FFCP PHASE1:Hg19::chr12:53773944..53773993,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6667|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11205|TSSclassifier=S|UniProt=P08047,E4Z9M7|association_with_transcript=0bp_to_ENST00000327443,ENST00000551969,NM_001251825,NM_138473,uc001scw.2_5end|description=CAGE_peak_1_at_SP1_5end|id=chr12:53773944..53773993,+|ontology_enrichment_celltype=CL:0000037!4.10e-33!172;CL:0000566!4.10e-33!172;CL:0002032!1.15e-31!165;CL:0000837!1.15e-31!165;CL:0000738!1.36e-31!140;CL:0000988!1.64e-28!182;CL:0002031!1.02e-26!124;CL:0002087!9.91e-25!119;CL:0000763!6.78e-18!112;CL:0000049!6.78e-18!112;CL:0000766!3.76e-16!76;CL:0000839!2.19e-13!70;CL:0000557!3.29e-13!71;CL:0000542!4.00e-13!53;CL:0000051!4.00e-13!53;CL:0000838!4.57e-13!52;CL:0000860!5.36e-13!45;CL:0002057!1.54e-11!42;CL:0002009!4.99e-11!65;CL:0002194!1.17e-10!63;CL:0000576!1.17e-10!63;CL:0000040!1.17e-10!63;CL:0000559!1.17e-10!63;CL:0000945!4.11e-07!24;CL:0000826!4.11e-07!24;CL:0000236!5.03e-07!14|ontology_enrichment_celltype_v019=CL:0000860;3.91e-09;33!CL:0002057;3.91e-09;33!CL:0000542;3.40e-08;53!CL:0000576;3.44e-08;48!CL:0000738;8.31e-08;136!CL:0002087;8.56e-08;104!CL:0000236;1.83e-07;13!CL:0000766;3.02e-07;69!CL:0000945;4.30e-07;24|ontology_enrichment_celltype_v019_2=CL:0000037,1.15e-31,168;CL:0002032,3.07e-30,161;CL:0000837,3.07e-30,161;CL:0000738,3.64e-30,136;CL:0000988,9.82e-28,177;CL:0002031,2.36e-25,120;CL:0002087,2.16e-23,115;CL:0000763,1.12e-16,108;CL:0000049,1.12e-16,108;CL:0000766,6.51e-15,72;CL:0000542,4.00e-13,53;CL:0000051,4.00e-13,53;CL:0000838,4.57e-13,52;CL:0000839,3.39e-12,66;CL:0000557,5.01e-12,67;CL:0000860,1.54e-11,42;CL:0002057,1.54e-11,42;CL:0002009,6.83e-10,61;CL:0002194,1.57e-09,59;CL:0000576,1.57e-09,59;CL:0000040,1.57e-09,59;CL:0000559,1.57e-09,59;CL:0000473,1.65e-09,48;CL:0000234,1.65e-09,48;CL:0000945,4.11e-07,24;CL:0000826,4.11e-07,24;CL:0000236,5.03e-07,14|ontology_enrichment_development_v019=CL:0002057;1.05e-08;42!CL:0000051;3.40e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!8.46e-17!102;UBERON:0003061!8.46e-17!102;UBERON:0002193!7.10e-15!112;UBERON:0002371!1.07e-10!80;UBERON:0001474!5.74e-10!86;UBERON:0002405!3.58e-08!115;UBERON:0004765!7.25e-08!101;UBERON:0001434!7.25e-08!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-15,98;UBERON:0003061,1.37e-15,98;UBERON:0002193,1.01e-13,108;UBERON:0002405,3.33e-10,93;UBERON:0002371,1.28e-09,76;UBERON:0001474,6.20e-09,82;UBERON:0004765,2.25e-07,90;UBERON:0001434,5.13e-07,100|phase1_expression=4.72363786103447,5.35251309727458,4.79244973926302,2.00146596706261,5.36353313312745,2.61701557230111,0,3.15859936713415,9.40268261519419,4.91467873003018,2.09340350391728,6.77168253603534,6.85794143393979,5.07442047136191,5.96515276310248,6.05092631806598,5.42425075221579,3.65155045193687,3.90346239032406,4.80172126499473,7.54802557603736,5.64218498660558,6.5834277040143,9.17058647988324,7.78364365487777,13.3723460058915,11.4940825229924,10.9407986026014,10.6208354749204,10.3633937486247,14.3978994683951,2.75826367343678,6.024118375565,2.9580320813343,10.2256704765998,7.81930778680818,8.51441274071057,7.20194031091441,11.4310335057981,11.0675544065084,6.94137970143765,4.21061765824673,9.01514486719653,20.6465499066982,13.6035339727971,16.2531320995837,9.29716147622739,13.1573724166984,10.8397229813286,9.20615655430881,9.73410684810582,8.0403958162119,8.96338769915208,8.39130088658974,5.41705946377367,18.4477492751753,11.7349644524874,10.1125568000288,11.6311879100943,8.34415470397843,5.75403413219137,10.5552416059749,17.353338213082,9.37694451171927,13.6398342155434,10.2129340444405,13.0792672289071,17.0849092374585,15.644487552606,10.2078757011405,13.3187890579341,13.9945501675275,5.06339819905415,9.92899845666126,14.669696697588,6.49941801075965,17.9725809834392,15.0176892841506,14.7867539761314,10.8304842621674,17.1068342391217,10.0465284570549,14.0796995569058,12.561188059029,19.5692035849982,13.6553671221282,22.4221752740167,17.817325638589,11.2377628373427,16.2189138271012,19.9224539188307,15.2681669236444,19.1136614062614,11.8954195721123,4.48406850385229,7.90152254325231,11.2124568964885,12.1833336452241,10.896879446974,8.3593247695339,11.7332015988093,11.8361951433683,1.94826728407911,7.35309015442146,8.24896540929544,11.5197625183483,6.77009659412539,7.94166182299186,6.63302672555379,7.23526780256175,6.63240042686036,7.24507714337631,10.5283459845063,12.0393372640371,6.27213142829861,11.6708622978493,11.1133943144557,13.0578429283399,11.3858861408776,13.6983128159362,7.81300144627702,4.75226022224187,11.895434407144,9.98295567004463,7.49584359314075,15.8640758869491,12.3169199538157,9.27391018833769,9.09296665663925,12.1652499261551,4.87613732627923,3.35350429851818,6.39312809217652,3.61439152384566,2.00535164254356,6.22840031531542,6.36228757640879,8.27279279514481,7.46825055596136,4.21285855178871,6.32410456990508,11.002242341807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8.46887371158467,7.55349341685,20.5285495810881,9.20839473386292,7.87121123195777,7.70603115093892,12.0130602011215,4.58277830875868,11.4790456854909,12.8893194829362,7.26238393365217,7.31410006502863,16.6398281952645,5.60399523799829,3.52675943690684,4.2874366829448,6.29446405945303,7.08482881627925,9.09912996625762,3.07674546361133,2.01657356977374,5.18679393481634,5.49017195148294,2.85538840518309,6.87034029507179,6.25239533743024,9.35485852460563,11.0904639504325,6.48349562294184,8.28431911272121,6.16640288560452,13.6130694312156,6.45456219851264,10.1596821460302,6.28576066755414,6.22333286538368,8.27994082815454,4.18733024634047,3.90539049306924,6.40729069153671,4.6293541441552,1.09394961803644,24.123341741716,16.3749688868467,10.3764034172176,6.51588380961936,3.21421101526972,4.03540466662589,4.85572483389305,8.87882546270061,10.0233678283782,7.02927324090253,10.1177925568077,4.62194184242456,4.73563969652513,6.26427356685031,6.00649570217173,8.9482125849586,4.87058328739606,11.4911586958653,10.9579046461139,3.45484145949794,8.5995303819669,10.2926223614385,9.32280309223087,7.32320979819189,11.4746459719702,6.41369091784202,5.80205259656503,9.04807928597935,10.3688949272114,6.45341038230416,7.21825204456449,7.49877961880588,12.2782244555369,5.26945797651315,8.06536602727232,8.5998504507969,11.1855431797792,15.2132862103627,6.70548587402482,3.88457302312737,11.6008971747559,6.95888658802919,16.0284627709516,5.38060765962843,4.3769170535501,7.72980590054196,11.407554285935,20.5588766313952,4.83081099413355,10.6500338188964,11.1465375857018,0.940634592723046,10.7865261571718,4.47785439493089,4.71140321075869,6.83206720752298,8.8757702792514,5.77752189938577,10.8081505676832,12.2469987149797,10.9935271517422,11.4274520707621,5.29342307573538,13.2398255037128,5.84269110597214,8.71585638468627,12.0405249847219,11.990638726682,3.53555748992756,4.36350690340377,14.2837246939158,4.46394021800102,5.0839319149456,4.32626562123789,5.80365554241363,5.79107531407586,5.95482954753754,11.422748931102,18.7052183685892,21.4115115916189,18.8030654469281,9.01766508797049,13.9341347681213,1.65833887891756,10.9638975613609,15.3528466968706,9.04644839562213,14.5325047131014,16.3877245741065,5.60659312903067,7.63765899337979,7.07410161353767,11.321270890642,9.24029912930259,12.8642421257862,7.60255377162369,9.64715033983439,7.9775203238755,10.3525525501384,0,5.4793373285018,7.03922827210363,9.29034975789785,8.95171592294625,16.6439193546378,14.0891655513718,6.73193833836789|short_description=p1@SP1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6667 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11205 | |||
|TSSclassifier=S | |||
|UniProt=P08047,E4Z9M7 | |||
|association_with_transcript=0bp_to_ENST00000327443,ENST00000551969,NM_001251825,NM_138473,uc001scw.2_5end | |||
|description=CAGE_peak_1_at_SP1_5end | |||
|id=chr12:53773944..53773993,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.10e-33!172;CL:0000566!4.10e-33!172;CL:0002032!1.15e-31!165;CL:0000837!1.15e-31!165;CL:0000738!1.36e-31!140;CL:0000988!1.64e-28!182;CL:0002031!1.02e-26!124;CL:0002087!9.91e-25!119;CL:0000763!6.78e-18!112;CL:0000049!6.78e-18!112;CL:0000766!3.76e-16!76;CL:0000839!2.19e-13!70;CL:0000557!3.29e-13!71;CL:0000542!4.00e-13!53;CL:0000051!4.00e-13!53;CL:0000838!4.57e-13!52;CL:0000860!5.36e-13!45;CL:0002057!1.54e-11!42;CL:0002009!4.99e-11!65;CL:0002194!1.17e-10!63;CL:0000576!1.17e-10!63;CL:0000040!1.17e-10!63;CL:0000559!1.17e-10!63;CL:0000945!4.11e-07!24;CL:0000826!4.11e-07!24;CL:0000236!5.03e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.91e-09;33!CL:0002057;3.91e-09;33!CL:0000542;3.40e-08;53!CL:0000576;3.44e-08;48!CL:0000738;8.31e-08;136!CL:0002087;8.56e-08;104!CL:0000236;1.83e-07;13!CL:0000766;3.02e-07;69!CL:0000945;4.30e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.15e-31,168;CL:0002032,3.07e-30,161;CL:0000837,3.07e-30,161;CL:0000738,3.64e-30,136;CL:0000988,9.82e-28,177;CL:0002031,2.36e-25,120;CL:0002087,2.16e-23,115;CL:0000763,1.12e-16,108;CL:0000049,1.12e-16,108;CL:0000766,6.51e-15,72;CL:0000542,4.00e-13,53;CL:0000051,4.00e-13,53;CL:0000838,4.57e-13,52;CL:0000839,3.39e-12,66;CL:0000557,5.01e-12,67;CL:0000860,1.54e-11,42;CL:0002057,1.54e-11,42;CL:0002009,6.83e-10,61;CL:0002194,1.57e-09,59;CL:0000576,1.57e-09,59;CL:0000040,1.57e-09,59;CL:0000559,1.57e-09,59;CL:0000473,1.65e-09,48;CL:0000234,1.65e-09,48;CL:0000945,4.11e-07,24;CL:0000826,4.11e-07,24;CL:0000236,5.03e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;1.05e-08;42!CL:0000051;3.40e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.46e-17!102;UBERON:0003061!8.46e-17!102;UBERON:0002193!7.10e-15!112;UBERON:0002371!1.07e-10!80;UBERON:0001474!5.74e-10!86;UBERON:0002405!3.58e-08!115;UBERON:0004765!7.25e-08!101;UBERON:0001434!7.25e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.37e-15,98;UBERON:0003061,1.37e-15,98;UBERON:0002193,1.01e-13,108;UBERON:0002405,3.33e-10,93;UBERON:0002371,1.28e-09,76;UBERON:0001474,6.20e-09,82;UBERON:0004765,2.25e-07,90;UBERON:0001434,5.13e-07,100 | |||
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| |||
|short_description=p1@SP1 | |||
}} |
Revision as of 23:17, 10 September 2013
Short description: | p1@SP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327443, ENST00000551969, NM_001251825, NM_138473, uc001scw.2_5end |
EntrezGene: | SP1 |
HGNC: | 11205 |
UniProt: | P08047E4Z9M7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.15e-31 | 168 |
hematopoietic oligopotent progenitor cell | 3.07e-30 | 161 |
hematopoietic multipotent progenitor cell | 3.07e-30 | 161 |
leukocyte | 3.64e-30 | 136 |
hematopoietic cell | 9.82e-28 | 177 |
hematopoietic lineage restricted progenitor cell | 2.36e-25 | 120 |
nongranular leukocyte | 2.16e-23 | 115 |
myeloid cell | 1.12e-16 | 108 |
common myeloid progenitor | 1.12e-16 | 108 |
myeloid leukocyte | 6.51e-15 | 72 |
lymphocyte | 4.00e-13 | 53 |
common lymphoid progenitor | 4.00e-13 | 53 |
lymphoid lineage restricted progenitor cell | 4.57e-13 | 52 |
myeloid lineage restricted progenitor cell | 3.39e-12 | 66 |
granulocyte monocyte progenitor cell | 5.01e-12 | 67 |
classical monocyte | 1.54e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.54e-11 | 42 |
macrophage dendritic cell progenitor | 6.83e-10 | 61 |
monopoietic cell | 1.57e-09 | 59 |
monocyte | 1.57e-09 | 59 |
monoblast | 1.57e-09 | 59 |
promonocyte | 1.57e-09 | 59 |
defensive cell | 1.65e-09 | 48 |
phagocyte | 1.65e-09 | 48 |
lymphocyte of B lineage | 4.11e-07 | 24 |
pro-B cell | 4.11e-07 | 24 |
B cell | 5.03e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.37e-15 | 98 |
blood island | 1.37e-15 | 98 |
hemolymphoid system | 1.01e-13 | 108 |
immune system | 3.33e-10 | 93 |
bone marrow | 1.28e-09 | 76 |
bone element | 6.20e-09 | 82 |
skeletal element | 2.25e-07 | 90 |
skeletal system | 5.13e-07 | 100 |
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