FFCP PHASE1:Hg19::chr18:47721508..47721549,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4645|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7603|TSSclassifier=S|UniProt=Q9ULV0,Q7Z7A5,Q9H6Y6|association_with_transcript=-57bp_to_ENST00000285039,NM_001080467,uc002leb.2_5end|description=CAGE_peak_3_at_MYO5B_5end|id=chr18:47721508..47721549,-|ontology_enrichment_celltype=CL:0000066!1.41e-15!254;CL:0002076!9.46e-09!43;CL:0000223!1.93e-08!59|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,9.84e-12,253;CL:0002076,5.39e-07,42;CL:0000223,8.88e-07,58|ontology_enrichment_development_v019=UBERON:0001041;1.37e-10;30!UBERON:0008947;1.21e-07;29|ontology_enrichment_disease=DOID:305!3.97e-20!106;DOID:0050687!8.44e-14!143;DOID:299!2.28e-07!25|ontology_enrichment_disease_v019=DOID:299;3.44e-07;25|ontology_enrichment_disease_v019_2=DOID:305,3.38e-14,106;DOID:0050687,1.00e-09,143;DOID:299,4.19e-07,25|ontology_enrichment_uberon=UBERON:0000064!8.82e-15!219;UBERON:0007023!8.40e-14!115;UBERON:0004119!2.57e-13!169;UBERON:0000925!2.57e-13!169;UBERON:0006595!2.57e-13!169;UBERON:0004921!3.20e-12!129;UBERON:0004185!3.20e-12!129;UBERON:0001007!3.64e-12!155;UBERON:0001555!3.64e-12!155;UBERON:0007026!3.64e-12!155;UBERON:0000062!1.22e-11!511;UBERON:0000077!2.54e-11!130;UBERON:0001004!5.81e-11!72;UBERON:0000481!1.43e-09!347;UBERON:0004121!1.69e-09!169;UBERON:0000466!2.81e-09!126;UBERON:0000065!2.81e-09!53;UBERON:0000464!3.86e-09!104;UBERON:0005743!6.81e-09!86;UBERON:0003056!1.00e-08!61;UBERON:0000924!1.14e-08!173;UBERON:0006601!1.14e-08!173;UBERON:0008947!1.26e-08!38;UBERON:0003258!1.26e-08!38;UBERON:0002780!1.40e-08!41;UBERON:0001890!1.40e-08!41;UBERON:0006240!1.40e-08!41;UBERON:0000153!3.07e-08!129;UBERON:0007811!3.07e-08!129;UBERON:0005911!3.18e-08!82;UBERON:0001041!3.25e-08!98;UBERON:0001017!3.35e-08!82;UBERON:0003080!4.02e-08!42;UBERON:0005153!5.70e-08!37;UBERON:0003075!8.34e-08!86;UBERON:0007284!8.34e-08!86;UBERON:0000033!1.06e-07!123;UBERON:0005157!1.25e-07!51;UBERON:0000922!1.69e-07!612;UBERON:0000956!2.04e-07!25;UBERON:0000203!2.04e-07!25;UBERON:0002619!2.09e-07!22;UBERON:0005177!3.38e-07!107;UBERON:0001869!4.54e-07!32;UBERON:0000072!6.60e-07!46;UBERON:0000073!7.74e-07!94;UBERON:0001016!7.74e-07!94;UBERON:0001049!8.42e-07!57;UBERON:0005068!8.42e-07!57;UBERON:0006241!8.42e-07!57;UBERON:0007135!8.42e-07!57;UBERON:0002346!9.04e-07!90;UBERON:0001950!9.77e-07!20|ontology_enrichment_uberon_v019=UBERON:0000922;7.08e-08;49!UBERON:0000058;2.81e-07;10!UBERON:0002048;2.82e-07;22!UBERON:0000117;2.82e-07;22!UBERON:0000171;2.82e-07;22!UBERON:0000170;2.82e-07;22!UBERON:0002619;7.46e-07;22!UBERON:0001950;9.08e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.61e-10,160;UBERON:0000925,1.61e-10,160;UBERON:0006595,1.61e-10,160;UBERON:0011216,3.31e-10,223;UBERON:0004921,4.02e-10,118;UBERON:0001007,3.65e-09,145;UBERON:0001555,3.65e-09,145;UBERON:0007026,3.65e-09,145;UBERON:0005911,6.00e-09,82;UBERON:0005177,1.68e-08,101;UBERON:0005153,4.72e-08,37;UBERON:0001004,4.75e-08,74;UBERON:0009569,1.31e-07,112;UBERON:0001041,1.53e-07,87;UBERON:0000065,2.24e-07,54;UBERON:0006554,3.13e-07,47;UBERON:0002048,3.79e-07,22;UBERON:0000117,3.79e-07,22;UBERON:0000171,3.79e-07,22;UBERON:0000170,3.79e-07,22;UBERON:0005597,3.79e-07,22;UBERON:0000118,3.79e-07,22;UBERON:0001008,6.16e-07,48;UBERON:0002619,6.52e-07,22;UBERON:0001950,7.89e-07,20;UBERON:0007023,8.42e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,1.39560233594486,1.74753097704138,1.05506791291381,0,0,0,0,0,0,0.492484232307152,0,0,0.572471974262113,0.136874425072884,0.125542639594803,2.13957536094264,1.88831355734875,2.04648031415566,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.853460445133014,0.400395987036012,0,0,0,0.569212969109448,0,0,0,0,0,0,1.17903228824749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0.50133791063589,0.144846518960824,1.5905718941022,1.45990461090791,0.756278537312543,0.221729397462564,0.175669571386252,2.29213382120997,0.364295288292542,1.11235332835329,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0.468642863667593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.70565194428616,2.18196896472668,0.573609190778008,3.29329006549908,2.78312513475119,3.02104251460748,2.90250954043037,3.28017106138317,2.91981887260664,0,0,0,0,0,1.53798840051797,1.18009283054671,0.964044119533928,0.992645754591546,1.30727666455444,1.42362371466658,0.674156540800822,0.784885860501384,0.769494313892781,0,0,0,0,0,0,0.590789906681404,0,2.09080345523293,0.343135620597051,0.98775256867763,0,0,0.462942225792648,0.325808305310325,0,0,4.75314660397815,0.469634776943287,0,0,0,3.95102198979638,2.57545848628462,0,0,0,0.93733833986777,0.839910640994298,0.283550194484773,1.34337784054272,1.16253575405585,0.3833826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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4645 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7603 | |||
|TSSclassifier=S | |||
|UniProt=Q9ULV0,Q7Z7A5,Q9H6Y6 | |||
|association_with_transcript=-57bp_to_ENST00000285039,NM_001080467,uc002leb.2_5end | |||
|description=CAGE_peak_3_at_MYO5B_5end | |||
|id=chr18:47721508..47721549,- | |||
|ontology_enrichment_celltype=CL:0000066!1.41e-15!254;CL:0002076!9.46e-09!43;CL:0000223!1.93e-08!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.84e-12,253;CL:0002076,5.39e-07,42;CL:0000223,8.88e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.37e-10;30!UBERON:0008947;1.21e-07;29 | |||
|ontology_enrichment_disease=DOID:305!3.97e-20!106;DOID:0050687!8.44e-14!143;DOID:299!2.28e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;3.44e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.38e-14,106;DOID:0050687,1.00e-09,143;DOID:299,4.19e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000064!8.82e-15!219;UBERON:0007023!8.40e-14!115;UBERON:0004119!2.57e-13!169;UBERON:0000925!2.57e-13!169;UBERON:0006595!2.57e-13!169;UBERON:0004921!3.20e-12!129;UBERON:0004185!3.20e-12!129;UBERON:0001007!3.64e-12!155;UBERON:0001555!3.64e-12!155;UBERON:0007026!3.64e-12!155;UBERON:0000062!1.22e-11!511;UBERON:0000077!2.54e-11!130;UBERON:0001004!5.81e-11!72;UBERON:0000481!1.43e-09!347;UBERON:0004121!1.69e-09!169;UBERON:0000466!2.81e-09!126;UBERON:0000065!2.81e-09!53;UBERON:0000464!3.86e-09!104;UBERON:0005743!6.81e-09!86;UBERON:0003056!1.00e-08!61;UBERON:0000924!1.14e-08!173;UBERON:0006601!1.14e-08!173;UBERON:0008947!1.26e-08!38;UBERON:0003258!1.26e-08!38;UBERON:0002780!1.40e-08!41;UBERON:0001890!1.40e-08!41;UBERON:0006240!1.40e-08!41;UBERON:0000153!3.07e-08!129;UBERON:0007811!3.07e-08!129;UBERON:0005911!3.18e-08!82;UBERON:0001041!3.25e-08!98;UBERON:0001017!3.35e-08!82;UBERON:0003080!4.02e-08!42;UBERON:0005153!5.70e-08!37;UBERON:0003075!8.34e-08!86;UBERON:0007284!8.34e-08!86;UBERON:0000033!1.06e-07!123;UBERON:0005157!1.25e-07!51;UBERON:0000922!1.69e-07!612;UBERON:0000956!2.04e-07!25;UBERON:0000203!2.04e-07!25;UBERON:0002619!2.09e-07!22;UBERON:0005177!3.38e-07!107;UBERON:0001869!4.54e-07!32;UBERON:0000072!6.60e-07!46;UBERON:0000073!7.74e-07!94;UBERON:0001016!7.74e-07!94;UBERON:0001049!8.42e-07!57;UBERON:0005068!8.42e-07!57;UBERON:0006241!8.42e-07!57;UBERON:0007135!8.42e-07!57;UBERON:0002346!9.04e-07!90;UBERON:0001950!9.77e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;7.08e-08;49!UBERON:0000058;2.81e-07;10!UBERON:0002048;2.82e-07;22!UBERON:0000117;2.82e-07;22!UBERON:0000171;2.82e-07;22!UBERON:0000170;2.82e-07;22!UBERON:0002619;7.46e-07;22!UBERON:0001950;9.08e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.61e-10,160;UBERON:0000925,1.61e-10,160;UBERON:0006595,1.61e-10,160;UBERON:0011216,3.31e-10,223;UBERON:0004921,4.02e-10,118;UBERON:0001007,3.65e-09,145;UBERON:0001555,3.65e-09,145;UBERON:0007026,3.65e-09,145;UBERON:0005911,6.00e-09,82;UBERON:0005177,1.68e-08,101;UBERON:0005153,4.72e-08,37;UBERON:0001004,4.75e-08,74;UBERON:0009569,1.31e-07,112;UBERON:0001041,1.53e-07,87;UBERON:0000065,2.24e-07,54;UBERON:0006554,3.13e-07,47;UBERON:0002048,3.79e-07,22;UBERON:0000117,3.79e-07,22;UBERON:0000171,3.79e-07,22;UBERON:0000170,3.79e-07,22;UBERON:0005597,3.79e-07,22;UBERON:0000118,3.79e-07,22;UBERON:0001008,6.16e-07,48;UBERON:0002619,6.52e-07,22;UBERON:0001950,7.89e-07,20;UBERON:0007023,8.42e-07,114 | |||
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| |||
|short_description=p3@MYO5B | |||
}} |
Revision as of 17:40, 11 September 2013
Short description: | p3@MYO5B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_MYO5B_5end |
Coexpression cluster: | NA |
Association with transcript: | -57bp_to_ENST00000285039, NM_001080467, uc002leb.2_5end |
EntrezGene: | MYO5B |
HGNC: | 7603 |
UniProt: | Q9ULV0Q7Z7A5Q9H6Y6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.84e-12 | 253 |
endo-epithelial cell | 5.39e-07 | 42 |
endodermal cell | 8.88e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.61e-10 | 160 |
endoderm | 1.61e-10 | 160 |
presumptive endoderm | 1.61e-10 | 160 |
organ system subdivision | 3.31e-10 | 223 |
subdivision of digestive tract | 4.02e-10 | 118 |
digestive system | 3.65e-09 | 145 |
digestive tract | 3.65e-09 | 145 |
primitive gut | 3.65e-09 | 145 |
endo-epithelium | 6.00e-09 | 82 |
trunk region element | 1.68e-08 | 101 |
epithelial bud | 4.72e-08 | 37 |
respiratory system | 4.75e-08 | 74 |
subdivision of trunk | 1.31e-07 | 112 |
foregut | 1.53e-07 | 87 |
respiratory tract | 2.24e-07 | 54 |
urinary system structure | 3.13e-07 | 47 |
lung | 3.79e-07 | 22 |
respiratory tube | 3.79e-07 | 22 |
respiration organ | 3.79e-07 | 22 |
pair of lungs | 3.79e-07 | 22 |
lung primordium | 3.79e-07 | 22 |
lung bud | 3.79e-07 | 22 |
renal system | 6.16e-07 | 48 |
regional part of cerebral cortex | 6.52e-07 | 22 |
neocortex | 7.89e-07 | 20 |
adult organism | 8.42e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.38e-14 | 106 |
cell type cancer | 1.00e-09 | 143 |
adenocarcinoma | 4.19e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.