FFCP PHASE1:Hg19::chr10:52178108..52178181,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=259230 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29799 | |||
|TSSclassifier=weak | |||
|UniProt=E6ZCI7 | |||
|association_with_transcript=-168bp_to_FN908146,FN985166_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_2_at_SGMS1_5end | |||
|id=chr10:52178108..52178181,- | |||
|ontology_enrichment_celltype=CL:0000839!4.06e-25!70;CL:0000557!1.27e-24!71;CL:0000860!4.81e-24!45;CL:0002009!1.29e-23!65;CL:0002057!6.39e-23!42;CL:0002194!1.99e-22!63;CL:0000576!1.99e-22!63;CL:0000040!1.99e-22!63;CL:0000559!1.99e-22!63;CL:0000766!7.60e-21!76;CL:0000763!6.05e-15!112;CL:0000049!6.05e-15!112;CL:0002031!7.13e-09!124;CL:0000134!3.18e-08!358;CL:0002320!1.70e-07!365;CL:0000738!1.84e-07!140;CL:0002087!5.76e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.63e-20;33!CL:0002057;2.63e-20;33!CL:0000473;8.93e-20;39!CL:0000234;8.93e-20;39!CL:0000576;3.45e-14;48!CL:0000766;4.30e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.67e-26,48;CL:0000234,2.67e-26,48;CL:0000839,2.93e-24,66;CL:0000557,9.41e-24,67;CL:0000860,5.23e-23,42;CL:0002057,5.23e-23,42;CL:0002009,9.10e-23,61;CL:0002194,1.41e-21,59;CL:0000576,1.41e-21,59;CL:0000040,1.41e-21,59;CL:0000559,1.41e-21,59;CL:0000766,3.11e-20,72;CL:0000763,1.69e-14,108;CL:0000049,1.69e-14,108;CL:0002031,3.73e-08,120;CL:0000134,8.17e-08,354;CL:0002320,4.40e-07,361;CL:0000738,5.76e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;5.22e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.43e-22!80;UBERON:0001474!3.92e-20!86;UBERON:0004765!5.37e-20!101;UBERON:0001434!5.37e-20!101;UBERON:0002390!1.25e-18!102;UBERON:0003061!1.25e-18!102;UBERON:0002193!1.13e-15!112;UBERON:0002405!3.84e-12!115;UBERON:0002204!4.55e-11!167;UBERON:0000062!1.61e-10!511;UBERON:0000926!3.63e-07!448;UBERON:0004120!3.63e-07!448;UBERON:0006603!3.63e-07!448;UBERON:0003081!3.85e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.75e-21,76;UBERON:0001474,3.48e-19,82;UBERON:0004765,1.05e-17,90;UBERON:0002390,1.18e-17,98;UBERON:0003061,1.18e-17,98;UBERON:0001434,1.37e-17,100;UBERON:0002405,2.36e-15,93;UBERON:0002193,1.17e-14,108;UBERON:0002204,1.34e-09,167 | |||
|phase1_expression=14.1709135831034,11.9896293378951,15.3640300464609,21.0153926541574,13.8557939272459,10.4680622892044,0,1.89515962028049,0.261185628199839,9.33788958705734,10.4670175195864,18.7859580031948,13.4521158896511,5.44571953024205,5.30235801164665,0,1.80808358407193,1.46062018077475,1.46379839637152,2.58554221961255,3.67201244239655,0.626909442956176,1.43117993565528,2.6006140763848,3.01302335027527,9.16960868975415,10.7551772179429,9.28787219501415,20.454942396143,21.1106168953467,28.0217183202098,6.43594857135249,6.32532429434325,3.32778609150109,1.62681121218633,4.12290774213522,0.293600439334847,96.9491964930785,78.8139678557657,64.0182068611763,85.5357111596511,66.0743078678718,93.2423554835755,50.0169941401703,42.3221056931467,53.6110775225074,113.65779904688,97.0356215731509,148.349351658755,171.17697343168,127.568031851492,148.510840370032,232.013843135744,149.752446591448,186.888551500192,91.1092923386207,72.3201297653291,78.2037725868894,235.684597125595,187.743480839515,207.145228758889,69.9284756395838,78.5886811029229,85.2449501065388,257.125385424925,167.946026508577,227.330120883385,149.744204493019,96.9958228261575,140.738371368916,192.517041837411,191.872648349521,227.852918957437,7.18267973460602,12.3310493979725,7.33805259279316,21.3424399178341,22.826887711909,18.9656192302555,4.27519115611873,9.34908382835724,6.02791707423292,1.75996244461323,1.63841583378639,0,1.28019066769952,0.800791974072025,1.72425731986345,1.32208974556972,0.954053754535364,0.569212969109448,1.17447437874188,2.29363936875137,0,15.1337312005015,1.84368859342554,6.49142241375649,3.93010762749165,16.2425184209612,3.67810289859492,1.95553359980154,0.946895611469467,0,4.79064964606246,82.4896540929544,70.4477784775915,67.1593582137239,8.32593578216889,10.2746884572304,0.986627427622057,0.276350017785848,0.579606171470105,0,0,0,2.60611488204402,2.68254345521345,2.06176467289578,2.02415753615602,0.637130828648193,0,0,1.50575119077773,0.76791966692651,1.24930726552346,0.473554504088034,0,0.604820229674197,1.60464117470104,1.01377082717959,0,3.35350429851818,7.54389114876829,14.4575660953827,9.5254203020819,13.9052658202391,11.1340032587154,5.35298357332899,1.51255707462509,1.10864698731282,1.93236528524877,6.22150608614135,4.00724817121796,5.93255108455087,3.8945687238562,3.13433527138681,4.12169677608482,2.8618874916641,2.28797964312051,1.11437250398869,3.57772333260069,0.860234595106124,3.12426451446835,1.69592382577203,1.25849830862972,2.47606237746061,3.13492449805216,2.32575083252396,1.42306505074684,1.00416183829401,2.81980521976403,10.6438094800592,5.6134273236079,2.57364156242108,0.81014194788176,2.58969212023831,1.34717623575702,3.60356737546631,0,0.949265659568129,1.83201743930407,3.9534125230819,0,5.23312862571041,11.9273268406876,8.23098325819768,8.07696002960635,7.74458876021797,6.38403087957043,6.72813120170769,2.1349799145941,0.98667019366864,9.33633106199299,6.46611225934503,5.5577047058576,1.51357427644931,4.60940739583999,2.10889288650417,1.24864030732128,1.1409436430889,3.58676833324323,7.51580791320095,8.09364721840658,7.02254033511243,1.63323337003915,4.05353247128834,2.27316718586684,2.37600571456411,4.69807165629258,13.6524204290704,2.15585442544872,4.04006673489759,5.12985931475053,8.03485934904131,4.82875382968922,10.4205850571667,4.5071417671979,6.91936317276128,22.4237044611077,6.62027905337559,10.5965950579781,19.2058301494017,9.68693774841326,12.8820270022815,9.49195967291108,20.928265197917,7.4052123922511,11.3595198409852,10.3095886479375,6.95078044320891,16.6854508482809,11.0827308050404,6.61286310010902,7.34391242020528,13.6373060295417,8.89094245705912,0.365921118388786,0,0.232387885739037,0.310983165046111,0.504641701751257,0,3.12899064659632,8.36213219650751,6.90674606762403,8.35862270457562,3.60939740834793,13.605282004582,16.6898843177321,14.2196507631254,16.1029200189295,12.2012488691747,18.0325670524433,12.6741429670555,10.9884020470194,11.5424147083917,1.4763109092493,5.60967095213783,7.8199062152966,2.94017422771084,3.80265104465493,4.91413608338813,0.590789906681404,0,10.2080403990784,1.20097467208968,3.18275827685014,3.37205259772859,6.73544115157927,5.37012981919472,1.3032332212413,6.23960871167747,0,0.927443239800615,2.93521735589554,1.87676382089396,0.925971025153221,1.52203321787679,11.8530659693891,14.5942647556128,104.396010581056,16.3802985597466,28.6858143217246,10.3107217385455,7.55919576894868,7.23052995936171,7.34379886163356,10.4628217865026,4.21720947081732,41.8763752211552,3.16974362447614,37.5263889128797,24.6445120343004,25.6272139855551,0,1.52795370223311,1.17217447210047,0,1.13110241973656,0,0.285826432630578,4.37311228946907,3.05172048183296,4.9870034358246,4.13669490424889,7.15312891703765,5.917119267892,2.12750493267896,4.16029747645464,2.82928111688356,4.25547396069835,2.66422179016099,4.57529579706072,1.62786481617433,2.46972101034231,6.84045987016844,4.6200953336531,5.543663110534,9.34462068884717,14.816068796205,15.0959216684906,38.9196098051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| |||
|short_description=p2@SGMS1 | |||
}} |
Revision as of 02:49, 11 January 2014
Short description: | p2@SGMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SGMS1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -168bp_to_FN908146, FN985166_5end |
EntrezGene: | SGMS1 |
HGNC: | 29799 |
UniProt: | E6ZCI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.67e-26 | 48 |
phagocyte | 2.67e-26 | 48 |
myeloid lineage restricted progenitor cell | 2.93e-24 | 66 |
granulocyte monocyte progenitor cell | 9.41e-24 | 67 |
classical monocyte | 5.23e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.23e-23 | 42 |
macrophage dendritic cell progenitor | 9.10e-23 | 61 |
monopoietic cell | 1.41e-21 | 59 |
monocyte | 1.41e-21 | 59 |
monoblast | 1.41e-21 | 59 |
promonocyte | 1.41e-21 | 59 |
myeloid leukocyte | 3.11e-20 | 72 |
myeloid cell | 1.69e-14 | 108 |
common myeloid progenitor | 1.69e-14 | 108 |
hematopoietic lineage restricted progenitor cell | 3.73e-08 | 120 |
mesenchymal cell | 8.17e-08 | 354 |
connective tissue cell | 4.40e-07 | 361 |
leukocyte | 5.76e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.75e-21 | 76 |
bone element | 3.48e-19 | 82 |
skeletal element | 1.05e-17 | 90 |
hematopoietic system | 1.18e-17 | 98 |
blood island | 1.18e-17 | 98 |
skeletal system | 1.37e-17 | 100 |
immune system | 2.36e-15 | 93 |
hemolymphoid system | 1.17e-14 | 108 |
musculoskeletal system | 1.34e-09 | 167 |