FFCP PHASE1:Hg19::chr4:54457644..54457659,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84708 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6657 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TBB1 | |||
|association_with_transcript=64bp_to_NM_001126328,uc003hag.3_5end | |||
|description=CAGE_peak_2_at_LNX1_5end | |||
|id=chr4:54457644..54457659,- | |||
|ontology_enrichment_celltype=CL:0000223!5.29e-10!59;CL:0002076!5.64e-09!43;CL:0000066!5.73e-09!254;CL:0000039!5.71e-08!7;CL:0000586!5.71e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;5.49e-11;7!CL:0000586;5.49e-11;7!CL:0002322;8.27e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.95e-11,7;CL:0000586,5.95e-11,7 | |||
|ontology_enrichment_development_v019=UBERON:0006595;6.34e-08;86 | |||
|ontology_enrichment_disease=DOID:305!3.05e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:5093;4.47e-07;4!DOID:1612;4.47e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.49e-08,106;DOID:5093,4.62e-07,4;DOID:1612,4.62e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.00e-18!169;UBERON:0000925!7.00e-18!169;UBERON:0006595!7.00e-18!169;UBERON:0001007!3.07e-16!155;UBERON:0001555!3.07e-16!155;UBERON:0007026!3.07e-16!155;UBERON:0004921!1.79e-15!129;UBERON:0004185!1.79e-15!129;UBERON:0000466!3.61e-13!126;UBERON:0000077!2.42e-12!130;UBERON:0000464!3.83e-12!104;UBERON:0001041!7.07e-09!98;UBERON:0002553!1.28e-08!70;UBERON:0000161!1.29e-08!35;UBERON:0001004!4.85e-08!72;UBERON:0005911!9.30e-08!82;UBERON:0000166!3.64e-07!21;UBERON:0003135!5.02e-07!11;UBERON:0005409!8.59e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.93e-15;33!UBERON:0005409;3.40e-10;22!UBERON:0000160;1.22e-08;17!UBERON:0003135;2.18e-08;11!UBERON:0001041;8.47e-08;14!UBERON:0000922;1.16e-07;49!UBERON:0001044;6.47e-07;6!UBERON:0003293;6.47e-07;6!UBERON:0003294;6.47e-07;6!UBERON:0010047;6.47e-07;6!UBERON:0003408;6.47e-07;6!UBERON:0000167;6.47e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,9.77e-15,118;UBERON:0001007,2.65e-13,145;UBERON:0001555,2.65e-13,145;UBERON:0007026,2.65e-13,145;UBERON:0004119,3.48e-12,160;UBERON:0000925,3.48e-12,160;UBERON:0006595,3.48e-12,160;UBERON:0000160,1.02e-08,17;UBERON:0005409,1.33e-08,25;UBERON:0003135,2.07e-08,11;UBERON:0001041,3.04e-07,87;UBERON:0001044,6.36e-07,6;UBERON:0003293,6.36e-07,6;UBERON:0003294,6.36e-07,6;UBERON:0010047,6.36e-07,6;UBERON:0000167,6.36e-07,6;UBERON:0005177,8.16e-07,101;UBERON:0003133,9.22e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0,0,0,0,0,0,0,1.0429658368404,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,2.94702919869853,0.728590576585084,1.85392221392215,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357198913136319,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0,0.573609190778008,3.17131635936948,1.06023814657188,2.78865462886844,3.21349270547648,2.52320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0,5.04252598026766,0.171567810298526,0,0,0.100528972411631,0.740707561268237,0,0,0,0.231860809950154,0,0,0,0,7.11183958163348,7.72637545885385,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0.414656231081544,0.432359860250884,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.99972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.68039413080624,0.200506470303285,1.10497186723076,0,0,0,0,2.0794141018192,1.56869953835371,1.46139224653261,2.00548094896464,0,0,0,0,0,0,1.52925763827023,2.49322802678617,0.223874754722178,0,0,1.02580050046556,1.31205858279882,0,8.03719890852234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384380134730212,0.638063562472921,0.4046311234222,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,2.01090682660736,1.08890984861323,11.2972560932135,0.43050537267123,1.68471475667626,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,4.16568367167754,0,24.0929585670663,0,0,0,0,1.48171507906718,0,0.280797178113459,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,2.81974010175699,0.37428108081644,0,0,1.00299045849731,0,1.43246690842614,0.890894042497916,0.307160702099232,0,0,0,0,0,2.78947183551498,0.828851746593443,5.03865495708552,0,5.78498585667027,0,0.269605053441981,1.61119057208048,0,3.25523238601881,0,0,0,0,0,8.33368835472746,9.09583999960435,0,0.796554137998498,5.84783395673362,0.236387681767936,0,0,0,0,0,0,0,0,0,0,5.29810228258692,4.07836370070124,0,2.07507513949254,8.61673386333812,10.1042055887468,2.87101043758728,3.75550132947635,0.533034776018635,0,0,1.49590513710141,0.225595660617181,0.392125068635479,0.335643173951685,0.75901493089674,3.81447789552909,0,0,4.52329828588611,0,6.96683351754953,13.5340073690109,15.8867837682743,0,0,0,0.067401132980677,0,0,1.82454789215666,11.3485478980612,0,11.4429476826323,14.5188859258397,0,0.126373159256976,0,0,0,0,0,0,0,0,0,2.05784034570193,0,5.76598005198699,0,0,0,0,22.6954298582901,0,2.25980740780532,0,0,0,1.75996244461323,0.160317640503067,6.83049583165928,0,1.00863292007874,0,10.2956998717179,0,0,1.64985824231757,0,0,0,0,0,0,0,1.71906176567983,0,0.279282401272254,0,0,1.19807400299395,0.429226048136571,0,0.806201669840715,0,25.6291088960398,0,0,0,0.295282444544246,0,0,0.544813624446302,3.53656926623042,3.43848591493084,2.9080823662043,1.799791132412,10.0594254092533,0,2.34804281319486,10.9539933145885,15.4216489116894,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,3.07759690723973,1.32506888912221,0,0,0,2.81926008926669,1.38823636338003,1.41483874589699,0.828478110694391,0,0,9.0126522801863,5.10673006216145,0,0,0,0,19.3176538387788,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901545653983311,0.380805212168795,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0,0,0,0,0,0,0,0,0,0,4.02194899506392,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,2.06110208852154,0.707818340086442,0.366857197043358,0.115525666150338,0,0,0,0.977734268540344,0,12.5042241797295,8.64292091788694,0,4.73139475894545,0.0675375846183947,0,0,0,0,27.9611461097163,1.48863353516788,0,16.098065882589,0,0,3.64179362541979,5.91921697513374,18.0065811430157,0.230467975111559,0,0,0,0,0.778619813244484,2.90424443546902,0,3.64353812307926,1.82631744101899,0,0,0.428859265059938,0,0,0,0,1.45051314914126,0.3414369541879,3.45629830907046,54.208647211355,0,0,13.1249985559188,6.4149923192334,0,0,3.24380752213598,3.63155864376399,0.609589624911347,0,0,0,3.88568794447312,12.3987915634916,0,0,17.2807505519609,0,20.0780581943676,16.669618151316,8.08670373864642,25.8674512998838,0.245148321753905,5.65623713043902,0,0,0,0,0,0.128915775947154,0,0.535661815816973,0,2.88868920081006,8.03370027071169,17.8904420527771,0,0,0,0,13.225671012885,0,0,0,1.00933139868063,2.62237372712869,0.253397002022874,3.365631381485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| |||
|short_description=p2@LNX1 | |||
}} |
Revision as of 01:03, 22 January 2014
Short description: | p2@LNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LNX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 64bp_to_NM_001126328, uc003hag.3_5end |
EntrezGene: | LNX1 |
HGNC: | 6657 |
UniProt: | Q8TBB1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.95e-11 | 7 |
germ cell | 5.95e-11 | 7 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 9.77e-15 | 118 |
digestive system | 2.65e-13 | 145 |
digestive tract | 2.65e-13 | 145 |
primitive gut | 2.65e-13 | 145 |
endoderm-derived structure | 3.48e-12 | 160 |
endoderm | 3.48e-12 | 160 |
presumptive endoderm | 3.48e-12 | 160 |
intestine | 1.02e-08 | 17 |
gastrointestinal system | 1.33e-08 | 25 |
male reproductive organ | 2.07e-08 | 11 |
foregut | 3.04e-07 | 87 |
saliva-secreting gland | 6.36e-07 | 6 |
gland of oral region | 6.36e-07 | 6 |
gland of foregut | 6.36e-07 | 6 |
oral gland | 6.36e-07 | 6 |
oral cavity | 6.36e-07 | 6 |
trunk region element | 8.16e-07 | 101 |
reproductive organ | 9.22e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.49e-08 | 106 |
thoracic cancer | 4.62e-07 | 4 |
breast cancer | 4.62e-07 | 4 |