FFCP PHASE1:Hg19::chr1:17380630..17380644,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6390 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10681 | |||
|TSSclassifier=strong | |||
|UniProt=P21912 | |||
|association_with_transcript=20bp_to_ENST00000375499,NM_003000,uc001bae.2_5end | |||
|description=CAGE_peak_3_at_SDHB_5end | |||
|id=chr1:17380630..17380644,- | |||
|ontology_enrichment_celltype=CL:0002057!7.74e-19!42;CL:0000766!2.68e-17!76;CL:0002009!4.51e-17!65;CL:0002194!1.01e-16!63;CL:0000576!1.01e-16!63;CL:0000040!1.01e-16!63;CL:0000559!1.01e-16!63;CL:0000860!1.88e-16!45;CL:0000557!8.29e-13!71;CL:0000839!1.65e-12!70;CL:0002371!2.61e-12!591;CL:0000763!2.42e-10!112;CL:0000049!2.42e-10!112;CL:0000144!3.03e-10!625;CL:0000723!2.12e-09!436;CL:0000048!3.17e-09!430;CL:0000548!6.90e-09!679;CL:0000004!6.90e-09!679;CL:0000255!6.90e-09!679;CL:0000012!1.20e-08!682;CL:0000034!2.57e-08!444;CL:0000003!7.19e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.33e-14;33!CL:0002057;1.33e-14;33!CL:0000473;3.59e-14;39!CL:0000234;3.59e-14;39!CL:0000576;2.21e-12;48!CL:0000766;3.36e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.96e-21,48;CL:0000234,3.96e-21,48;CL:0000860,7.65e-19,42;CL:0002057,7.65e-19,42;CL:0000766,7.98e-19,72;CL:0002009,8.66e-19,61;CL:0002194,1.88e-18,59;CL:0000576,1.88e-18,59;CL:0000040,1.88e-18,59;CL:0000559,1.88e-18,59;CL:0000557,4.58e-14,67;CL:0000839,9.34e-14,66;CL:0000763,4.71e-11,108;CL:0000049,4.71e-11,108;CL:0000723,1.71e-09,433;CL:0000048,2.56e-09,427;CL:0000034,2.12e-08,441;CL:0000738,5.77e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;6.99e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!9.68e-15!216;UBERON:0002390!6.90e-13!102;UBERON:0003061!6.90e-13!102;UBERON:0002204!1.26e-12!167;UBERON:0002371!1.36e-12!80;UBERON:0002193!6.59e-12!112;UBERON:0001474!1.09e-11!86;UBERON:0004765!1.02e-09!101;UBERON:0001434!1.02e-09!101;UBERON:0002405!3.55e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,3.13e-14,203;UBERON:0002390,8.10e-14,98;UBERON:0003061,8.10e-14,98;UBERON:0002371,1.07e-13,76;UBERON:0002193,1.01e-12,108;UBERON:0001474,1.12e-12,82;UBERON:0002204,3.11e-12,167;UBERON:0004765,5.06e-12,90;UBERON:0000926,1.09e-11,315;UBERON:0004120,1.09e-11,315;UBERON:0006603,1.09e-11,315;UBERON:0002405,2.68e-10,93;UBERON:0001434,9.13e-10,100 | |||
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| |||
|short_description=p3@SDHB | |||
}} |
Revision as of 16:38, 10 January 2014
Short description: | p3@SDHB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SDHB_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000375499, NM_003000, uc001bae.2_5end |
EntrezGene: | SDHB |
HGNC: | 10681 |
UniProt: | P21912 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.96e-21 | 48 |
phagocyte | 3.96e-21 | 48 |
classical monocyte | 7.65e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.65e-19 | 42 |
myeloid leukocyte | 7.98e-19 | 72 |
macrophage dendritic cell progenitor | 8.66e-19 | 61 |
monopoietic cell | 1.88e-18 | 59 |
monocyte | 1.88e-18 | 59 |
monoblast | 1.88e-18 | 59 |
promonocyte | 1.88e-18 | 59 |
granulocyte monocyte progenitor cell | 4.58e-14 | 67 |
myeloid lineage restricted progenitor cell | 9.34e-14 | 66 |
myeloid cell | 4.71e-11 | 108 |
common myeloid progenitor | 4.71e-11 | 108 |
somatic stem cell | 1.71e-09 | 433 |
multi fate stem cell | 2.56e-09 | 427 |
stem cell | 2.12e-08 | 441 |
leukocyte | 5.77e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 3.13e-14 | 203 |
hematopoietic system | 8.10e-14 | 98 |
blood island | 8.10e-14 | 98 |
bone marrow | 1.07e-13 | 76 |
hemolymphoid system | 1.01e-12 | 108 |
bone element | 1.12e-12 | 82 |
musculoskeletal system | 3.11e-12 | 167 |
skeletal element | 5.06e-12 | 90 |
mesoderm | 1.09e-11 | 315 |
mesoderm-derived structure | 1.09e-11 | 315 |
presumptive mesoderm | 1.09e-11 | 315 |
immune system | 2.68e-10 | 93 |
skeletal system | 9.13e-10 | 100 |