FFCP PHASE1:Mm9::chr11:107408160..107408204,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=31|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:107408160..107408204,+|id=chr11:107408160..107408204,+|ontology_enrichment_celltype=CL:0002563!1.73e-07!9;CL:0002251!1.73e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,3.97e-17,9;CL:0002251,3.97e-17,9;CL:0000239,3.39e-11,6;CL:0000677,3.39e-11,6;CL:0000584,3.39e-11,6;CL:0000066,1.88e-10,25;CL:0002076,9.72e-10,15;CL:0000075,1.54e-09,7;CL:0000682,8.79e-09,3;CL:0000349,3.00e-08,3;CL:0000351,3.00e-08,3;CL:0002250,1.51e-07,3;CL:0000223,5.64e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!5.40e-11!15;UBERON:0000160!5.64e-10!43;UBERON:0001242!1.13e-09!13;UBERON:0000060!1.13e-09!13;UBERON:0001262!1.13e-09!13;UBERON:0004786!1.13e-09!13;UBERON:0000485!2.42e-08!11;UBERON:0003133!3.07e-08!24;UBERON:0005156!3.42e-08!26;UBERON:0000990!3.42e-08!26;UBERON:0004923!9.39e-08!24;UBERON:0003350!1.73e-07!9;UBERON:0004808!1.73e-07!9;UBERON:0001277!1.73e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.23e-22,15;UBERON:0004923,4.02e-21,24;UBERON:0001242,3.94e-18,13;UBERON:0001262,3.94e-18,13;UBERON:0004786,3.94e-18,13;UBERON:0003350,3.97e-17,9;UBERON:0004808,3.97e-17,9;UBERON:0001277,3.97e-17,9;UBERON:0000160,6.86e-15,31;UBERON:0000485,9.07e-14,11;UBERON:0005156,7.74e-10,26;UBERON:0000990,7.74e-10,26;UBERON:0003133,7.21e-09,24;UBERON:0005631,7.35e-09,3;UBERON:0000478,7.35e-09,3;UBERON:0000158,7.35e-09,3;UBERON:0005409,1.04e-08,47;UBERON:0003975,1.92e-08,5;UBERON:0000358,3.00e-08,3;UBERON:0000307,3.00e-08,3;UBERON:0007010,3.00e-08,3;UBERON:0004175,4.90e-07,9;UBERON:0000474,5.71e-07,9;UBERON:0007023,6.91e-07,51|phase1_expression=0.480446541314382,3.14077866875425,6.82498859084304,0.60492842261366,2.50447864973174,3.18970616632591,2.10251376535973,0.258246646883153,0,0,0,0,0.513602189793617,0.0874204024189974,0,0,0,0,0,0,0.850432901510698,0,0,2.71987118748791,1.37645568640302,3.44539178469012,4.30761996159075,1.939241094173,0.380046838912748,2.77233142735924,0.886922042621219,0,0,0,1.44425809875637,1.49611180822643,2.04169356262369,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.571301968807607,0.220868540951614,0,0,0,2.20231761998777,0.383062014255563,0.614426133024974,0.131886287730194,0,0.52091337055676,0.279182999001381,0.56276261003168,0.61119299110724,0,0.427115042397309,0.186399445825301,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.985903938436763,0,0,0,0.432982082022428,0,0,0.45673551887624,0.258937883647172,0,0,0,0,0,0.117588707135705,0,8.15743393523434,0,0,0.161766849947409,0,0,1.86391761218122,0,0,2.29911349687732,0,0,0,0.599162557619291,0,0,0.173824320192276,0,0.20778804455956,0.324482526135515,0.101839363850316,0.248813941220186,0.252722758433675,0,0.260240885925407,0.229902104433473,0,0,0.0680364991513279,0.2562274405697,0.374806898238915,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0.278047249225598,0,0.205782136407943,0.995171334092466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,2.64335026387038,1.85115396664481,0,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0.380451252225118,1.42358718463353,0.494096864172033,0.502670417600539,0.397912944082302,0.58489226135736,0,1.29682829924817,0.398282546508734,0.379335801906163,0.342745537829186,0,0.814605311381257,0,0.561086559122548,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.848725428875941,0.469380496577004,0.167506257441816,0.238043640886014,0,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0.586058432961016,0,0,0,0.780877488593277,0,0,0.222798674082394,0,0,0.292255857911312,0,0,0.425820255624806,0,0.651547837414304,2.63952196756057,0,0.242780636154981,0,0.377210159511796,0,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0,0.258717367565509,0.214337035031592,0,0,0,0,1.64270195644597,17.1583977399694,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0.164140899745061,0.874442509889552,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,0.474503990371703,0.203319467126849,0,0,0,0.269728692769641,0.0826534557253359,0,0.648074866458964,0,0.56369293868419,1.94371509857172,0.992750942742586,0.583353565032143,0.129159823477731,0,0.234714477291508,1.95306577265925,2.72634295506848,3.38217769156408,1.72818003754719,0.316011120628178,0.202725215290164,0.102710957164827,0.25984164595559,0.358053391334963,0.39736270956253,0.841368146639782,0.443068581523732,0.201932899896295,0.609654453239999,0.604957110821043,0.0974578807397524,0.288635524920988,0,0.453460767230423,3.32978930061097,1.61484941897056,2.3503846290971,0,0,3.6630324853453,1.2862102744744,3.00943262421218,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0.183843508450014,0,0.206035057238894,0,0,0.25347929989024,0,0.0936415074698824,0,0.229741875822453,0,0.347652977834566,0,0,0.441596760403192,0,0.354951612318675,0,0,0,0.169229215783353,0.548783918618318,0,0.135804113845862,0.561142271657738,0,0,0.409231043169689,0.154936841185966,0,0,0,0.214871054048298,0,0.220591419119515,0|short_description=p@chr11:107408160..107408204,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=31 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr11:107408160..107408204,+ | |||
|description=CAGE_peak_at_chr11:107408160..107408204,+ | |||
|id=chr11:107408160..107408204,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.73e-07!9;CL:0002251!1.73e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.97e-17,9;CL:0002251,3.97e-17,9;CL:0000239,3.39e-11,6;CL:0000677,3.39e-11,6;CL:0000584,3.39e-11,6;CL:0000066,1.88e-10,25;CL:0002076,9.72e-10,15;CL:0000075,1.54e-09,7;CL:0000682,8.79e-09,3;CL:0000349,3.00e-08,3;CL:0000351,3.00e-08,3;CL:0002250,1.51e-07,3;CL:0000223,5.64e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!5.40e-11!15;UBERON:0000160!5.64e-10!43;UBERON:0001242!1.13e-09!13;UBERON:0000060!1.13e-09!13;UBERON:0001262!1.13e-09!13;UBERON:0004786!1.13e-09!13;UBERON:0000485!2.42e-08!11;UBERON:0003133!3.07e-08!24;UBERON:0005156!3.42e-08!26;UBERON:0000990!3.42e-08!26;UBERON:0004923!9.39e-08!24;UBERON:0003350!1.73e-07!9;UBERON:0004808!1.73e-07!9;UBERON:0001277!1.73e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.23e-22,15;UBERON:0004923,4.02e-21,24;UBERON:0001242,3.94e-18,13;UBERON:0001262,3.94e-18,13;UBERON:0004786,3.94e-18,13;UBERON:0003350,3.97e-17,9;UBERON:0004808,3.97e-17,9;UBERON:0001277,3.97e-17,9;UBERON:0000160,6.86e-15,31;UBERON:0000485,9.07e-14,11;UBERON:0005156,7.74e-10,26;UBERON:0000990,7.74e-10,26;UBERON:0003133,7.21e-09,24;UBERON:0005631,7.35e-09,3;UBERON:0000478,7.35e-09,3;UBERON:0000158,7.35e-09,3;UBERON:0005409,1.04e-08,47;UBERON:0003975,1.92e-08,5;UBERON:0000358,3.00e-08,3;UBERON:0000307,3.00e-08,3;UBERON:0007010,3.00e-08,3;UBERON:0004175,4.90e-07,9;UBERON:0000474,5.71e-07,9;UBERON:0007023,6.91e-07,51 | |||
|phase1_expression=0.480446541314382,3.14077866875425,6.82498859084304,0.60492842261366,2.50447864973174,3.18970616632591,2.10251376535973,0.258246646883153,0,0,0,0,0.513602189793617,0.0874204024189974,0,0,0,0,0,0,0.850432901510698,0,0,2.71987118748791,1.37645568640302,3.44539178469012,4.30761996159075,1.939241094173,0.380046838912748,2.77233142735924,0.886922042621219,0,0,0,1.44425809875637,1.49611180822643,2.04169356262369,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.202316460859598,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.571301968807607,0.220868540951614,0,0,0,2.20231761998777,0.383062014255563,0.614426133024974,0.131886287730194,0,0.52091337055676,0.279182999001381,0.56276261003168,0.61119299110724,0,0.427115042397309,0.186399445825301,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0.985903938436763,0,0,0,0.432982082022428,0,0,0.45673551887624,0.258937883647172,0,0,0,0,0,0.117588707135705,0,8.15743393523434,0,0,0.161766849947409,0,0,1.86391761218122,0,0,2.29911349687732,0,0,0,0.599162557619291,0,0,0.173824320192276,0,0.20778804455956,0.324482526135515,0.101839363850316,0.248813941220186,0.252722758433675,0,0.260240885925407,0.229902104433473,0,0,0.0680364991513279,0.2562274405697,0.374806898238915,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0.278047249225598,0,0.205782136407943,0.995171334092466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,2.64335026387038,1.85115396664481,0,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0.380451252225118,1.42358718463353,0.494096864172033,0.502670417600539,0.397912944082302,0.58489226135736,0,1.29682829924817,0.398282546508734,0.379335801906163,0.342745537829186,0,0.814605311381257,0,0.561086559122548,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0.848725428875941,0.469380496577004,0.167506257441816,0.238043640886014,0,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0.586058432961016,0,0,0,0.780877488593277,0,0,0.222798674082394,0,0,0.292255857911312,0,0,0.425820255624806,0,0.651547837414304,2.63952196756057,0,0.242780636154981,0,0.377210159511796,0,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,0,0.340439605753788,0,0.258717367565509,0.214337035031592,0,0,0,0,1.64270195644597,17.1583977399694,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0.164140899745061,0.874442509889552,0.556275906031529,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,0.474503990371703,0.203319467126849,0,0,0,0.269728692769641,0.0826534557253359,0,0.648074866458964,0,0.56369293868419,1.94371509857172,0.992750942742586,0.583353565032143,0.129159823477731,0,0.234714477291508,1.95306577265925,2.72634295506848,3.38217769156408,1.72818003754719,0.316011120628178,0.202725215290164,0.102710957164827,0.25984164595559,0.358053391334963,0.39736270956253,0.841368146639782,0.443068581523732,0.201932899896295,0.609654453239999,0.604957110821043,0.0974578807397524,0.288635524920988,0,0.453460767230423,3.32978930061097,1.61484941897056,2.3503846290971,0,0,3.6630324853453,1.2862102744744,3.00943262421218,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0.183843508450014,0,0.206035057238894,0,0,0.25347929989024,0,0.0936415074698824,0,0.229741875822453,0,0.347652977834566,0,0,0.441596760403192,0,0.354951612318675,0,0,0,0.169229215783353,0.548783918618318,0,0.135804113845862,0.561142271657738,0,0,0.409231043169689,0.154936841185966,0,0,0,0.214871054048298,0,0.220591419119515,0 | |||
|short_description=p@chr11:107408160..107408204,+ | |||
}} |
Latest revision as of 08:30, 5 August 2015
Short description: | p@chr11:107408160..107408204, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:107408160..107408204, + |
Coexpression cluster: | MCL_coexpression_mm9:31 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.97e-17 | 9 |
epithelial cell of alimentary canal | 3.97e-17 | 9 |
brush border epithelial cell | 3.39e-11 | 6 |
gut absorptive cell | 3.39e-11 | 6 |
enterocyte | 3.39e-11 | 6 |
epithelial cell | 1.88e-10 | 25 |
endo-epithelial cell | 9.72e-10 | 15 |
columnar/cuboidal epithelial cell | 1.54e-09 | 7 |
M cell of gut | 8.79e-09 | 3 |
extraembryonic cell | 3.00e-08 | 3 |
trophoblast cell | 3.00e-08 | 3 |
intestinal crypt stem cell | 1.51e-07 | 3 |
endodermal cell | 5.64e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.23e-22 | 15 |
organ component layer | 4.02e-21 | 24 |
intestinal mucosa | 3.94e-18 | 13 |
wall of intestine | 3.94e-18 | 13 |
gastrointestinal system mucosa | 3.94e-18 | 13 |
epithelium of mucosa | 3.97e-17 | 9 |
gastrointestinal system epithelium | 3.97e-17 | 9 |
intestinal epithelium | 3.97e-17 | 9 |
intestine | 6.86e-15 | 31 |
simple columnar epithelium | 9.07e-14 | 11 |
reproductive structure | 7.74e-10 | 26 |
reproductive system | 7.74e-10 | 26 |
reproductive organ | 7.21e-09 | 24 |
extraembryonic membrane | 7.35e-09 | 3 |
extraembryonic structure | 7.35e-09 | 3 |
membranous layer | 7.35e-09 | 3 |
gastrointestinal system | 1.04e-08 | 47 |
internal female genitalia | 1.92e-08 | 5 |
blastocyst | 3.00e-08 | 3 |
blastula | 3.00e-08 | 3 |
cleaving embryo | 3.00e-08 | 3 |
internal genitalia | 4.90e-07 | 9 |
female reproductive system | 5.71e-07 | 9 |
adult organism | 6.91e-07 | 51 |