Personal tools

FF:11341-117F9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008113
|DRA_sample_Accession=CAGE@DRS008113
|accession_numbers=CAGE;DRX008221;DRR009093;DRZ000518;DRZ001903
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000047
|is_a=EFO:0002091;;FF:0000047
|is_obsolete=
|is_obsolete=
|library_id=CNhs11977
|library_ids=CNhs11977
|library_ids=CNhs11977
|name=Endothelial Cells - Artery, donor2
|name=Endothelial Cells - Artery, donor2
Line 87: Line 89:
|top_motifs=RXR{A,B,G}:2.26117470982;SOX{8,9,10}:1.70104427309;FOX{I1,J2}:1.28684926112;UFEwm:1.27606046994;ARID5B:1.21331223419;ONECUT1,2:1.19751532649;AR:1.18894303467;IKZF1:1.13014456874;NKX2-2,8:1.05900285289;NR3C1:1.04298074304;IKZF2:1.03437493561;NFATC1..3:1.01680790857;TLX1..3_NFIC{dimer}:0.951026050754;SPZ1:0.913334546203;HES1:0.883048061882;ZNF148:0.879217155054;PAX5:0.837596682281;XCPE1{core}:0.830826445851;SOX5:0.762668442652;SOX2:0.715615026377;bHLH_family:0.677740163861;ZIC1..3:0.670025194511;ZNF423:0.65597157896;FOXL1:0.643071900882;FOXM1:0.624482315527;GTF2A1,2:0.616807627386;NFE2L1:0.609481043334;TFAP2{A,C}:0.608604622564;ZBTB6:0.59451514093;PAX6:0.575892401401;HIC1:0.551270939209;TP53:0.496424478163;ELF1,2,4:0.491672415875;EBF1:0.473146565429;KLF4:0.465622113582;FOXD3:0.463665175159;GATA4:0.462264618194;TFDP1:0.441704171287;POU3F1..4:0.438951099452;TFAP4:0.436223616444;PAX1,9:0.435554550422;ETS1,2:0.43235327928;HAND1,2:0.414488626261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.393752366877;MYB:0.380790258042;GATA6:0.379436545433;PAX8:0.353686177167;ESRRA:0.350766435764;SPIB:0.340320126066;PPARG:0.335850932739;ZFP161:0.29745801145;CDC5L:0.287212921978;GZF1:0.27513317149;ALX4:0.242655562185;PITX1..3:0.229598026968;HNF4A_NR2F1,2:0.228414068249;LHX3,4:0.225124259615;E2F1..5:0.204207373867;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.201822968985;TFAP2B:0.199161333716;ZNF143:0.171331688416;BACH2:0.168876320986;SMAD1..7,9:0.166329009367;EN1,2:0.161851003473;TEAD1:0.144696846949;MTE{core}:0.138833288585;SOX17:0.125009983149;EVI1:0.106443765663;RXRA_VDR{dimer}:0.105253222448;STAT5{A,B}:0.101683368581;HOXA9_MEIS1:0.0983692242129;PATZ1:0.0770837816328;SPI1:0.0755709245731;LMO2:0.0734332989162;REST:0.0647822432071;GCM1,2:0.0437979250582;SP1:0.0406571651361;TEF:0.0204113473533;YY1:0.0153810766203;T:0.0132104305316;SRF:0.00568928724571;STAT2,4,6:0.00489738195301;NR5A1,2:0.000272820301258;LEF1_TCF7_TCF7L1,2:-0.0156504149038;MYOD1:-0.0190810521913;MTF1:-0.0202805570811;TBP:-0.0211952482563;GTF2I:-0.0403074375169;HOX{A5,B5}:-0.0618748315436;FOS_FOS{B,L1}_JUN{B,D}:-0.0690537701366;NFY{A,B,C}:-0.0712105121146;EGR1..3:-0.0795749318434;RBPJ:-0.0844542128922;NFE2:-0.102937677176;POU2F1..3:-0.104916553636;PRDM1:-0.117705448759;FOSL2:-0.122994216267;TFCP2:-0.127700207334;DMAP1_NCOR{1,2}_SMARC:-0.131729146938;ATF6:-0.148561452524;NRF1:-0.150166362914;GFI1B:-0.165232299433;NFE2L2:-0.182698797819;ALX1:-0.191152421363;MZF1:-0.192062243239;AIRE:-0.199912079013;NKX3-2:-0.200763360834;MED-1{core}:-0.203229141189;FOXA2:-0.20386281244;GFI1:-0.217731154729;MAZ:-0.221021169345;ADNP_IRX_SIX_ZHX:-0.23688589183;HBP1_HMGB_SSRP1_UBTF:-0.237220891875;PBX1:-0.237472157199;POU6F1:-0.257967500442;RORA:-0.264115081147;HMGA1,2:-0.272468407276;RREB1:-0.287995402017;PAX4:-0.296543381856;HMX1:-0.323463817407;ESR1:-0.328766724449;NANOG{mouse}:-0.336404805676;NFKB1_REL_RELA:-0.342804483755;TBX4,5:-0.349324806026;NR6A1:-0.349760736978;BPTF:-0.351107771388;HNF1A:-0.366394604211;FOXP3:-0.390264606633;FOXQ1:-0.390385642234;CUX2:-0.399891202717;NHLH1,2:-0.409217171255;GLI1..3:-0.409392604968;ELK1,4_GABP{A,B1}:-0.420698880687;RFX1:-0.4227149441;IRF1,2:-0.429439436437;SNAI1..3:-0.434704751728;OCT4_SOX2{dimer}:-0.438206508642;ZBTB16:-0.444055526072;HSF1,2:-0.472561833731;CRX:-0.512869261596;HLF:-0.521388467371;ZNF238:-0.525619017785;NKX2-1,4:-0.538664204955;NFIL3:-0.548882354343;PRRX1,2:-0.56272396547;BREu{core}:-0.59033417067;RUNX1..3:-0.594403519934;POU1F1:-0.595996936814;IRF7:-0.602447378639;PAX3,7:-0.603458689529;NANOG:-0.618003303277;MEF2{A,B,C,D}:-0.618133487528;MYFfamily:-0.619299640478;SREBF1,2:-0.61971608694;FOXN1:-0.622632921999;NR1H4:-0.630498123142;TLX2:-0.638944223228;EP300:-0.644569206145;ZEB1:-0.647118987583;NKX3-1:-0.656857593601;CREB1:-0.669278205036;JUN:-0.686324235469;XBP1:-0.689111074107;CDX1,2,4:-0.695202081646;PAX2:-0.703052518417;NFIX:-0.706487418086;TOPORS:-0.727192912103;PDX1:-0.731539578437;FOX{F1,F2,J1}:-0.739070086239;FOX{D1,D2}:-0.739539448008;FOXP1:-0.757721746146;DBP:-0.774579241826;ZNF384:-0.775352375995;ATF4:-0.775717562842;CEBPA,B_DDIT3:-0.783651421986;POU5F1:-0.806787686964;TAL1_TCF{3,4,12}:-0.840330045634;HIF1A:-0.880557043101;MAFB:-0.889095794873;ATF2:-0.903829403893;TGIF1:-0.940123996269;AHR_ARNT_ARNT2:-0.979514630777;FOXO1,3,4:-0.994450851504;NKX6-1,2:-1.06142651291;NKX2-3_NKX2-5:-1.07378264923;STAT1,3:-1.09890306204;ATF5_CREB3:-1.12835988102;HOX{A6,A7,B6,B7}:-1.17774475341;MYBL2:-1.18113885175;RFX2..5_RFXANK_RFXAP:-1.20265212414;HOX{A4,D4}:-1.20273245968;VSX1,2:-1.25106645539
|top_motifs=RXR{A,B,G}:2.26117470982;SOX{8,9,10}:1.70104427309;FOX{I1,J2}:1.28684926112;UFEwm:1.27606046994;ARID5B:1.21331223419;ONECUT1,2:1.19751532649;AR:1.18894303467;IKZF1:1.13014456874;NKX2-2,8:1.05900285289;NR3C1:1.04298074304;IKZF2:1.03437493561;NFATC1..3:1.01680790857;TLX1..3_NFIC{dimer}:0.951026050754;SPZ1:0.913334546203;HES1:0.883048061882;ZNF148:0.879217155054;PAX5:0.837596682281;XCPE1{core}:0.830826445851;SOX5:0.762668442652;SOX2:0.715615026377;bHLH_family:0.677740163861;ZIC1..3:0.670025194511;ZNF423:0.65597157896;FOXL1:0.643071900882;FOXM1:0.624482315527;GTF2A1,2:0.616807627386;NFE2L1:0.609481043334;TFAP2{A,C}:0.608604622564;ZBTB6:0.59451514093;PAX6:0.575892401401;HIC1:0.551270939209;TP53:0.496424478163;ELF1,2,4:0.491672415875;EBF1:0.473146565429;KLF4:0.465622113582;FOXD3:0.463665175159;GATA4:0.462264618194;TFDP1:0.441704171287;POU3F1..4:0.438951099452;TFAP4:0.436223616444;PAX1,9:0.435554550422;ETS1,2:0.43235327928;HAND1,2:0.414488626261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.393752366877;MYB:0.380790258042;GATA6:0.379436545433;PAX8:0.353686177167;ESRRA:0.350766435764;SPIB:0.340320126066;PPARG:0.335850932739;ZFP161:0.29745801145;CDC5L:0.287212921978;GZF1:0.27513317149;ALX4:0.242655562185;PITX1..3:0.229598026968;HNF4A_NR2F1,2:0.228414068249;LHX3,4:0.225124259615;E2F1..5:0.204207373867;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.201822968985;TFAP2B:0.199161333716;ZNF143:0.171331688416;BACH2:0.168876320986;SMAD1..7,9:0.166329009367;EN1,2:0.161851003473;TEAD1:0.144696846949;MTE{core}:0.138833288585;SOX17:0.125009983149;EVI1:0.106443765663;RXRA_VDR{dimer}:0.105253222448;STAT5{A,B}:0.101683368581;HOXA9_MEIS1:0.0983692242129;PATZ1:0.0770837816328;SPI1:0.0755709245731;LMO2:0.0734332989162;REST:0.0647822432071;GCM1,2:0.0437979250582;SP1:0.0406571651361;TEF:0.0204113473533;YY1:0.0153810766203;T:0.0132104305316;SRF:0.00568928724571;STAT2,4,6:0.00489738195301;NR5A1,2:0.000272820301258;LEF1_TCF7_TCF7L1,2:-0.0156504149038;MYOD1:-0.0190810521913;MTF1:-0.0202805570811;TBP:-0.0211952482563;GTF2I:-0.0403074375169;HOX{A5,B5}:-0.0618748315436;FOS_FOS{B,L1}_JUN{B,D}:-0.0690537701366;NFY{A,B,C}:-0.0712105121146;EGR1..3:-0.0795749318434;RBPJ:-0.0844542128922;NFE2:-0.102937677176;POU2F1..3:-0.104916553636;PRDM1:-0.117705448759;FOSL2:-0.122994216267;TFCP2:-0.127700207334;DMAP1_NCOR{1,2}_SMARC:-0.131729146938;ATF6:-0.148561452524;NRF1:-0.150166362914;GFI1B:-0.165232299433;NFE2L2:-0.182698797819;ALX1:-0.191152421363;MZF1:-0.192062243239;AIRE:-0.199912079013;NKX3-2:-0.200763360834;MED-1{core}:-0.203229141189;FOXA2:-0.20386281244;GFI1:-0.217731154729;MAZ:-0.221021169345;ADNP_IRX_SIX_ZHX:-0.23688589183;HBP1_HMGB_SSRP1_UBTF:-0.237220891875;PBX1:-0.237472157199;POU6F1:-0.257967500442;RORA:-0.264115081147;HMGA1,2:-0.272468407276;RREB1:-0.287995402017;PAX4:-0.296543381856;HMX1:-0.323463817407;ESR1:-0.328766724449;NANOG{mouse}:-0.336404805676;NFKB1_REL_RELA:-0.342804483755;TBX4,5:-0.349324806026;NR6A1:-0.349760736978;BPTF:-0.351107771388;HNF1A:-0.366394604211;FOXP3:-0.390264606633;FOXQ1:-0.390385642234;CUX2:-0.399891202717;NHLH1,2:-0.409217171255;GLI1..3:-0.409392604968;ELK1,4_GABP{A,B1}:-0.420698880687;RFX1:-0.4227149441;IRF1,2:-0.429439436437;SNAI1..3:-0.434704751728;OCT4_SOX2{dimer}:-0.438206508642;ZBTB16:-0.444055526072;HSF1,2:-0.472561833731;CRX:-0.512869261596;HLF:-0.521388467371;ZNF238:-0.525619017785;NKX2-1,4:-0.538664204955;NFIL3:-0.548882354343;PRRX1,2:-0.56272396547;BREu{core}:-0.59033417067;RUNX1..3:-0.594403519934;POU1F1:-0.595996936814;IRF7:-0.602447378639;PAX3,7:-0.603458689529;NANOG:-0.618003303277;MEF2{A,B,C,D}:-0.618133487528;MYFfamily:-0.619299640478;SREBF1,2:-0.61971608694;FOXN1:-0.622632921999;NR1H4:-0.630498123142;TLX2:-0.638944223228;EP300:-0.644569206145;ZEB1:-0.647118987583;NKX3-1:-0.656857593601;CREB1:-0.669278205036;JUN:-0.686324235469;XBP1:-0.689111074107;CDX1,2,4:-0.695202081646;PAX2:-0.703052518417;NFIX:-0.706487418086;TOPORS:-0.727192912103;PDX1:-0.731539578437;FOX{F1,F2,J1}:-0.739070086239;FOX{D1,D2}:-0.739539448008;FOXP1:-0.757721746146;DBP:-0.774579241826;ZNF384:-0.775352375995;ATF4:-0.775717562842;CEBPA,B_DDIT3:-0.783651421986;POU5F1:-0.806787686964;TAL1_TCF{3,4,12}:-0.840330045634;HIF1A:-0.880557043101;MAFB:-0.889095794873;ATF2:-0.903829403893;TGIF1:-0.940123996269;AHR_ARNT_ARNT2:-0.979514630777;FOXO1,3,4:-0.994450851504;NKX6-1,2:-1.06142651291;NKX2-3_NKX2-5:-1.07378264923;STAT1,3:-1.09890306204;ATF5_CREB3:-1.12835988102;HOX{A6,A7,B6,B7}:-1.17774475341;MYBL2:-1.18113885175;RFX2..5_RFXANK_RFXAP:-1.20265212414;HOX{A4,D4}:-1.20273245968;VSX1,2:-1.25106645539
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008113
|accession_numbers=DRX008221;DRR009093;DRZ000518;DRZ001903;CAGE
|library_id=CNhs11977
}}
}}

Revision as of 20:08, 17 October 2013


Name:Endothelial Cells - Artery, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11977
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueartery
dev stage26 years old adult
sexmale
age26
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2463
catalog numberCA300-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008113
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11977 CAGE DRX008221 DRR009093
Accession ID Hg19

Library idBAMCTSS
CNhs11977 DRZ000518 DRZ001903
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0581
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.219
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.661
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.176
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.25
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0599
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.149
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00146
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.268
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.19
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.322
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.794
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.379
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11977

Jaspar motifP-value
MA0002.20.014
MA0003.10.449
MA0004.10.854
MA0006.10.0212
MA0007.10.0872
MA0009.10.801
MA0014.10.607
MA0017.10.33
MA0018.25.33733e-6
MA0019.10.0135
MA0024.10.753
MA0025.10.402
MA0027.10.808
MA0028.10.179
MA0029.10.747
MA0030.10.101
MA0031.10.0725
MA0035.20.0946
MA0038.10.494
MA0039.20.643
MA0040.10.293
MA0041.10.309
MA0042.10.849
MA0043.16.10315e-8
MA0046.10.352
MA0047.20.5
MA0048.10.0259
MA0050.10.016
MA0051.10.319
MA0052.10.00925
MA0055.10.0686
MA0057.10.304
MA0058.10.826
MA0059.10.0953
MA0060.10.507
MA0061.10.2
MA0062.20.0419
MA0065.20.22
MA0066.10.465
MA0067.10.025
MA0068.10.821
MA0069.10.198
MA0070.10.905
MA0071.10.355
MA0072.10.706
MA0073.10.34
MA0074.10.206
MA0076.10.0016
MA0077.14.10471e-6
MA0078.10.0107
MA0079.20.236
MA0080.20.818
MA0081.10.42
MA0083.10.351
MA0084.10.056
MA0087.10.155
MA0088.10.327
MA0090.10.714
MA0091.10.613
MA0092.10.97
MA0093.10.894
MA0099.20.379
MA0100.10.328
MA0101.10.221
MA0102.29.79626e-6
MA0103.10.425
MA0104.20.463
MA0105.10.659
MA0106.10.00955
MA0107.10.286
MA0108.20.443
MA0111.10.811
MA0112.20.702
MA0113.10.361
MA0114.10.513
MA0115.10.797
MA0116.10.116
MA0117.10.22
MA0119.10.0867
MA0122.10.497
MA0124.10.669
MA0125.10.596
MA0131.10.471
MA0135.10.667
MA0136.10.902
MA0137.20.02
MA0138.20.634
MA0139.10.107
MA0140.10.493
MA0141.10.016
MA0142.10.924
MA0143.10.807
MA0144.10.824
MA0145.10.269
MA0146.10.449
MA0147.10.885
MA0148.10.129
MA0149.10.03
MA0150.10.402
MA0152.10.468
MA0153.10.0504
MA0154.10.617
MA0155.10.147
MA0156.10.748
MA0157.10.254
MA0159.10.257
MA0160.10.951
MA0162.10.135
MA0163.10.679
MA0164.10.428
MA0258.10.986
MA0259.10.681



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11977

Novel motifP-value
10.831
100.881
1000.753
1010.1
1020.6
1030.299
1040.992
1050.137
1060.0741
1070.0188
1080.18
1090.175
110.203
1100.0405
1110.411
1120.646
1130.429
1140.341
1150.481
1160.0806
1170.632
1180.382
1190.66
120.819
1200.00104
1210.995
1220.43
1230.0143
1240.0374
1250.386
1260.492
1270.923
1280.99
1290.367
130.318
1300.752
1310.253
1320.185
1330.45
1340.0985
1350.561
1360.00902
1370.114
1380.819
1390.759
140.433
1400.35
1410.537
1420.627
1430.187
1440.396
1450.297
1460.956
1470.0832
1480.96
1490.0846
150.864
1500.0587
1510.587
1520.0207
1530.0201
1540.436
1550.885
1560.233
1570.557
1580.0396
1590.595
160.364
1600.06
1610.424
1620.729
1630.91
1640.0711
1650.326
1660.191
1670.149
1680.368
1690.0902
170.244
180.767
190.163
20.535
200.562
210.388
220.348
230.865
240.76
250.458
260.824
270.486
280.135
290.185
30.976
300.684
310.876
320.418
330.762
340.359
350.597
360.364
370.187
380.457
390.353
40.473
400.134
410.202
420.743
430.872
440.0707
450.508
460.393
470.261
480.142
490.278
50.472
500.831
510.555
520.608
530.195
540.854
550.33
560.856
570.986
580.161
590.0162
60.161
601
610.651
620.825
630.563
640.97
650.642
660.568
670.275
680.437
690.086
70.858
700.697
710.977
720.587
735.32496e-4
740.726
750.222
760.795
770.0394
780.292
790.0129
80.0178
800.693
810.573
820.857
830.118
840.0973
850.84
860.995
870.0252
880.59
890.584
90.656
900.705
910.517
920.853
930.162
940.593
950.0249
960.861
970.832
980.766
990.0154



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11977


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11341-117F9&oldid=3079075"