FFCP PHASE1:Hg19::chr9:123165778..123165799,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55755|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18672|TSSclassifier=S|UniProt=|association_with_transcript=-5bp_to_ENST00000480467_5end|coexpression_cluster_id=C125|description=CAGE_peak_8_at_CDK5RAP2_5end|id=chr9:123165778..123165799,-|ontology_enrichment_celltype=CL:0002194!1.86e-21!63;CL:0000576!1.86e-21!63;CL:0000040!1.86e-21!63;CL:0000559!1.86e-21!63;CL:0002009!2.36e-20!65;CL:0000766!8.11e-20!76;CL:0000839!6.05e-19!70;CL:0000860!1.49e-17!45;CL:0000557!1.94e-17!71;CL:0002057!3.63e-16!42;CL:0000763!4.68e-14!112;CL:0000049!4.68e-14!112;CL:0002087!2.88e-08!119;CL:0002031!2.28e-07!124;CL:0000738!3.53e-07!140;CL:0002032!8.66e-07!165;CL:0000837!8.66e-07!165|ontology_enrichment_celltype_v019=CL:0000860;1.28e-54;33!CL:0002057;1.28e-54;33!CL:0000473;1.76e-42;39!CL:0000234;1.76e-42;39!CL:0000576;8.84e-31;48!CL:0000766;1.30e-18;69!CL:0000763;8.71e-09;100!CL:0002087;3.00e-08;104|ontology_enrichment_celltype_v019_2=CL:0000473,6.09e-47,48;CL:0000234,6.09e-47,48;CL:0000860,4.60e-46,42;CL:0002057,4.60e-46,42;CL:0002194,1.30e-45,59;CL:0000576,1.30e-45,59;CL:0000040,1.30e-45,59;CL:0000559,1.30e-45,59;CL:0002009,6.66e-44,61;CL:0000839,4.44e-40,66;CL:0000557,2.21e-39,67;CL:0000766,5.30e-39,72;CL:0000763,1.19e-23,108;CL:0000049,1.19e-23,108;CL:0002087,1.60e-23,115;CL:0002031,3.09e-22,120;CL:0000738,2.85e-20,136;CL:0002032,5.93e-16,161;CL:0000837,5.93e-16,161;CL:0000037,5.62e-15,168;CL:0000988,7.76e-14,177|ontology_enrichment_development_v019=CL:0002057;3.22e-34;42!CL:0000049;2.51e-08;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.44e-23!102;UBERON:0003061!2.44e-23!102;UBERON:0002193!1.73e-20!112;UBERON:0002371!9.88e-17!80;UBERON:0001474!2.78e-15!86;UBERON:0002405!1.21e-12!115;UBERON:0004765!1.26e-11!101;UBERON:0001434!1.26e-11!101;UBERON:0000178!2.80e-07!15;UBERON:0000179!2.80e-07!15;UBERON:0000463!2.80e-07!15|ontology_enrichment_uberon_v019=UBERON:0000178;2.62e-15;15!UBERON:0000179;2.62e-15;15!UBERON:0000463;2.62e-15;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.76e-44,98;UBERON:0003061,9.76e-44,98;UBERON:0002193,6.57e-39,108;UBERON:0002371,6.34e-34,76;UBERON:0001474,6.04e-31,82;UBERON:0004765,1.38e-27,90;UBERON:0002405,1.78e-26,93;UBERON:0001434,3.86e-24,100;UBERON:0003081,1.09e-16,203;UBERON:0000178,2.58e-15,15;UBERON:0000179,2.58e-15,15;UBERON:0000463,2.58e-15,15;UBERON:0002204,1.03e-11,167;UBERON:0000926,8.94e-08,315;UBERON:0004120,8.94e-08,315;UBERON:0006603,8.94e-08,315|phase1_expression=0,0.428201047781966,0,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0.263766978228454,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0.447830948479849,1.29557466407592,1.54545340580512,1.59938062657521,1.51150377475524,0.485168122375632,1.85943229524548,2.46700732813095,2.16794459626573,5.75384784644301,4.35473201099471,1.89185783910868,2.75796544589295,0,0,0.564727018627814,1.09162460023138,1.57306439111559,1.22433556948361,0.641858054152187,0,1.9791078011203,5.18605509816243,2.55734850319616,7.83564944297177,6.24123747160254,4.9825779919646,5.52747063564835,1.5644487552606,1.08594422352558,6.05399502633369,1.10483290796269,4.74693581161327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14950487990897,0,0,0,0,0.382273228125229,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0.97364218096405,1.21890816109487,0.398873881556595,0,0,0,0.596287222100115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0.151357427644931,1.15235184896,0,0,0.570471821544449,0.149448680551801,0,0,0,0.408308342509787,0,0.206651562351531,1.18800285728205,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0.368199594569197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330881918197182,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0.246217006087397,1.40402559083543,0.891786973732369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0,0,0,0,0.710783897485092,0,0,0,0,0,0,4.21667878966063,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0.749007023947182,0,2.07207756718018,0.24538298343828,0.500170521059677,0,0,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0,0,0,0.783204629850962,0,0,0.862856803274467,0,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0.177561725313127,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0,0.229628896329213,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0,0.082509499920588,0,0,0,0,0.154048617114644,0.307007349452259,0,0.107420244868274,0.145016693914229,0.170453254832202,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0.17987245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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENST00000480467_5end | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_8_at_CDK5RAP2_5end | |||
|id=chr9:123165778..123165799,- | |||
|ontology_enrichment_celltype=CL:0002194!1.86e-21!63;CL:0000576!1.86e-21!63;CL:0000040!1.86e-21!63;CL:0000559!1.86e-21!63;CL:0002009!2.36e-20!65;CL:0000766!8.11e-20!76;CL:0000839!6.05e-19!70;CL:0000860!1.49e-17!45;CL:0000557!1.94e-17!71;CL:0002057!3.63e-16!42;CL:0000763!4.68e-14!112;CL:0000049!4.68e-14!112;CL:0002087!2.88e-08!119;CL:0002031!2.28e-07!124;CL:0000738!3.53e-07!140;CL:0002032!8.66e-07!165;CL:0000837!8.66e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.28e-54;33!CL:0002057;1.28e-54;33!CL:0000473;1.76e-42;39!CL:0000234;1.76e-42;39!CL:0000576;8.84e-31;48!CL:0000766;1.30e-18;69!CL:0000763;8.71e-09;100!CL:0002087;3.00e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,6.09e-47,48;CL:0000234,6.09e-47,48;CL:0000860,4.60e-46,42;CL:0002057,4.60e-46,42;CL:0002194,1.30e-45,59;CL:0000576,1.30e-45,59;CL:0000040,1.30e-45,59;CL:0000559,1.30e-45,59;CL:0002009,6.66e-44,61;CL:0000839,4.44e-40,66;CL:0000557,2.21e-39,67;CL:0000766,5.30e-39,72;CL:0000763,1.19e-23,108;CL:0000049,1.19e-23,108;CL:0002087,1.60e-23,115;CL:0002031,3.09e-22,120;CL:0000738,2.85e-20,136;CL:0002032,5.93e-16,161;CL:0000837,5.93e-16,161;CL:0000037,5.62e-15,168;CL:0000988,7.76e-14,177 | |||
|ontology_enrichment_development_v019=CL:0002057;3.22e-34;42!CL:0000049;2.51e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.44e-23!102;UBERON:0003061!2.44e-23!102;UBERON:0002193!1.73e-20!112;UBERON:0002371!9.88e-17!80;UBERON:0001474!2.78e-15!86;UBERON:0002405!1.21e-12!115;UBERON:0004765!1.26e-11!101;UBERON:0001434!1.26e-11!101;UBERON:0000178!2.80e-07!15;UBERON:0000179!2.80e-07!15;UBERON:0000463!2.80e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.62e-15;15!UBERON:0000179;2.62e-15;15!UBERON:0000463;2.62e-15;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.76e-44,98;UBERON:0003061,9.76e-44,98;UBERON:0002193,6.57e-39,108;UBERON:0002371,6.34e-34,76;UBERON:0001474,6.04e-31,82;UBERON:0004765,1.38e-27,90;UBERON:0002405,1.78e-26,93;UBERON:0001434,3.86e-24,100;UBERON:0003081,1.09e-16,203;UBERON:0000178,2.58e-15,15;UBERON:0000179,2.58e-15,15;UBERON:0000463,2.58e-15,15;UBERON:0002204,1.03e-11,167;UBERON:0000926,8.94e-08,315;UBERON:0004120,8.94e-08,315;UBERON:0006603,8.94e-08,315 | |||
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|short_description=p8@CDK5RAP2 | |||
}} |
Revision as of 07:14, 14 September 2013
Short description: | p8@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_CDK5RAP2_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | -5bp_to_ENST00000480467_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 6.09e-47 | 48 |
phagocyte | 6.09e-47 | 48 |
classical monocyte | 4.60e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.60e-46 | 42 |
monopoietic cell | 1.30e-45 | 59 |
monocyte | 1.30e-45 | 59 |
monoblast | 1.30e-45 | 59 |
promonocyte | 1.30e-45 | 59 |
macrophage dendritic cell progenitor | 6.66e-44 | 61 |
myeloid lineage restricted progenitor cell | 4.44e-40 | 66 |
granulocyte monocyte progenitor cell | 2.21e-39 | 67 |
myeloid leukocyte | 5.30e-39 | 72 |
myeloid cell | 1.19e-23 | 108 |
common myeloid progenitor | 1.19e-23 | 108 |
nongranular leukocyte | 1.60e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 3.09e-22 | 120 |
leukocyte | 2.85e-20 | 136 |
hematopoietic oligopotent progenitor cell | 5.93e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.93e-16 | 161 |
hematopoietic stem cell | 5.62e-15 | 168 |
hematopoietic cell | 7.76e-14 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.76e-44 | 98 |
blood island | 9.76e-44 | 98 |
hemolymphoid system | 6.57e-39 | 108 |
bone marrow | 6.34e-34 | 76 |
bone element | 6.04e-31 | 82 |
skeletal element | 1.38e-27 | 90 |
immune system | 1.78e-26 | 93 |
skeletal system | 3.86e-24 | 100 |
lateral plate mesoderm | 1.09e-16 | 203 |
blood | 2.58e-15 | 15 |
haemolymphatic fluid | 2.58e-15 | 15 |
organism substance | 2.58e-15 | 15 |
musculoskeletal system | 1.03e-11 | 167 |
mesoderm | 8.94e-08 | 315 |
mesoderm-derived structure | 8.94e-08 | 315 |
presumptive mesoderm | 8.94e-08 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.