2	MA0065.2	0.0113
MA0066.1	MA0066.1	0.734
MA0067.1	MA0067.1	0.763
MA0068.1	MA0068.1	0.872
MA0069.1	MA0069.1	0.636
MA0070.1	MA0070.1	0.457
MA0071.1	MA0071.1	0.576
MA0072.1	MA0072.1	0.136
MA0073.1	MA0073.1	0.306
MA0074.1	MA0074.1	0.0915
MA0076.1	MA0076.1	0.00329
MA0077.1	MA0077.1	0.563
MA0078.1	MA0078.1	0.497
MA0079.2	MA0079.2	0.187
MA0080.2	MA0080.2	1.3821e-12
MA0081.1	MA0081.1	0.0576
MA0083.1	MA0083.1	0.0121
MA0084.1	MA0084.1	0.449
MA0087.1	MA0087.1	0.472
MA0088.1	MA0088.1	0.623
MA0090.1	MA0090.1	0.64
MA0091.1	MA0091.1	0.318
MA0092.1	MA0092.1	0.0322
MA0093.1	MA0093.1	0.0244
MA0099.2	MA0099.2	1.75606e-7
MA0100.1	MA0100.1	0.265
MA0101.1	MA0101.1	0.108
MA0102.2	MA0102.2	0.0119
MA0103.1	MA0103.1	0.407
MA0104.2	MA0104.2	0.145
MA0105.1	MA0105.1	0.0178
MA0106.1	MA0106.1	0.471
MA0107.1	MA0107.1	0.0294
MA0108.2	MA0108.2	3.54889e-6
MA0111.1	MA0111.1	0.866
MA0112.2	MA0112.2	2.40834e-5
MA0113.1	MA0113.1	0.0719
MA0114.1	MA0114.1	0.191
MA0115.1	MA0115.1	0.067
MA0116.1	MA0116.1	0.161
MA0117.1	MA0117.1	0.789
MA0119.1	MA0119.1	0.169
MA0122.1	MA0122.1	0.957
MA0124.1	MA0124.1	0.238
MA0125.1	MA0125.1	0.831
MA0131.1	MA0131.1	0.0435
MA0135.1	MA0135.1	0.286
MA0136.1	MA0136.1	2.14388e-8
MA0137.2	MA0137.2	0.514
MA0138.2	MA0138.2	0.744
MA0139.1	MA0139.1	0.461
MA0140.1	MA0140.1	0.806
MA0141.1	MA0141.1	0.0532
MA0142.1	MA0142.1	0.498
MA0143.1	MA0143.1	0.864
MA0144.1	MA0144.1	0.0161
MA0145.1	MA0145.1	0.0895
MA0146.1	MA0146.1	0.82
MA0147.1	MA0147.1	0.211
MA0148.1	MA0148.1	0.498
MA0149.1	MA0149.1	0.627
MA0150.1	MA0150.1	0.00495
MA0152.1	MA0152.1	0.597
MA0153.1	MA0153.1	0.505
MA0154.1	MA0154.1	0.00623
MA0155.1	MA0155.1	0.43
MA0156.1	MA0156.1	2.03316e-5
MA0157.1	MA0157.1	0.687
MA0159.1	MA0159.1	0.101
MA0160.1	MA0160.1	0.192
MA0162.1	MA0162.1	0.0136
MA0163.1	MA0163.1	0.0678
MA0164.1	MA0164.1	0.858
MA0258.1	MA0258.1	0.0313
MA0259.1	MA0259.1	0.0963

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10728

Novel motif	Logo	P-value
1	1	0.623
10	10	0.296
100	100	0.92
101	101	0.593
102	102	0.722
103	103	0.0231
104	104	0.741
105	105	0.864
106	106	0.00123
107	107	0.00518
108	108	0.19
109	109	0.305
11	11	0.124
110	110	0.869
111	111	0.41
112	112	0.0583
113	113	0.263
114	114	0.339
115	115	0.522
116	116	0.667
117	117	0.708
118	118	0.348
119	119	0.341
12	12	0.323
120	120	0.907
121	121	0.181
122	122	0.222
123	123	0.104
124	124	0.917
125	125	0.341
126	126	0.322
127	127	0.0655
128	128	0.056
129	129	0.828
13	13	0.542
130	130	0.373
131	131	0.99
132	132	0.851
133	133	0.961
134	134	0.871
135	135	0.176
136	136	0.785
137	137	0.27
138	138	0.909
139	139	0.997
14	14	0.451
140	140	2.76837e-6
141	141	0.968
142	142	0.897
143	143	0.00623
144	144	0.887
145	145	0.196
146	146	0.501
147	147	0.802
148	148	0.00224
149	149	0.265
15	15	0.511
150	150	0.354
151	151	0.803
152	152	0.14
153	153	0.648
154	154	0.693
155	155	0.43
156	156	0.534
157	157	0.0555
158	158	0.754
159	159	0.878
16	16	0.3
160	160	0.0415
161	161	0.439
162	162	0.484
163	163	0.214
164	164	0.94
165	165	0.246
166	166	0.373
167	167	0.438
168	168	0.0959
169	169	0.0773
17	17	0.131
18	18	0.212
19	19	0.143
2	2	0.226
20	20	0.491
21	21	0.394
22	22	0.32
23	23	0.00861
24	24	0.912
25	25	0.331
26	26	0.793
27	27	0.13
28	28	0.796
29	29	0.396
3	3	0.44
30	30	0.414
31	31	0.989
32	32	0.00411
33	33	0.542
34	34	0.421
35	35	0.644
36	36	0.116
37	37	0.381
38	38	0.378
39	39	0.117
4	4	0.771
40	40	0.0364
41	41	0.0174
42	42	0.719
43	43	0.149
44	44	0.02
45	45	0.33
46	46	0.273
47	47	0.698
48	48	0.404
49	49	0.433
5	5	0.538
50	50	0.82
51	51	0.488
52	52	0.17
53	53	0.908
54	54	0.648
55	55	0.689
56	56	0.828
57	57	0.809
58	58	0.0792
59	59	0.0168
6	6	0.256
60	60	0.0333
61	61	0.95
62	62	0.0388
63	63	0.149
64	64	0.446
65	65	0.107
66	66	0.781
67	67	0.707
68	68	0.428
69	69	0.594
7	7	0.368
70	70	0.369
71	71	0.175
72	72	0.347
73	73	0.0912
74	74	0.466
75	75	0.822
76	76	0.483
77	77	0.0893
78	78	0.319
79	79	0.0173
8	8	0.319
80	80	0.967
81	81	0.309
82	82	0.0501
83	83	0.105
84	84	0.847
85	85	0.19
86	86	0.886
87	87	0.56
88	88	0.416
89	89	0.186
9	9	0.0398
90	90	0.938
91	91	0.0141
92	92	0.375
93	93	0.0806
94	94	0.301
95	95	0.367
96	96	0.259
97	97	0.981
98	98	0.612
99	99	0.584

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10728

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:6496 extraskeletal myxoid chondrosarcoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101574 chondrosarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
3371 (chondrosarcoma)
4549 (extraosseous chondrosarcoma)
5861 (myxoid chondrosarcoma)
6496 (extraskeletal myxoid chondrosarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0004755 (skeletal tissue)
0002204 (musculoskeletal system)
0001434 (skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100385 (bone cancer cell line sample)
0101574 (chondrosarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.96!921.31!LHX9;;chr7:15726296..15726315,-!p1@MEOX2!2.94!878.68!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!2.22!164.16!MEOX2;;chr1:197886772..197886790,+!p4@LHX9!2.19!153.65!LHX9;;chr21:38071430..38071456,+!p1@SIM2!2.07!116.85!SIM2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.01!101.05!PEG3;;chr3:27763807..27763822,-!p1@EOMES!2.00!98.49!EOMES;;chr7:15726176..15726191,-!p3@MEOX2!1.98!93.46!MEOX2;;chr1:197886665..197886732,+!p3@LHX9!1.97!92.58!LHX9;;chr1:197886421..197886432,+!p2@LHX9!1.95!88.43!LHX9;;chr2:239148671..239148686,-!p1@HES6!1.94!297.51!HES6;;chr13:100634031..100634045,+!p1@ZIC2!1.93!84.55!ZIC2;;chrX:591524..591527,+!p1@SHOX!1.92!81.81!SHOX;;chr20:51589133..51589159,+!p2@TSHZ2!1.91!79.61!TSHZ2;;chr7:63505799..63505904,+!p1@ZNF727!1.87!73.87!ZNF727;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.36!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!1.80!92.58!IFI16;;chr1:24645832..24645853,+!p1@GRHL3!1.80!62.22!GRHL3;;chr15:96874145..96874166,+!p7@NR2F2!1.79!113.41!NR2F2;;chr6:144329384..144329405,-!p1@PLAGL1!1.70!541.45!PLAGL1;;chr12:66218598..66218645,+!p2@HMGA2!1.69!211.81!HMGA2;;chr7:15726220..15726236,-!p4@MEOX2!1.65!43.42!MEOX2;;chr16:73093174..73093209,-!p3@ZFHX3!1.61!52.95!ZFHX3;;chr20:51589732..51589769,+!p3@TSHZ2!1.61!39.54!TSHZ2;;chr4:147560042..147560046,+!p1@POU4F2!1.58!37.07!POU4F2;;chr15:96874216..96874236,+!p13@NR2F2!1.57!55.34!NR2F2;;chr7:15726206..15726217,-!p6@MEOX2!1.54!33.54!MEOX2;;chr8:40755333..40755352,-!p1@ZMAT4!1.54!33.45!ZMAT4;;chr15:96874244..96874259,+!p5@NR2F2!1.53!77.75!NR2F2;;chr7:28448965..28448994,+!p2@CREB5!1.52!109.61!CREB5;;chr21:38071403..38071428,+!p2@SIM2!1.52!32.04!SIM2;;chr7:15726064..15726103,-!p8@MEOX2!1.51!31.42!MEOX2;;chr20:22564895..22564910,-!p1@FOXA2!1.50!30.80!FOXA2;;chr2:176994408..176994492,+!p1@HOXD8!1.46!27.89!HOXD8;;chr9:4300050..4300118,-!p1@GLIS3!1.45!169.80!GLIS3;;chr7:27196267..27196311,-!p1@HOXA7!1.44!26.74!HOXA7;;chr12:66218836..66218888,+!p1@HMGA2!1.43!233.61!HMGA2;;chr17:8027418..8027432,-!p1@HES7!1.42!25.59!HES7;;chr6:91006518..91006570,-!p1@BACH2!1.39!53.39!BACH2;;chr13:100634130..100634143,+!p3@ZIC2!1.39!23.56!ZIC2;;chr7:15725757..15725828,-!p5@MEOX2!1.36!21.98!MEOX2;;chr16:69599899..69599919,+!p2@NFAT5!1.35!237.67!NFAT5;;chr12:66218212..66218244,+!p5@HMGA2!1.35!30.98!HMGA2;;chr19:50432453..50432468,+!p1@ATF5!1.34!1117.76!ATF5;;chr21:38071462..38071474,+!p3@SIM2!1.34!20.83!SIM2;;chr1:158985553..158985574,+!p14@IFI16!1.34!20.65!IFI16;;chr8:55370487..55370503,+!p1@SOX17!1.33!20.56!SOX17;;chr6:152011654..152011682,+!p1@ESR1!1.33!20.21!ESR1;;chrX:47341928..47342010,-!p2@ZNF41!1.32!39.10!ZNF41;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.32!20.12!HOXC5;;chr15:96874012..96874042,+!p2@NR2F2!1.31!171.04!NR2F2;;chr10:35484053..35484076,+!p1@CREM!1.31!47.57!CREM;;chr7:28448995..28449011,+!p4@CREB5!1.31!26.83!CREB5;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.45!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!1.29!24.80!NR2F2;;chr2:101436564..101436647,+!p1@NPAS2!1.28!356.11!NPAS2;;chr17:70117153..70117174,+!p1@SOX9!1.27!177.39!SOX9;;chr12:66218183..66218209,+!p4@HMGA2!1.27!33.36!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!1.27!17.83!ZIC2;;chr15:96876966..96877017,+!p12@NR2F2!1.26!24.62!NR2F2;;chr11:64764435..64764449,-!p1@BATF2!1.26!23.39!BATF2;;chr20:51589107..51589120,+!p9@TSHZ2!1.26!17.03!TSHZ2;;chr6:32095523..32095564,-!p2@ATF6B!1.25!22.68!ATF6B;;chr12:24715376..24715432,-!p1@SOX5!1.25!21.27!SOX5;;chr1:158975744..158975769,+!p10@IFI16!1.25!16.86!IFI16;;chr7:15725992..15726043,-!p7@MEOX2!1.23!16.06!MEOX2;;chr13:100623375..100623425,-!p1@ZIC5!1.23!15.80!ZIC5;;chr15:96873984..96873999,+!p3@NR2F2!1.22!113.94!NR2F2;;chr6:144289132..144289134,-!p3@PLAGL1!1.22!36.45!PLAGL1;;chr20:51588873..51588953,+!p1@TSHZ2!1.22!20.48!TSHZ2;;chr15:96874063..96874074,+!p10@NR2F2!1.20!27.54!NR2F2;;chr22:19748231..19748317,+!p1@TBX1!1.20!15.00!TBX1;;chr9:3525727..3525828,-!p2@RFX3!1.19!37.07!RFX3;;chr15:96873921..96873946,+!p1@NR2F2!1.18!394.15!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.30!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!1.18!14.12!PAWR;;chr1:158985686..158985719,+!p15@IFI16!1.18!14.03!IFI16;;chr19:45260775..45260838,+!p5@BCL3!1.17!17.83!BCL3;;chr13:100638100..100638115,+!p4@ZIC2!1.17!13.68!ZIC2;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.24!TWIST1;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.45!NR2F2;;chr16:52580953..52580992,-!p2@TOX3!1.16!13.50!TOX3;;chr5:124081979..124082021,-!p7@ZNF608!1.16!13.41!ZNF608;;chr1:197886803..197886812,+!p7@LHX9!1.15!12.97!LHX9;;chr9:14314522..14314556,-!p3@NFIB!1.14!30.18!NFIB;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.33!ETV4;;chr14:21994337..21994442,-!p1@SALL2!1.13!34.68!SALL2;;chr5:124082322..124082364,-!p1@ZNF608!1.13!32.30!ZNF608;;chr4:206390..206444,+!p1@ZNF876P!1.13!22.33!ZNF876P;;chr7:137686763..137686784,-!p5@CREB3L2!1.13!21.62!CREB3L2;;chr3:141105705..141105770,+!p4@ZBTB38!1.13!15.09!ZBTB38;;chr1:244214577..244214593,+!p1@ZNF238!1.13!12.36!ZNF238;;chr2:200323414..200323455,-!p1@SATB2!1.12!26.12!SATB2;;chr12:80084167..80084197,-!p5@PAWR!1.11!27.71!PAWR;;chr12:80084279..80084293,-!p8@PAWR!1.11!19.59!PAWR;;chr1:156470861..156470868,-!p18@MEF2D!1.11!11.91!MEF2D;;chr21:38071760..38071776,+!p5@SIM2!1.11!11.91!SIM2;;chr1:24645807..24645819,+!p5@GRHL3!1.10!11.56!GRHL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.10!11.47!ZBED1;;chr7:149470641..149470694,-!p1@ZNF467!1.09!51.81!ZNF467;;chrX:129402768..129402796,-!p2@ZNF280C!1.09!35.13!ZNF280C;;chr2:177001290..177001315,+!p1@HOXD3!1.09!11.21!HOXD3;;chr1:197886646..197886657,+!p5@LHX9!1.08!11.12!LHX9;;chr3:141103634..141103665,+!p18@ZBTB38!1.07!10.68!ZBTB38;;chrX:101186981..101187030,-!p1@ZMAT1!1.06!34.86!ZMAT1;;chr15:56535468..56535521,-!p2@RFX7!1.06!19.77!RFX7;;chr12:66218573..66218596,+!p7@HMGA2!1.06!15.71!HMGA2;;chr8:81398682..81398697,+!p6@ZBTB10!1.06!13.94!ZBTB10;;chr12:66218443..66218461,+!p8@HMGA2!1.06!13.33!HMGA2;;chr7:149471046..149471070,-!p4@ZNF467!1.06!10.59!ZNF467;;chr16:52581025..52581072,-!p1@TOX3!1.06!10.59!TOX3;;chr12:54378923..54378966,+!p1@HOXC10!1.06!10.50!HOXC10;;chr12:66218923..66218934,+!p14@HMGA2!1.06!10.50!HMGA2;;chr12:10875658..10875708,-!p2@CSDA!1.05!23.65!CSDA;;chr17:41622834..41622883,-!p6@ETV4!1.05!12.36!ETV4;;chr6:126102292..126102329,+!p3@NCOA7!1.04!33.01!NCOA7;;chr20:51589792..51589811,+!p7@TSHZ2!1.04!9.97!TSHZ2;;chr5:124082470..124082483,-!p8@ZNF608!1.04!9.88!ZNF608;;chr12:80084137..80084165,-!p10@PAWR!1.03!12.62!PAWR;;chr9:14314476..14314487,-!p9@NFIB!1.03!9.62!NFIB;;chr9:14314131..14314147,-!p2@NFIB!1.02!54.28!NFIB;;chr10:118897911..118897974,-!p1@VAX1!1.02!9.44!VAX1;;chr1:2985726..2985752,+!p2@PRDM16!1.01!9.27!PRDM16;;chr9:4300016..4300039,-!p2@GLIS3!1.00!15.80!GLIS3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.00!9.00!HOXC5;;chr12:80084737..80084763,-!p3@PAWR!0.99!33.89!PAWR;;chr3:147111231..147111281,+!p3@ZIC1!0.99!8.83!ZIC1;;chr12:24715342..24715354,-!p4@SOX5!0.99!8.74!SOX5;;chr6:152011695..152011709,+!p6@ESR1!0.98!8.65!ESR1;;chr12:66218469..66218477,+!p16@HMGA2!0.98!8.47!HMGA2;;chr16:67881588..67881612,-!p2@CENPT!0.97!11.56!CENPT;;chr3:141106458..141106491,+!p20@ZBTB38!0.97!8.38!ZBTB38;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.51!NR2F1;;chr17:46806067..46806097,-!p1@HOXB13!0.96!8.21!HOXB13;;chr3:147111198..147111225,+!p4@ZIC1!0.96!8.03!ZIC1;;chr9:3525867..3525902,-!p3@RFX3!0.95!27.98!RFX3;;chr20:51589371..51589384,+!p11@TSHZ2!0.95!7.85!TSHZ2;;chr1:156470515..156470542,-!p2@MEF2D!0.93!40.51!MEF2D;;chr9:3525910..3525955,-!p4@RFX3!0.93!23.39!RFX3;;chr14:21994449..21994524,-!p2@SALL2!0.92!22.77!SALL2;;chr7:15725736..15725751,-!p9@MEOX2!0.92!7.33!MEOX2;;chr5:124082580..124082603,-!p4@ZNF608!0.91!8.12!ZNF608;;chr3:185826855..185826911,-!p1@ETV5!0.90!200.78!ETV5;;chr9:114287433..114287513,+!p1@ZNF483!0.90!18.71!ZNF483;;chr15:37390482..37390572,-!p7@MEIS2!0.90!9.71!MEIS2;;chr5:124082279..124082319,-!p3@ZNF608!0.90!8.47!ZNF608;;chr1:161736038..161736056,+!p4@ATF6!0.89!16.24!ATF6;;chr19:49139477..49139552,-!p4@DBP!0.89!8.74!DBP;;chr20:51589167..51589178,+!p14@TSHZ2!0.89!6.71!TSHZ2;;chr9:14314566..14314618,-!p1@NFIB!0.88!82.70!NFIB;;chrX:128657413..128657456,-!p2@SMARCA1!0.88!60.72!SMARCA1;;chr19:6110474..6110551,-!p1@RFX2!0.88!42.01!RFX2;;chr16:73093210..73093223,-!p13@ZFHX3!0.88!6.62!ZFHX3;;chr20:51589835..51589848,+!p5@TSHZ2!0.88!6.53!TSHZ2;;chr10:35484090..35484104,+!p6@CREM!0.88!6.53!CREM;;chr12:80084303..80084332,-!p1@PAWR!0.87!39.80!PAWR;;chr5:124084493..124084524,-!p2@ZNF608!0.87!14.92!ZNF608;;chr15:37390850..37390909,-!p3@MEIS2!0.87!12.97!MEIS2;;chr9:14314106..14314119,-!p5@NFIB!0.87!11.83!NFIB;;chr20:2673383..2673441,+!p1@EBF4!0.87!10.41!EBF4;;chr3:141106643..141106681,+!p16@ZBTB38!0.87!6.44!ZBTB38;;chr19:58400372..58400411,-!p1@ZNF814!0.86!34.68!ZNF814;;chr19:45261550..45261641,+!p6@BCL3!0.86!10.77!BCL3;;chr7:27196217..27196246,-!p2@HOXA7!0.86!6.27!HOXA7;;chr21:38071488..38071502,+!p4@SIM2!0.86!6.18!SIM2;;chr2:70142232..70142251,+!p1@MXD1!0.85!36.54!MXD1;;chr8:81398444..81398472,+!p1@ZBTB10!0.85!26.21!ZBTB10;;chr20:45142154..45142227,-!p1@ZNF334!0.85!12.62!ZNF334;;chr16:73092791..73092831,-!p4@ZFHX3!0.85!11.39!ZFHX3;;chr7:149470540..149470596,-!p2@ZNF467!0.85!8.21!ZNF467;;chr14:22005197..22005261,-!p3@SALL2!0.85!6.09!SALL2;;chr3:141106549..141106561,+!p47@ZBTB38!0.85!6.00!ZBTB38;;chr3:27763383..27763413,-!p3@EOMES!0.85!6.00!EOMES;;chr19:46271505..46271575,-!p2@SIX5!0.84!16.06!SIX5;;chr2:71127699..71127744,+!p1@VAX2!0.84!12.71!VAX2;;chr8:73921136..73921151,+!p2@TERF1!0.84!9.09!TERF1;;chr15:96869292..96869320,+!p15@NR2F2!0.84!8.83!NR2F2;;chr19:47523058..47523114,+!p1@NPAS1!0.83!5.82!NPAS1;;chr1:158985723..158985746,+!p20@IFI16!0.83!5.82!IFI16;;chr13:100634088..100634099,+!p5@ZIC2!0.83!5.82!ZIC2;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.74!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!0.82!25.59!ETV4;;chr12:66218420..66218439,+!p12@HMGA2!0.82!5.56!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.82!5.56!ZNF732;;chr6:32095504..32095516,-!p9@ATF6B!0.82!5.56!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0:44144292..44144338,-!p1@ZNF32!0.31!11.39!ZNF32;;chr2:178128149..178128198,-!p2@NFE2L2!0.31!9.18!NFE2L2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.31!8.12!GLIS2;;chr19:20959098..20959117,+!p1@ZNF66P!0.31!6.97!ZNF66P;;chr7:21467674..21467727,+!p1@SP4!0.31!6.71!SP4;;chr5:76383017..76383068,-!p1@ZBED3!0.31!6.00!ZBED3;;chr12:3069037..3069119,+!p2@TEAD4!0.31!5.74!TEAD4;;chr1:23694794..23694863,-!p1@ZNF436!0.31!5.65!ZNF436;;chr18:74534479..74534551,+!p1@ZNF236!0.31!4.94!ZNF236;;chr9:73029219..73029289,-!p2@KLF9!0.31!4.85!KLF9;;chr12:133656995..133657049,+!p2@ZNF140!0.31!3.80!ZNF140;;chr17:42298339..42298361,-!p5@UBTF!0.31!3.35!UBTF;;chr19:59084922..59084947,-!p3@MZF1!0.31!3.35!MZF1;;chr20:48807091..48807123,+!p7@CEBPB!0.31!3.35!CEBPB;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.31!3.09!ZNF322;;chr6:27356745..27356777,+!p1@ZNF391!0.31!2.21!ZNF391;;chr7:64023410..64023428,-!p2@ZNF680!0.31!2.12!ZNF680;;chr1:156470323..156470332,-!p4@MEF2D!0.31!2.03!MEF2D;;chr16:30569801..30569845,-!p4@ZNF764!0.31!1.68!ZNF764;;chr8:28243785..28243799,-!p6@ZNF395!0.31!1.41!ZNF395;;chr18:3447617..3447633,+!p20@TGIF1!0.31!1.24!TGIF1;;chr15:96869394..96869405,+!p25@NR2F2!0.31!1.06!NR2F2;;chr17:41623716..41623727,-!p12@ETV4!0.31!1.06!ETV4;;chr17:46806419..46806438,-!p4@HOXB13!0.31!1.06!HOXB13;;chr18:55102628..55102646,+!p2@ONECUT2!0.31!1.06!ONECUT2;;chr19:12595565..12595576,-!p3@ZNF709!0.31!1.06!ZNF709;;chr19:50434005..50434020,+!p10@ATF5!0.31!1.06!ATF5;;chr19:57791947..57791956,+!p7@ZNF460!0.31!1.06!ZNF460;;chr1:161736032..161736035,+!p6@ATF6!0.31!1.06!ATF6;;chr9:14083091..14083096,-!p12@NFIB!0.31!1.06!NFIB;;chrX:128657363..128657372,-!p3@SMARCA1!0.31!1.06!SMARCA1;;chr10:118897716..118897727,-!p7@VAX1!0.31!1.06!VAX1;;chr7:27170359..27170381,-!p1@HOXA4!0.31!1.06!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.31!1.06!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.31!1.06!SOX17;;chr9:115819058..115819082,-!p2@ZFP37!0.31!1.06!ZFP37;;chr3:147110055..147110129,-!p1@ZIC4!0.31!1.06!ZIC4;;chr12:53845879..53845894,+!p1@PCBP2!0.30!1287.39!PCBP2;;chr2:178129414..178129517,-!p1@NFE2L2!0.30!70.78!NFE2L2;;chr16:67596417..67596497,+!p1@CTCF!0.30!61.51!CTCF;;chr18:3450161..3450183,+!p1@TGIF1!0.30!61.07!TGIF1;;chr17:16118835..16118867,-!p1@NCOR1!0.30!60.46!NCOR1;;chr4:144434584..144434709,+!p2@SMARCA5!0.30!42.45!SMARCA5;;chr6:28109608..28109693,+!p1@ZNF192!0.30!29.74!ZNF192;;chr5:138629349..138629386,+!p3@MATR3!0.30!28.95!MATR3;;chr2:148778652..148778672,+!p1@MBD5!0.30!21.71!MBD5;;chr16:3333443..3333545,+!p1@ZNF263!0.30!21.00!ZNF263;;chr7:77428149..77428220,+!p1@PHTF2!0.30!17.65!PHTF2;;chr19:53400852..53400962,-!p1@ZNF320!0.30!17.39!ZNF320;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.30!13.41!ZNF564;;chr1:27022164..27022220,+!p2@ARID1A!0.30!12.89!ARID1A;;chr8:145980808..145980922,-!p1@ZNF251!0.30!12.62!ZNF251;;chr19:37825540..37825588,+!p2@HKR1!0.30!12.00!HKR1;;chr7:99070499..99070523,+!p1@ZNF789!0.30!8.83!ZNF789;;chr19:58459047..58459083,-!p1@ZNF256!0.30!8.21!ZNF256;;chr19:36706055..36706074,+!p3@ZNF146!0.30!7.77!ZNF146;;chr19:53073532..53073551,+!p1@ZNF701!0.30!7.41!ZNF701;;chr19:53360870..53360873,-!p1@ZNF468!0.30!5.91!ZNF468;;chrX:134478706..134478736,+!p1@ZNF449!0.30!5.21!ZNF449;;chr19:44645731..44645786,+!p2@ZNF226,p2@ZNF234!0.30!4.85!ZNF234;;chr12:122516626..122516645,+!p2@MLXIP!0.30!4.41!MLXIP;;chr18:3450293..3450304,+!p4@TGIF1!0.30!3.71!TGIF1;;chr15:66994561..66994597,+!p2@SMAD6!0.30!3.53!SMAD6;;chr19:56152332..56152347,+!p4@ZNF580!0.30!3.35!ZNF580;;chr20:48807171..48807234,+!p4@CEBPB!0.30!3.18!CEBPB;;chr20:48807456..48807475,+!p3@CEBPB!0.30!2.74!CEBPB;;chr1:151431811..151431832,-!p3@POGZ!0.30!2.21!POGZ;;chr12:51566592..51566617,-!p3@TFCP2!0.30!1.94!TFCP2;;chr1:158979680..158979683,+!p9@IFI16!0.30!1.68!IFI16;;chr1:244219775..244219893,+!p2@ZNF238!0.30!1.68!ZNF238;;chr19:18391615..18391637,-!p5@JUND!0.30!1.59!JUND;;chrX:152599653..152599662,+!p3@ZNF275!0.30!1.41!ZNF275;;chr8:28243649..28243660,-!p7@ZNF395!0.30!1.41!ZNF395;;chr20:46130846..46130869,+!p5@NCOA3!0.30!1.15!NCOA3;;
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=FF:0100385
 |fonse_cell_line_closure=FF:0100385

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FF:10410-106B5: Difference between revisions

From FANTOM5_SSTAR

Revision as of 18:52, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0