FFCP PHASE1:Hg19::chr10:52178196..52178245,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=259230|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29799|TSSclassifier=W|UniProt=E6ZCI7|association_with_transcript=-256bp_to_FN908146,FN985166_5end|description=CAGE_peak_3_at_SGMS1_5end|id=chr10:52178196..52178245,-|ontology_enrichment_celltype=CL:0000557!3.62e-24!71;CL:0000839!2.43e-23!70;CL:0002009!1.77e-22!65;CL:0000860!5.31e-22!45;CL:0002057!1.38e-21!42;CL:0002194!2.69e-21!63;CL:0000576!2.69e-21!63;CL:0000040!2.69e-21!63;CL:0000559!2.69e-21!63;CL:0000766!2.85e-21!76;CL:0000763!3.96e-20!112;CL:0000049!3.96e-20!112;CL:0002031!2.48e-13!124;CL:0002032!1.52e-12!165;CL:0000837!1.52e-12!165;CL:0000738!2.92e-12!140;CL:0000037!7.73e-12!172;CL:0000566!7.73e-12!172;CL:0000988!1.14e-11!182;CL:0002087!2.16e-11!119|ontology_enrichment_celltype_v019=CL:0000860;6.07e-21;33!CL:0002057;6.07e-21;33!CL:0000473;1.06e-20;39!CL:0000234;1.06e-20;39!CL:0000576;2.29e-14;48!CL:0000766;1.05e-11;69!CL:0000763;3.06e-07;100|ontology_enrichment_celltype_v019_2=CL:0000473,4.03e-26,48;CL:0000234,4.03e-26,48;CL:0000557,9.21e-25,67;CL:0000839,6.83e-24,66;CL:0002009,5.11e-23,61;CL:0000860,1.74e-22,42;CL:0002057,1.74e-22,42;CL:0000766,7.75e-22,72;CL:0002194,8.91e-22,59;CL:0000576,8.91e-22,59;CL:0000040,8.91e-22,59;CL:0000559,8.91e-22,59;CL:0000763,3.26e-21,108;CL:0000049,3.26e-21,108;CL:0002031,7.78e-14,120;CL:0002032,1.49e-13,161;CL:0000837,1.49e-13,161;CL:0000738,3.64e-13,136;CL:0000037,4.23e-13,168;CL:0000988,4.42e-13,177;CL:0002087,7.93e-12,115|ontology_enrichment_development_v019=CL:0002057;7.11e-17;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.99e-19!80;UBERON:0002193!9.29e-17!112;UBERON:0001474!1.33e-16!86;UBERON:0002390!1.55e-16!102;UBERON:0003061!1.55e-16!102;UBERON:0004765!2.09e-14!101;UBERON:0001434!2.09e-14!101;UBERON:0002405!7.26e-14!115;UBERON:0007023!5.33e-10!115;UBERON:0003081!3.09e-08!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.85e-19,76;UBERON:0002405,3.11e-18,93;UBERON:0002193,6.70e-17,108;UBERON:0002390,1.35e-16,98;UBERON:0003061,1.35e-16,98;UBERON:0001474,5.51e-16,82;UBERON:0004765,1.07e-12,90;UBERON:0001434,1.11e-12,100;UBERON:0007023,2.83e-10,114;UBERON:0003081,7.39e-08,203|phase1_expression=1.63510541343501,2.99740733447376,2.39622486963151,1.0007329835313,1.78784437770915,3.48935409640147,2.53299878168311,0,1.04474251279935,1.72013755551056,2.09340350391728,1.52908960491121,0.791300934685361,1.8564952944007,0.662794751455832,0.672325146451775,0,0.730310090387373,0.487932798790507,0.61560529038394,1.22400414746552,1.56727360739044,0.286235987131057,1.23186982565596,0.376627918784408,5.73100543109634,4.8439347775468,4.32909297225236,3.54027849164014,4.60595277716655,5.72819656269481,0,0.6024118375565,0.369754010166788,2.47895041856965,6.11327699695913,0.293600439334847,18.281848481552,20.0544447470142,18.0119022694157,39.4091234662267,23.6442376193855,30.1363414131998,12.7950450126017,10.2026504795979,12.1292030593908,35.3292136096641,26.7259127214187,35.6162326529369,50.3461686563763,32.2762490226667,29.3237965061846,73.7755756776364,43.8929584837002,51.4620649058499,25.6009581777942,11.7349644524874,11.9103446755895,50.5038422411989,29.8463995180767,47.310947309129,22.4298884126967,21.7415386807579,19.6063385245039,55.139755339431,32.9083430320861,39.8606239357168,48.7422410598082,27.6385946762707,27.8001721222549,55.0913547396366,27.9891003350549,35.4437873933791,2.11255286311942,2.12604299965044,1.88692780957538,6.40273197535022,7.0583139635508,6.91120022797445,2.28010194992999,1.79025009479181,1.27864907635244,1.75996244461323,0,0,0.853460445133014,0.400395987036012,1.14950487990897,0.661044872784862,0,0.569212969109448,1.17447437874188,1.14681968437569,2.64342657158052,1.12101712596307,0.790152254325231,8.26181034478099,9.03924754323079,16.6537214189602,2.67498392625085,0,2.36723902867367,1.94826728407911,4.12218690475142,42.4232506763766,48.2943890192294,26.8095825127365,9.73494029915131,8.32379824383221,1.47994114143309,0.276350017785848,0.579606171470105,0.14828656316206,0,0,2.49280553934646,0.383220493601921,3.4362744548263,0.253019692019503,0,0.651083453856419,1.90090408889675,0.451725357233318,0,1.24930726552346,0.947109008176067,0,1.20964045934839,2.13952156626806,2.02754165435919,0,2.01210257911091,1.02290049474824,0.361439152384566,0.50133791063589,2.60723734129483,1.5905718941022,0.973269740605272,1.03988298880475,0.443458794925128,0.790513071238134,3.73290365168481,0.728590576585084,1.11235332835329,1.62273696827342,2.08955684759121,2.12732736830184,0.953962497221368,0,0,1.78886166630035,0.860234595106124,2.77712401286075,2.82653970962005,2.51699661725944,3.57653454522088,3.9709043641994,3.6178346283706,3.20189636418039,2.67776490211736,3.22263453687318,7.60272105718513,4.63717909341522,2.20597848207521,3.24056779152704,2.41109266367015,2.91888184414021,4.61707069981621,1.53316637465883,3.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502,2.90060495881097,32.380934519677,1.96409332466223,0.705789743431384,1.44434460040503,2.92134555298607,1.37618785021362,13.4739208162364,5.67977623895465,3.05961705859116,0,3.1741610430924,2.23197010900051,3.23522940041993,0.432626562123789,1.38783067318587,0.764859003745869,0.380095503034311,1.52983244612973,0.26721740526556,0.275684698604535,0.250707539292375,2.34913964476542,0.803892390468535,2.48750831837634,10.3432995861895,2.98527574661373,4.52322419781107,1.0334225573761,1.05527014302958,1.23345048838675,1.14564884900697,1.61693751166575,1.95945073107265,1.36893320434112,2.55937801455433,3.22749924267044,2.32862249582209,1.46525883499754,1.06727345877715,0,0.0898252021065869,2.34640942403454,2.93379466038879,6.10344267473608,1.33151354837103,2.41528552309231,4.16739039994203|short_description=p3@SGMS1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=259230 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29799 | |||
|TSSclassifier=W | |||
|UniProt=E6ZCI7 | |||
|association_with_transcript=-256bp_to_FN908146,FN985166_5end | |||
|description=CAGE_peak_3_at_SGMS1_5end | |||
|id=chr10:52178196..52178245,- | |||
|ontology_enrichment_celltype=CL:0000557!3.62e-24!71;CL:0000839!2.43e-23!70;CL:0002009!1.77e-22!65;CL:0000860!5.31e-22!45;CL:0002057!1.38e-21!42;CL:0002194!2.69e-21!63;CL:0000576!2.69e-21!63;CL:0000040!2.69e-21!63;CL:0000559!2.69e-21!63;CL:0000766!2.85e-21!76;CL:0000763!3.96e-20!112;CL:0000049!3.96e-20!112;CL:0002031!2.48e-13!124;CL:0002032!1.52e-12!165;CL:0000837!1.52e-12!165;CL:0000738!2.92e-12!140;CL:0000037!7.73e-12!172;CL:0000566!7.73e-12!172;CL:0000988!1.14e-11!182;CL:0002087!2.16e-11!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.07e-21;33!CL:0002057;6.07e-21;33!CL:0000473;1.06e-20;39!CL:0000234;1.06e-20;39!CL:0000576;2.29e-14;48!CL:0000766;1.05e-11;69!CL:0000763;3.06e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.03e-26,48;CL:0000234,4.03e-26,48;CL:0000557,9.21e-25,67;CL:0000839,6.83e-24,66;CL:0002009,5.11e-23,61;CL:0000860,1.74e-22,42;CL:0002057,1.74e-22,42;CL:0000766,7.75e-22,72;CL:0002194,8.91e-22,59;CL:0000576,8.91e-22,59;CL:0000040,8.91e-22,59;CL:0000559,8.91e-22,59;CL:0000763,3.26e-21,108;CL:0000049,3.26e-21,108;CL:0002031,7.78e-14,120;CL:0002032,1.49e-13,161;CL:0000837,1.49e-13,161;CL:0000738,3.64e-13,136;CL:0000037,4.23e-13,168;CL:0000988,4.42e-13,177;CL:0002087,7.93e-12,115 | |||
|ontology_enrichment_development_v019=CL:0002057;7.11e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.99e-19!80;UBERON:0002193!9.29e-17!112;UBERON:0001474!1.33e-16!86;UBERON:0002390!1.55e-16!102;UBERON:0003061!1.55e-16!102;UBERON:0004765!2.09e-14!101;UBERON:0001434!2.09e-14!101;UBERON:0002405!7.26e-14!115;UBERON:0007023!5.33e-10!115;UBERON:0003081!3.09e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.85e-19,76;UBERON:0002405,3.11e-18,93;UBERON:0002193,6.70e-17,108;UBERON:0002390,1.35e-16,98;UBERON:0003061,1.35e-16,98;UBERON:0001474,5.51e-16,82;UBERON:0004765,1.07e-12,90;UBERON:0001434,1.11e-12,100;UBERON:0007023,2.83e-10,114;UBERON:0003081,7.39e-08,203 | |||
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| |||
|short_description=p3@SGMS1 | |||
}} |
Revision as of 13:37, 10 September 2013
Short description: | p3@SGMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SGMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | -256bp_to_FN908146, FN985166_5end |
EntrezGene: | SGMS1 |
HGNC: | 29799 |
UniProt: | E6ZCI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.03e-26 | 48 |
phagocyte | 4.03e-26 | 48 |
granulocyte monocyte progenitor cell | 9.21e-25 | 67 |
myeloid lineage restricted progenitor cell | 6.83e-24 | 66 |
macrophage dendritic cell progenitor | 5.11e-23 | 61 |
classical monocyte | 1.74e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.74e-22 | 42 |
myeloid leukocyte | 7.75e-22 | 72 |
monopoietic cell | 8.91e-22 | 59 |
monocyte | 8.91e-22 | 59 |
monoblast | 8.91e-22 | 59 |
promonocyte | 8.91e-22 | 59 |
myeloid cell | 3.26e-21 | 108 |
common myeloid progenitor | 3.26e-21 | 108 |
hematopoietic lineage restricted progenitor cell | 7.78e-14 | 120 |
hematopoietic oligopotent progenitor cell | 1.49e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.49e-13 | 161 |
leukocyte | 3.64e-13 | 136 |
hematopoietic stem cell | 4.23e-13 | 168 |
hematopoietic cell | 4.42e-13 | 177 |
nongranular leukocyte | 7.93e-12 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.85e-19 | 76 |
immune system | 3.11e-18 | 93 |
hemolymphoid system | 6.70e-17 | 108 |
hematopoietic system | 1.35e-16 | 98 |
blood island | 1.35e-16 | 98 |
bone element | 5.51e-16 | 82 |
skeletal element | 1.07e-12 | 90 |
skeletal system | 1.11e-12 | 100 |
adult organism | 2.83e-10 | 114 |
lateral plate mesoderm | 7.39e-08 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.