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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007870
|DRA_sample_Accession=CAGE@DRS007870
|accession_numbers=CAGE;DRX007976;DRR008848;DRZ000273;DRZ001658
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002320,CL:0002371,CL:0000766,CL:0000219,CL:0000054,CL:0000738,CL:0000255,CL:0002092,CL:0000137,CL:0000092
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002320,CL:0002371,CL:0000766,CL:0000219,CL:0000054,CL:0000738,CL:0000255,CL:0002092,CL:0000137,CL:0000092
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000210;;FF:0100969
|is_a=EFO:0002091;;FF:0000210;;FF:0100969
|is_obsolete=
|is_obsolete=
|library_id=CNhs11835
|library_ids=CNhs11835
|library_ids=CNhs11835
|name=osteoclastoma cell line:Hs 706.T
|name=osteoclastoma cell line:Hs 706.T
Line 87: Line 89:
|top_motifs=TAL1_TCF{3,4,12}:2.14352434187;NKX3-1:2.10128903917;PPARG:2.06061635208;EVI1:2.017481083;EN1,2:1.59306728583;ESR1:1.54344577134;HOX{A5,B5}:1.2425766273;AIRE:1.19809570799;GLI1..3:1.18410705753;NR6A1:1.15383727785;GTF2A1,2:1.150598869;HOX{A4,D4}:1.1067471792;FOXD3:1.01801942603;MYBL2:1.01332922197;HMGA1,2:0.973010108713;HBP1_HMGB_SSRP1_UBTF:0.960938406709;POU5F1:0.944796409927;ZNF384:0.936319129788;MYB:0.886591497601;MTE{core}:0.877139302939;VSX1,2:0.835202644439;UFEwm:0.826965645591;TEAD1:0.822062429521;ADNP_IRX_SIX_ZHX:0.82099582318;ZBTB16:0.790517350022;RXR{A,B,G}:0.786988403745;TFCP2:0.786411655313;PAX3,7:0.775996480525;FOXA2:0.759818795198;NFATC1..3:0.734526110315;TFAP2B:0.733751838921;TP53:0.731201028777;PAX8:0.730449379318;PDX1:0.728442889236;NR3C1:0.725809344931;ATF6:0.725028866639;NFE2L1:0.699807631611;TFDP1:0.690843528423;NKX3-2:0.681847360904;XBP1:0.643974386863;NKX2-2,8:0.640910038249;DBP:0.630454509009;PAX4:0.62898072976;ZNF148:0.615395113965;HIC1:0.600828751791;POU3F1..4:0.569589809315;MAFB:0.563476656861;HES1:0.559067766594;SPZ1:0.536928832446;ZIC1..3:0.507711716918;TEF:0.504440461109;FOXL1:0.481041019102;NR1H4:0.47135520368;HIF1A:0.471349089491;MAZ:0.455397671158;LEF1_TCF7_TCF7L1,2:0.43296440216;EBF1:0.424819104933;POU6F1:0.423202921646;GTF2I:0.419937331356;MEF2{A,B,C,D}:0.412483206664;HLF:0.401252919284;SRF:0.384526976658;NKX2-1,4:0.374322103979;TLX1..3_NFIC{dimer}:0.370858798724;SMAD1..7,9:0.369951128105;ZBTB6:0.357507199056;FOX{D1,D2}:0.348618456051;POU1F1:0.348514040631;RFX1:0.346687994027;EGR1..3:0.311967368141;IKZF1:0.307828291709;MED-1{core}:0.306522314806;T:0.304570574963;HSF1,2:0.275502508329;NFE2L2:0.245837506625;GCM1,2:0.245199189179;TOPORS:0.2403473616;TBX4,5:0.239356357837;XCPE1{core}:0.224228184404;NFIX:0.213309652513;GFI1B:0.204076521529;OCT4_SOX2{dimer}:0.201572414977;NHLH1,2:0.191888952672;ZFP161:0.187854067117;KLF4:0.17252676361;GATA4:0.171742384041;STAT2,4,6:0.168358336145;TFAP4:0.163141252086;MZF1:0.162482868102;SOX17:0.154354892613;FOX{I1,J2}:0.149266171137;ZNF423:0.148714942131;BACH2:0.13932184435;ZNF143:0.138752122175;ZNF238:0.114463456797;MYFfamily:0.108488545002;CDX1,2,4:0.0844013095136;TFAP2{A,C}:0.0655131529111;FOXO1,3,4:0.0591371780557;DMAP1_NCOR{1,2}_SMARC:0.0578499558823;FOXP3:0.0414093016938;PRDM1:0.0290485480331;NANOG{mouse}:0.00802619063816;FOSL2:-0.00982271329937;FOXN1:-0.0111323795004;FOS_FOS{B,L1}_JUN{B,D}:-0.0164136842653;HMX1:-0.0201763177824;NFIL3:-0.0252108329095;HNF1A:-0.0361435816755;NFE2:-0.0483097998083;JUN:-0.049840007271;ELK1,4_GABP{A,B1}:-0.0633741740371;ONECUT1,2:-0.0679127599575;PAX5:-0.071664951352;FOXP1:-0.0844174021711;CDC5L:-0.0858351629704;GZF1:-0.105416946428;STAT5{A,B}:-0.106924584473;MTF1:-0.10810921382;CREB1:-0.114756720366;RUNX1..3:-0.119974404039;RXRA_VDR{dimer}:-0.121856926066;NRF1:-0.162201416321;IRF1,2:-0.188542012156;NR5A1,2:-0.1885767896;BPTF:-0.196491854671;REST:-0.198989114939;E2F1..5:-0.206397532132;TBP:-0.221847552564;TLX2:-0.228540164233;HAND1,2:-0.232931013434;SOX5:-0.23840417322;ALX4:-0.251637777924;FOX{F1,F2,J1}:-0.256747683825;bHLH_family:-0.262641616292;PAX2:-0.276526251506;NKX2-3_NKX2-5:-0.277066115383;PATZ1:-0.278586404231;ATF4:-0.283912811269;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.284739646884;CEBPA,B_DDIT3:-0.297186127856;SOX2:-0.297327128688;AR:-0.303547333416;CUX2:-0.306773825389;FOXM1:-0.307539931417;YY1:-0.309837651231;SREBF1,2:-0.318971303529;IRF7:-0.330448750423;GFI1:-0.355800375579;ETS1,2:-0.386502434156;SP1:-0.387920323425;RFX2..5_RFXANK_RFXAP:-0.388386547602;NANOG:-0.395174523434;NFKB1_REL_RELA:-0.406340774816;LHX3,4:-0.410179495344;ATF2:-0.414252455697;AHR_ARNT_ARNT2:-0.425925958379;PRRX1,2:-0.445745554742;PITX1..3:-0.451356020718;ELF1,2,4:-0.482063495786;PAX6:-0.482979671931;RORA:-0.487016218842;HOXA9_MEIS1:-0.492881807861;CRX:-0.504779147488;NFY{A,B,C}:-0.505283603219;SPI1:-0.538844984218;ARID5B:-0.580450805682;GATA6:-0.599481749037;RREB1:-0.638429858523;ATF5_CREB3:-0.639788818255;SPIB:-0.647090715897;EP300:-0.718560467067;BREu{core}:-0.720222527893;ESRRA:-0.743905425746;SOX{8,9,10}:-0.811836431708;HNF4A_NR2F1,2:-0.898540144934;POU2F1..3:-0.925467912283;FOXQ1:-0.933579537201;HOX{A6,A7,B6,B7}:-0.944664783276;SNAI1..3:-0.96125911223;IKZF2:-1.04902136392;STAT1,3:-1.0805354553;ALX1:-1.09027638195;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.13143071593;RBPJ:-1.16542258146;TGIF1:-1.18074391817;ZEB1:-1.19262970462;LMO2:-1.27663176225;PAX1,9:-1.27775893943;NKX6-1,2:-1.57009323622;PBX1:-1.5842759712;MYOD1:-1.69963601367
|top_motifs=TAL1_TCF{3,4,12}:2.14352434187;NKX3-1:2.10128903917;PPARG:2.06061635208;EVI1:2.017481083;EN1,2:1.59306728583;ESR1:1.54344577134;HOX{A5,B5}:1.2425766273;AIRE:1.19809570799;GLI1..3:1.18410705753;NR6A1:1.15383727785;GTF2A1,2:1.150598869;HOX{A4,D4}:1.1067471792;FOXD3:1.01801942603;MYBL2:1.01332922197;HMGA1,2:0.973010108713;HBP1_HMGB_SSRP1_UBTF:0.960938406709;POU5F1:0.944796409927;ZNF384:0.936319129788;MYB:0.886591497601;MTE{core}:0.877139302939;VSX1,2:0.835202644439;UFEwm:0.826965645591;TEAD1:0.822062429521;ADNP_IRX_SIX_ZHX:0.82099582318;ZBTB16:0.790517350022;RXR{A,B,G}:0.786988403745;TFCP2:0.786411655313;PAX3,7:0.775996480525;FOXA2:0.759818795198;NFATC1..3:0.734526110315;TFAP2B:0.733751838921;TP53:0.731201028777;PAX8:0.730449379318;PDX1:0.728442889236;NR3C1:0.725809344931;ATF6:0.725028866639;NFE2L1:0.699807631611;TFDP1:0.690843528423;NKX3-2:0.681847360904;XBP1:0.643974386863;NKX2-2,8:0.640910038249;DBP:0.630454509009;PAX4:0.62898072976;ZNF148:0.615395113965;HIC1:0.600828751791;POU3F1..4:0.569589809315;MAFB:0.563476656861;HES1:0.559067766594;SPZ1:0.536928832446;ZIC1..3:0.507711716918;TEF:0.504440461109;FOXL1:0.481041019102;NR1H4:0.47135520368;HIF1A:0.471349089491;MAZ:0.455397671158;LEF1_TCF7_TCF7L1,2:0.43296440216;EBF1:0.424819104933;POU6F1:0.423202921646;GTF2I:0.419937331356;MEF2{A,B,C,D}:0.412483206664;HLF:0.401252919284;SRF:0.384526976658;NKX2-1,4:0.374322103979;TLX1..3_NFIC{dimer}:0.370858798724;SMAD1..7,9:0.369951128105;ZBTB6:0.357507199056;FOX{D1,D2}:0.348618456051;POU1F1:0.348514040631;RFX1:0.346687994027;EGR1..3:0.311967368141;IKZF1:0.307828291709;MED-1{core}:0.306522314806;T:0.304570574963;HSF1,2:0.275502508329;NFE2L2:0.245837506625;GCM1,2:0.245199189179;TOPORS:0.2403473616;TBX4,5:0.239356357837;XCPE1{core}:0.224228184404;NFIX:0.213309652513;GFI1B:0.204076521529;OCT4_SOX2{dimer}:0.201572414977;NHLH1,2:0.191888952672;ZFP161:0.187854067117;KLF4:0.17252676361;GATA4:0.171742384041;STAT2,4,6:0.168358336145;TFAP4:0.163141252086;MZF1:0.162482868102;SOX17:0.154354892613;FOX{I1,J2}:0.149266171137;ZNF423:0.148714942131;BACH2:0.13932184435;ZNF143:0.138752122175;ZNF238:0.114463456797;MYFfamily:0.108488545002;CDX1,2,4:0.0844013095136;TFAP2{A,C}:0.0655131529111;FOXO1,3,4:0.0591371780557;DMAP1_NCOR{1,2}_SMARC:0.0578499558823;FOXP3:0.0414093016938;PRDM1:0.0290485480331;NANOG{mouse}:0.00802619063816;FOSL2:-0.00982271329937;FOXN1:-0.0111323795004;FOS_FOS{B,L1}_JUN{B,D}:-0.0164136842653;HMX1:-0.0201763177824;NFIL3:-0.0252108329095;HNF1A:-0.0361435816755;NFE2:-0.0483097998083;JUN:-0.049840007271;ELK1,4_GABP{A,B1}:-0.0633741740371;ONECUT1,2:-0.0679127599575;PAX5:-0.071664951352;FOXP1:-0.0844174021711;CDC5L:-0.0858351629704;GZF1:-0.105416946428;STAT5{A,B}:-0.106924584473;MTF1:-0.10810921382;CREB1:-0.114756720366;RUNX1..3:-0.119974404039;RXRA_VDR{dimer}:-0.121856926066;NRF1:-0.162201416321;IRF1,2:-0.188542012156;NR5A1,2:-0.1885767896;BPTF:-0.196491854671;REST:-0.198989114939;E2F1..5:-0.206397532132;TBP:-0.221847552564;TLX2:-0.228540164233;HAND1,2:-0.232931013434;SOX5:-0.23840417322;ALX4:-0.251637777924;FOX{F1,F2,J1}:-0.256747683825;bHLH_family:-0.262641616292;PAX2:-0.276526251506;NKX2-3_NKX2-5:-0.277066115383;PATZ1:-0.278586404231;ATF4:-0.283912811269;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.284739646884;CEBPA,B_DDIT3:-0.297186127856;SOX2:-0.297327128688;AR:-0.303547333416;CUX2:-0.306773825389;FOXM1:-0.307539931417;YY1:-0.309837651231;SREBF1,2:-0.318971303529;IRF7:-0.330448750423;GFI1:-0.355800375579;ETS1,2:-0.386502434156;SP1:-0.387920323425;RFX2..5_RFXANK_RFXAP:-0.388386547602;NANOG:-0.395174523434;NFKB1_REL_RELA:-0.406340774816;LHX3,4:-0.410179495344;ATF2:-0.414252455697;AHR_ARNT_ARNT2:-0.425925958379;PRRX1,2:-0.445745554742;PITX1..3:-0.451356020718;ELF1,2,4:-0.482063495786;PAX6:-0.482979671931;RORA:-0.487016218842;HOXA9_MEIS1:-0.492881807861;CRX:-0.504779147488;NFY{A,B,C}:-0.505283603219;SPI1:-0.538844984218;ARID5B:-0.580450805682;GATA6:-0.599481749037;RREB1:-0.638429858523;ATF5_CREB3:-0.639788818255;SPIB:-0.647090715897;EP300:-0.718560467067;BREu{core}:-0.720222527893;ESRRA:-0.743905425746;SOX{8,9,10}:-0.811836431708;HNF4A_NR2F1,2:-0.898540144934;POU2F1..3:-0.925467912283;FOXQ1:-0.933579537201;HOX{A6,A7,B6,B7}:-0.944664783276;SNAI1..3:-0.96125911223;IKZF2:-1.04902136392;STAT1,3:-1.0805354553;ALX1:-1.09027638195;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.13143071593;RBPJ:-1.16542258146;TGIF1:-1.18074391817;ZEB1:-1.19262970462;LMO2:-1.27663176225;PAX1,9:-1.27775893943;NKX6-1,2:-1.57009323622;PBX1:-1.5842759712;MYOD1:-1.69963601367
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007870
|accession_numbers=DRX007976;DRR008848;DRZ000273;DRZ001658;CAGE
|library_id=CNhs11835
}}
}}

Revision as of 17:55, 17 October 2013


Name:osteoclastoma cell line:Hs 706.T
Species:Human (Homo sapiens)
Library ID:CNhs11835
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebone
dev stageNA
sexfemale
age16
cell typeosteoclast
cell lineHs 706.T
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007870
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11835 CAGE DRX007976 DRR008848
Accession ID Hg19

Library idBAMCTSS
CNhs11835 DRZ000273 DRZ001658
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0386
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.402
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0554
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.246
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0079
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.058
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.106
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0185
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.155
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0809
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.246
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.14
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.331
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.517
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.682
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.007
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.608
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11835

Jaspar motifP-value
MA0002.20.672
MA0003.10.473
MA0004.10.143
MA0006.10.0302
MA0007.10.467
MA0009.10.193
MA0014.10.345
MA0017.10.17
MA0018.20.0242
MA0019.10.32
MA0024.10.00871
MA0025.10.353
MA0027.10.737
MA0028.10.0393
MA0029.10.0873
MA0030.10.691
MA0031.10.428
MA0035.20.0355
MA0038.10.123
MA0039.20.0267
MA0040.10.392
MA0041.10.437
MA0042.10.592
MA0043.15.19187e-4
MA0046.10.958
MA0047.20.469
MA0048.10.00373
MA0050.10.0622
MA0051.10.0802
MA0052.10.267
MA0055.10.597
MA0057.10.798
MA0058.10.0312
MA0059.10.806
MA0060.19.69806e-4
MA0061.10.143
MA0062.26.98477e-5
MA0065.20.101
MA0066.10.942
MA0067.10.145
MA0068.10.484
MA0069.10.326
MA0070.10.617
MA0071.10.937
MA0072.10.86
MA0073.10.39
MA0074.10.506
MA0076.10.013
MA0077.10.177
MA0078.10.73
MA0079.20.732
MA0080.21.4565e-8
MA0081.10.00463
MA0083.10.1
MA0084.10.112
MA0087.10.867
MA0088.10.237
MA0090.12.19296e-5
MA0091.10.687
MA0092.10.889
MA0093.10.196
MA0099.20.509
MA0100.10.0673
MA0101.10.00486
MA0102.22.20757e-4
MA0103.18.15945e-5
MA0104.20.0111
MA0105.10.0557
MA0106.10.0227
MA0107.10.0191
MA0108.20.00847
MA0111.10.327
MA0112.20.863
MA0113.10.557
MA0114.10.123
MA0115.10.367
MA0116.10.347
MA0117.10.186
MA0119.10.575
MA0122.10.678
MA0124.10.127
MA0125.10.0643
MA0131.10.252
MA0135.10.0428
MA0136.15.15864e-10
MA0137.20.637
MA0138.20.962
MA0139.10.291
MA0140.10.321
MA0141.10.525
MA0142.10.171
MA0143.10.376
MA0144.10.485
MA0145.10.772
MA0146.10.847
MA0147.10.0691
MA0148.10.807
MA0149.10.32
MA0150.10.633
MA0152.10.0401
MA0153.10.579
MA0154.10.422
MA0155.10.386
MA0156.13.67813e-4
MA0157.10.704
MA0159.10.778
MA0160.10.307
MA0162.10.827
MA0163.10.0863
MA0164.10.798
MA0258.10.87
MA0259.10.196



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11835

Novel motifP-value
10.504
100.993
1000.781
1010.712
1020.246
1030.223
1040.285
1050.346
1060.65
1070.497
1080.505
1090.581
110.73
1100.632
1110.468
1120.678
1130.0709
1140.693
1150.667
1160.391
1170.885
1180.374
1190.475
120.369
1200.842
1210.696
1220.409
1230.0851
1240.635
1250.618
1260.724
1270.49
1280.565
1290.354
130.025
1300.56
1310.922
1320.761
1330.799
1340.0615
1350.445
1360.473
1370.405
1380.637
1390.615
140.241
1400.419
1410.485
1420.896
1430.209
1440.449
1450.674
1460.529
1470.0911
1480.355
1490.985
150.397
1500.748
1510.818
1520.0668
1530.987
1540.325
1550.104
1560.474
1570.37
1580.138
1590.182
160.0411
1600.26
1610.95
1620.306
1630.434
1640.731
1650.802
1660.179
1670.822
1680.188
1690.763
170.544
180.0166
190.125
20.531
200.866
210.247
220.407
230.0808
240.342
250.366
260.64
270.586
280.911
290.909
30.783
300.757
310.65
325.25649e-19
330.855
340.988
350.94
360.347
370.406
380.264
390.595
40.66
400.262
410.47
420.518
430.5
440.827
450.751
460.339
470.419
480.968
490.884
50.123
500.615
510.397
520.948
530.104
540.56
550.175
560.924
570.481
580.145
590.0277
60.565
600.994
610.203
620.987
630.552
640.889
650.769
660.565
670.0275
680.383
690.492
70.282
700.156
710.606
720.197
730.0468
740.0144
750.798
760.194
770.111
780.239
790.0514
80.207
800.764
810.693
820.684
830.409
840.447
850.375
860.726
870.396
880.822
890.681
90.88
900.24
910.494
920.746
930.445
940.409
950.599
960.839
970.247
980.321
990.521



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11835


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000054 (bone matrix secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)
0000137 (osteocyte)
0000092 (osteoclast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
7 (disease of anatomical entity)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
200 (giant cell tumor)
4305 (bone giant cell tumor)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100372 (bone cancer cell)
0100969 (osteoclastoma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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