FF:11237-116D4: Difference between revisions

Revision as of 14:56, 15 May 2017

Name:	Fibroblast - Gingival, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10866
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	428
catalog number	SC2625
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005461

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10866		CAGE		DRX008260		DRR009132

Accession ID Hg19

Library id		BAM		CTSS
CNhs10866		DRZ000557		DRZ001942

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.128
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0672
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.207
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0245
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.275
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0807
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.347
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0628
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.29
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.017
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0823
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0273
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0807
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.00981
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0807
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.207
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.207
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.306
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10866

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.327
MA0003.1	MA0003.1	0.73
MA0004.1	MA0004.1	0.515
MA0006.1	MA0006.1	0.703
MA0007.1	MA0007.1	0.0572
MA0009.1	MA0009.1	0.569
MA0014.1	MA0014.1	0.116
MA0017.1	MA0017.1	0.463
MA0018.2	MA0018.2	4.69453e-6
MA0019.1	MA0019.1	0.0351
MA0024.1	MA0024.1	0.0826
MA0025.1	MA0025.1	6.36803e-5
MA0027.1	MA0027.1	0.162
MA0028.1	MA0028.1	0.00139
MA0029.1	MA0029.1	0.613
MA0030.1	MA0030.1	0.431
MA0031.1	MA0031.1	0.724
MA0035.2	MA0035.2	9.75224e-4
MA0038.1	MA0038.1	0.512
MA0039.2	MA0039.2	0.0867
MA0040.1	MA0040.1	0.586
MA0041.1	MA0041.1	0.445
MA0042.1	MA0042.1	0.838
MA0043.1	MA0043.1	8.48901e-4
MA0046.1	MA0046.1	0.546
MA0047.2	MA0047.2	0.364
MA0048.1	MA0048.1	0.0278
MA0050.1	MA0050.1	0.195
MA0051.1	MA0051.1	0.876
MA0052.1	MA0052.1	0.358
MA0055.1	MA0055.1	0.0526
MA0057.1	MA0057.1	0.703
MA0058.1	MA0058.1	0.545
MA0059.1	MA0059.1	0.906
MA0060.1	MA0060.1	0.512
MA0061.1	MA0061.1	0.00124
MA0062.2	MA0062.2	0.641
MA0065.2	MA0065.2	0.179
MA0066.1	MA0066.1	0.762
MA0067.1	MA0067.1	0.00977
MA0068.1	MA0068.1	0.86
MA0069.1	MA0069.1	0.243
MA0070.1	MA0070.1	0.253
MA0071.1	MA0071.1	0.587
MA0072.1	MA0072.1	0.661
MA0073.1	MA0073.1	0.581
MA0074.1	MA0074.1	0.961
MA0076.1	MA0076.1	0.0539
MA0077.1	MA0077.1	0.151
MA0078.1	MA0078.1	0.449
MA0079.2	MA0079.2	0.713
MA0080.2	MA0080.2	2.43619e-9
MA0081.1	MA0081.1	0.404
MA0083.1	MA0083.1	0.985
MA0084.1	MA0084.1	0.0214
MA0087.1	MA0087.1	0.408
MA0088.1	MA0088.1	1.30209e-4
MA0090.1	MA0090.1	0.0328
MA0091.1	MA0091.1	0.683
MA0092.1	MA0092.1	0.919
MA0093.1	MA0093.1	0.599
MA0099.2	MA0099.2	9.32491e-5
MA0100.1	MA0100.1	0.209
MA0101.1	MA0101.1	9.36289e-6
MA0102.2	MA0102.2	0.252
MA0103.1	MA0103.1	1.84525e-5
MA0104.2	MA0104.2	0.699
MA0105.1	MA0105.1	0.209
MA0106.1	MA0106.1	0.00864
MA0107.1	MA0107.1	1.78236e-8
MA0108.2	MA0108.2	9.02415e-4
MA0111.1	MA0111.1	0.169
MA0112.2	MA0112.2	0.715
MA0113.1	MA0113.1	0.0973
MA0114.1	MA0114.1	0.83
MA0115.1	MA0115.1	0.248
MA0116.1	MA0116.1	0.867
MA0117.1	MA0117.1	0.196
MA0119.1	MA0119.1	0.00464
MA0122.1	MA0122.1	0.82
MA0124.1	MA0124.1	0.0435
MA0125.1	MA0125.1	0.34
MA0131.1	MA0131.1	0.279
MA0135.1	MA0135.1	0.267
MA0136.1	MA0136.1	1.12609e-4
MA0137.2	MA0137.2	0.256
MA0138.2	MA0138.2	0.553
MA0139.1	MA0139.1	0.705
MA0140.1	MA0140.1	0.114
MA0141.1	MA0141.1	0.857
MA0142.1	MA0142.1	0.0742
MA0143.1	MA0143.1	0.501
MA0144.1	MA0144.1	0.235
MA0145.1	MA0145.1	0.447
MA0146.1	MA0146.1	0.209
MA0147.1	MA0147.1	0.904
MA0148.1	MA0148.1	0.632
MA0149.1	MA0149.1	0.697
MA0150.1	MA0150.1	0.385
MA0152.1	MA0152.1	0.291
MA0153.1	MA0153.1	0.314
MA0154.1	MA0154.1	0.486
MA0155.1	MA0155.1	0.336
MA0156.1	MA0156.1	0.00471
MA0157.1	MA0157.1	0.884
MA0159.1	MA0159.1	0.00662
MA0160.1	MA0160.1	0.401
MA0162.1	MA0162.1	0.111
MA0163.1	MA0163.1	0.225
MA0164.1	MA0164.1	0.597
MA0258.1	MA0258.1	0.923
MA0259.1	MA0259.1	0.619

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10866

Novel motif	Logo	P-value
1	1	0.891
10	10	0.197
100	100	0.964
101	101	0.773
102	102	0.362
103	103	0.889
104	104	0.75
105	105	0.79
106	106	0.0564
107	107	0.886
108	108	0.974
109	109	0.636
11	11	0.879
110	110	0.0892
111	111	0.643
112	112	0.263
113	113	7.45984e-4
114	114	0.458
115	115	0.47
116	116	0.468
117	117	0.018
118	118	0.927
119	119	0.774
12	12	0.44
120	120	0.885
121	121	0.525
122	122	0.0111
123	123	0.86
124	124	0.762
125	125	0.808
126	126	0.436
127	127	0.881
128	128	0.923
129	129	0.498
13	13	0.14
130	130	0.124
131	131	0.705
132	132	0.43
133	133	0.887
134	134	0.217
135	135	0.0315
136	136	0.729
137	137	0.194
138	138	0.592
139	139	0.0406
14	14	0.366
140	140	0.982
141	141	0.0684
142	142	0.15
143	143	0.402
144	144	0.187
145	145	0.186
146	146	0.189
147	147	0.041
148	148	0.772
149	149	0.707
15	15	0.348
150	150	0.785
151	151	0.699
152	152	0.562
153	153	0.031
154	154	0.706
155	155	0.0326
156	156	0.759
157	157	0.222
158	158	1.9784e-4
159	159	0.0497
16	16	0.818
160	160	0.967
161	161	0.567
162	162	0.702
163	163	0.612
164	164	0.199
165	165	0.541
166	166	0.98
167	167	0.824
168	168	0.871
169	169	0.0644
17	17	0.915
18	18	0.852
19	19	0.0356
2	2	0.69
20	20	0.688
21	21	0.0277
22	22	0.305
23	23	0.754
24	24	0.47
25	25	0.116
26	26	0.793
27	27	0.44
28	28	0.471
29	29	0.816
3	3	0.308
30	30	0.773
31	31	0.847
32	32	0.0648
33	33	0.583
34	34	0.309
35	35	0.227
36	36	0.0932
37	37	0.144
38	38	0.795
39	39	0.603
4	4	0.0421
40	40	0.0669
41	41	0.0887
42	42	0.25
43	43	0.923
44	44	0.034
45	45	0.797
46	46	0.714
47	47	0.439
48	48	0.991
49	49	0.988
5	5	0.738
50	50	0.0981
51	51	0.896
52	52	0.592
53	53	0.42
54	54	0.714
55	55	0.0333
56	56	0.985
57	57	0.209
58	58	0.285
59	59	0.731
6	6	0.443
60	60	0.0661
61	61	0.46
62	62	0.394
63	63	0.139
64	64	0.35
65	65	0.415
66	66	0.395
67	67	0.897
68	68	0.865
69	69	0.628
7	7	0.197
70	70	0.635
71	71	0.798
72	72	0.994
73	73	0.431
74	74	0.0595
75	75	0.868
76	76	0.25
77	77	0.176
78	78	0.277
79	79	0.373
8	8	0.547
80	80	0.13
81	81	0.776
82	82	0.244
83	83	0.488
84	84	0.344
85	85	0.252
86	86	0.829
87	87	0.0755
88	88	0.551
89	89	0.611
9	9	0.8
90	90	0.552
91	91	0.808
92	92	0.274
93	93	0.733
94	94	0.147
95	95	0.421
96	96	0.711
97	97	0.714
98	98	0.64
99	99	2.60464e-5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10866

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000063 human fibroblast of gingiva sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.00!112.08!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.72!84.11!TCF12;;chr6:34204921..34204939,+!p3@HMGA1!1.62!1141.22!HMGA1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.67!TFAP2C;;chr9:77112244..77112262,+!p1@RORB!1.54!37.56!RORB;;chr1:170633348..170633399,+!p2@PRRX1!1.53!44.10!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.49!29.60!SIX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!83.09!TWIST2;;chr14:37131058..37131139,+!p1@PAX9!1.43!25.93!PAX9;;chr16:86544113..86544145,+!p1@FOXF1!1.39!28.99!FOXF1;;chr2:19558373..19558392,-!p1@OSR1!1.36!59.41!OSR1;;chr14:61116183..61116208,-!p1@SIX1!1.35!79.42!SIX1;;chr9:96717629..96717644,-!p1@BARX1!1.35!21.23!BARX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.34!25.32!ZBTB38;;chr1:170632250..170632277,+!p7@PRRX1!1.31!19.60!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.29!32.46!ZFP106;;chr12:115122318..115122331,-!p2@TBX3!1.28!18.17!TBX3;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.96!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.40!TWIST2;;chr9:132427883..132427951,+!p2@PRRX2!1.24!16.33!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.46!CREB3L1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.22!16.54!GLIS1;;chr7:14029283..14029311,-!p1@ETV1!1.17!72.88!ETV1;;chr16:86600426..86600441,+!p1@FOXC2!1.16!33.07!FOXC2;;chr1:170633262..170633285,+!p3@PRRX1!1.14!14.70!PRRX1;;chr20:42543441..42543497,+!p1@TOX2!1.13!56.75!TOX2;;chr9:132427972..132428056,+!p1@PRRX2!1.13!16.33!PRRX2;;chr12:66218598..66218645,+!p2@HMGA2!1.12!56.14!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.92!FOXF2;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.45!PPARG;;chr3:141121847..141121868,+!p5@ZBTB38!1.06!16.13!ZBTB38;;chr2:102091144..102091183,-!p2@RFX8!1.06!10.41!RFX8;;chr3:157823517..157823562,-!p1@SHOX2!1.05!11.02!SHOX2;;chr2:102091566..102091581,-!p1@RFX8!1.04!10.00!RFX8;;chr2:45236579..45236596,-!p2@SIX2!1.03!9.60!SIX2;;chr15:57511589..57511608,+!p4@TCF12!1.02!9.39!TCF12;;chr17:59477233..59477263,+!p1@TBX2!0.97!26.74!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr14:37126765..37126799,+!p2@PAX9!0.96!8.17!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.64!HMGA2;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.78!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.95!7.96!KDM5D;;chr11:65667884..65667895,-!p2@FOSL1!0.94!30.83!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!0.93!13.27!DRAP1;;chr2:96012397..96012417,+!p3@KCNIP3!0.93!7.55!KCNIP3;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.35!PPARG;;chr12:115122303..115122314,-!p6@TBX3!0.91!7.15!TBX3;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.15!TCF4;;chr4:4861385..4861398,+!p1@MSX1!0.90!21.44!MSX1;;chr6:85474299..85474324,-!p1@TBX18!0.90!12.66!TBX18;;chr12:115121770..115121781,-!p4@TBX3!0.90!6.94!TBX3;;chr7:44143925..44143970,+!p1@AEBP1!0.89!157.81!AEBP1;;chr12:66218836..66218888,+!p1@HMGA2!0.89!65.94!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.89!17.15!PPARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.89!6.74!KCNIP3;;chr6:85473156..85473210,-!p2@TBX18!0.88!8.17!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.88!6.53!PRRX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.88!6.53!POU3F3;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.42!NR2F1;;chr7:19157043..19157088,-!p2@TWIST1!0.87!16.94!TWIST1;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.33!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.33!ZFY;;chr20:39946361..39946379,-!p2@ZHX3!0.85!19.19!ZHX3;;chrX:66763856..66763896,+!p1@AR!0.85!8.98!AR;;chr7:14029312..14029325,-!p4@ETV1!0.85!7.55!ETV1;;chr7:14028488..14028516,-!p2@ETV1!0.85!6.74!ETV1;;chr20:55205825..55205847,+!p2@TFAP2C!0.85!6.12!TFAP2C;;chr12:115121802..115121814,-!p5@TBX3!0.84!5.92!TBX3;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.92!RUNX1T1;;chr1:170632477..170632506,+!p6@PRRX1!0.83!5.72!PRRX1;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.72!FOXC2;;chr12:115121962..115121987,-!p1@TBX3!0.82!51.04!TBX3;;chr12:53614115..53614154,-!p1@RARG!0.81!31.64!RARG;;chr10:28034739..28034756,-!p1@MKX!0.81!5.51!MKX;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.51!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.31!PAX3;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.70!DRAP1;;chr19:13134457..13134462,+!p5@NFIX!0.78!9.39!NFIX;;chr2:96012353..96012378,+!p4@KCNIP3!0.77!4.90!KCNIP3;;chr1:170632723..170632739,+!p8@PRRX1!0.77!4.90!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.76!139.85!FOSL1;;chr5:92918956..92918969,+!p4@NR2F1!0.76!5.31!NR2F1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.76!4.70!RUNX1T1;;chr3:141121820..141121838,+!p9@ZBTB38!0.76!4.70!ZBTB38;;chr17:7492684..7492778,-!p2@SOX15!0.75!10.41!SOX15;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.17!CREB3L1;;chr3:141087393..141087426,+!p3@ZBTB38!0.74!19.60!ZBTB38;;chr12:85673977..85674015,+!p1@ALX1!0.74!4.49!ALX1;;chr1:75600067..75600094,+!p2@LHX8!0.74!4.49!LHX8;;chr5:321810..321877,+!p1@AHRR!0.73!15.31!AHRR;;chr5:158526917..158526932,-!p1@EBF1!0.73!11.84!EBF1;;chr18:52989031..52989079,-!p2@TCF4!0.73!11.02!TCF4;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.80!DRAP1;;chr8:116673894..116673913,-!p12@TRPS1!0.72!4.29!TRPS1;;chr1:170632310..170632321,+!p15@PRRX1!0.72!4.29!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.71!533.25!HMGA1;;chr5:158526459..158526481,-!p2@EBF1!0.71!5.72!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.71!5.10!TBX3;;chr12:66218904..66218913,+!p11@HMGA2!0.71!4.08!HMGA2;;chr18:52969674..52969685,-!p24@TCF4!0.71!4.08!TCF4;;chr17:41622765..41622821,-!p2@ETV4!0.70!6.53!ETV4;;chrX:66763815..66763854,+!p2@AR!0.70!5.51!AR;;chr11:113930425..113930471,+!p1@ZBTB16!0.69!5.92!ZBTB16;;chr6:1389989..1390019,+!p2@FOXF2!0.69!3.88!FOXF2;;chr2:172949484..172949522,+!p1@DLX1!0.69!3.88!DLX1;;chr12:66218183..66218209,+!p4@HMGA2!0.68!7.96!HMGA2;;chr1:25256756..25256774,-!p1@RUNX3!0.68!7.76!RUNX3;;chr19:53496768..53496799,-!p1@ZNF702P!0.68!6.33!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.67!5.72!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.67!5.10!TBX2;;chr2:172950227..172950249,+!p2@DLX1!0.67!3.67!DLX1;;chr6:134210243..134210257,+!p1@TCF21!0.67!3.67!TCF21;;chr12:66218923..66218934,+!p14@HMGA2!0.67!3.67!HMGA2;;chr3:141087339..141087387,+!p2@ZBTB38!0.66!42.87!ZBTB38;;chr10:31607702..31607755,+!p3@ZEB1!0.66!4.29!ZEB1;;chr12:96588143..96588185,+!p1@ELK3!0.65!49.41!ELK3;;chr20:42543506..42543549,+!p2@TOX2!0.65!9.19!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.64!7.96!SATB2;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.92!ZBTB16;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.75!HIF1A;;chr2:200322654..200322707,-!p2@SATB2!0.63!5.10!SATB2;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.27!CREB3L1;;chr12:115122262..115122271,-!p7@TBX3!0.63!3.27!TBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.61!11.64!NR2F1;;chr9:102584262..102584276,+!p1@NR4A3!0.61!7.76!NR4A3;;chr12:66218573..66218596,+!p7@HMGA2!0.61!4.90!HMGA2;;chr6:34204973..34204990,+!p4@HMGA1!0.60!48.59!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.60!38.59!AHR;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.30!IFI16;;chr14:61116168..61116180,-!p2@SIX1!0.60!3.47!SIX1;;chr12:96588219..96588263,+!p2@ELK3!0.59!24.91!ELK3;;chr5:124082322..124082364,-!p1@ZNF608!0.59!8.57!ZNF608;;chr1:170632439..170632465,+!p11@PRRX1!0.59!2.86!PRRX1;;chr14:73360799..73360817,-!p1@DPF3!0.58!11.43!DPF3;;chr11:47279504..47279563,+!p1@NR1H3!0.58!7.35!NR1H3;;chr7:17338239..17338262,+!p2@AHR!0.57!24.91!AHR;;chr9:2158443..2158481,+!p2@SMARCA2!0.57!8.98!SMARCA2;;chr12:24715376..24715432,-!p1@SOX5!0.57!3.67!SOX5;;chr8:128748308..128748324,+!p2@MYC!0.56!92.07!MYC;;chr5:34929947..34930005,+!p3@DNAJC21!0.56!8.98!DNAJC21;;chr9:102584159..102584174,+!p2@NR4A3!0.56!5.31!NR4A3;;chr7:113726357..113726443,+!p1@FOXP2!0.56!5.10!FOXP2;;chr6:50786591..50786614,+!p1@TFAP2B!0.56!2.65!TFAP2B;;chr3:141121871..141121885,+!p13@ZBTB38!0.56!2.65!ZBTB38;;chr9:96717678..96717689,-!p2@BARX1!0.56!2.65!BARX1;;chr11:65687158..65687216,+!p4@DRAP1!0.55!18.17!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!0.55!3.47!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!0.54!16.13!HIF1A;;chr14:24837368..24837401,+!p1@NFATC4!0.54!6.74!NFATC4;;chr11:46299186..46299195,+!p3@CREB3L1!0.54!2.86!CREB3L1;;chr10:31607811..31607837,+!p6@ZEB1!0.54!2.45!ZEB1;;chr6:1389824..1389840,+!p3@FOXF2!0.54!2.45!FOXF2;;chr8:25902876..25902936,-!p1@EBF2!0.54!2.45!EBF2;;chr1:170633245..170633256,+!p14@PRRX1!0.54!2.45!PRRX1;;chr1:200008734..200008765,+!p2@NR5A2!0.54!2.45!NR5A2;;chr9:77112225..77112238,+!p2@RORB!0.54!2.45!RORB;;chr3:12329339..12329356,+!p5@PPARG!0.54!2.45!PPARG;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.58!SREBF1;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.70!BNC2;;chr11:707063..707088,-!p4@DEAF1!0.53!3.27!DEAF1;;chr9:16870659..16870675,-!p2@BNC2!0.53!3.06!BNC2;;chr10:31608127..31608156,+!p1@ZEB1!0.52!54.92!ZEB1;;chr8:49833948..49833973,-!p2@SNAI2!0.52!18.58!SNAI2;;chr17:59477197..59477212,+!p2@TBX2!0.52!4.49!TBX2;;chr15:37390482..37390572,-!p7@MEIS2!0.52!3.47!MEIS2;;chr8:116681194..116681214,-!p1@TRPS1!0.51!26.95!TRPS1;;chr21:47063625..47063658,+!p1@PCBP3!0.51!12.45!PCBP3;;chr17:41623009..41623053,-!p4@ETV4!0.51!4.08!ETV4;;chr15:67391010..67391046,+!p13@SMAD3!0.51!2.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.51!2.25!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.51!2.25!ETV4;;chr19:13136057..13136085,+!p11@NFIX!0.51!2.25!NFIX;;chr14:37126814..37126834,+!p4@PAX9!0.51!2.25!PAX9;;chr1:158969727..158969749,+!p11@IFI16!0.51!2.25!IFI16;;chr1:44513995..44514031,+!p1@KLF17!0.51!2.25!KLF17;;chr8:49833978..49833996,-!p1@SNAI2!0.50!58.80!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.50!11.64!ZFHX4;;chr20:39946400..39946423,-!p3@ZHX3!0.50!4.70!ZHX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.50!2.86!TFAP2A;;chr6:155635583..155635644,-!p1@TFB1M!0.49!36.14!TFB1M;;chr5:43067636..43067674,+!p6@ZNF131!0.49!3.06!ZNF131;;chr3:114343768..114343822,-!p1@ZBTB20!0.48!11.43!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.48!4.90!ZBTB20;;chr5:178368186..178368238,+!p1@ZNF454!0.48!4.29!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.48!3.88!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.48!2.45!BNC1;;chr19:9609272..9609297,-!p1@ZNF560!0.48!2.0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T10;;chr19:56988677..56988729,-!p1@ZNF667!0.15!1.43!ZNF667;;chr19:47922750..47922795,-!p1@MEIS3!0.15!1.22!MEIS3;;chr21:36260295..36260310,-!p3@RUNX1!0.15!1.22!RUNX1;;chr21:36260343..36260402,-!p6@RUNX1!0.15!1.22!RUNX1;;chr6:1312325..1312340,+!p1@FOXQ1!0.15!1.22!FOXQ1;;chr6:28303901..28303944,-!p2@ZNF323!0.15!1.22!ZNF323;;chr8:60031682..60031710,-!p2@TOX!0.15!1.22!TOX;;chr9:4299979..4299996,-!p3@GLIS3!0.15!1.22!GLIS3;;chr5:178322893..178322931,+!p1@ZFP2!0.15!1.02!ZFP2;;chr6:28234822..28234836,+!p1@ZNF187!0.15!1.02!ZNF187;;chr19:58400344..58400364,-!p2@ZNF814!0.15!1.02!ZNF814;;chr19:12203069..12203094,+!p2@ZNF788!0.15!1.02!ZNF788;;chr4:26322373..26322393,+!p4@RBPJ!0.15!1.02!RBPJ;;chr9:73029018..73029042,-!p6@KLF9!0.15!0.82!KLF9;;chr19:37464063..37464127,+!p2@ZNF568!0.15!0.82!ZNF568;;chr15:35280863..35280908,-!p3@ZNF770!0.15!0.61!ZNF770;;chr2:231084820..231084836,-!p5@SP110!0.15!0.61!SP110;;chr1:164528687..164528711,+!p6@PBX1!0.15!0.61!PBX1;;chr6:10412392..10412409,-!p4@TFAP2A!0.15!0.61!TFAP2A;;chr7:148844498..148844507,+!p6@ZNF398!0.15!0.61!ZNF398;;chr11:47237922..47237964,+!p4@DDB2!0.15!0.61!DDB2;;chr10:131762504..131762555,-!p1@EBF3!0.15!0.41!EBF3;;chr10:31607335..31607354,+!p5@ZEB1!0.15!0.41!ZEB1;;chr11:113930355..113930366,+!p5@ZBTB16!0.15!0.41!ZBTB16;;chr11:113930477..113930488,+!p4@ZBTB16!0.15!0.41!ZBTB16;;chr11:65686689..65686700,+!p14@DRAP1!0.15!0.41!DRAP1;;chr11:8040739..8040815,+!p4@TUB!0.15!0.41!TUB;;chr11:85393886..85393913,-!p3@CREBZF!0.15!0.41!CREBZF;;chr12:10871049..10871064,-!p19@CSDA!0.15!0.41!CSDA;;chr12:24715342..24715354,-!p4@SOX5!0.15!0.41!SOX5;;chr12:51611583..51611612,-!p4@POU6F1!0.15!0.41!POU6F1;;chr12:52448213..52448262,+!p6@NR4A1!0.15!0.41!NR4A1;;chr12:57504069..57504090,-!p7@STAT6!0.15!0.41!STAT6;;chr12:66218037..66218042,+!p18@HMGA2!0.15!0.41!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.15!0.41!HMGA2;;chr12:80085120..80085156,-!p14@PAWR!0.15!0.41!PAWR;;chr13:45150896..45150927,-!p17@TSC22D1!0.15!0.41!TSC22D1;;chr14:45722418..45722426,-!p6@MIS18BP1!0.15!0.41!MIS18BP1;;chr14:45722673..45722691,-!p8@MIS18BP1!0.15!0.41!MIS18BP1;;chr19:53290078..53290089,-!p3@ZNF600!0.15!0.41!ZNF600;;chr19:54024313..54024361,+!p7@ZNF331!0.15!0.41!ZNF331;;chr19:54041467..54041479,+!p13@ZNF331!0.15!0.41!ZNF331;;chr1:114301553..114301576,-!p6@PHTF1!0.15!0.41!PHTF1;;chr1:158985457..158985468,+!p12@IFI16!0.15!0.41!IFI16;;chr1:170631904..170631913,+!p34@PRRX1!0.15!0.41!PRRX1;;chr1:170632583..170632590,+!p26@PRRX1!0.15!0.41!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.15!0.41!HLX;;chr1:221054853..221054873,+!p9@HLX!0.15!0.41!HLX;;chr1:52991347..52991352,-!p5@ZCCHC11!0.15!0.41!ZCCHC11;;chr21:36421401..36421414,-!p16@RUNX1!0.15!0.41!RUNX1;;chr15:57025732..57025743,-!p6@ZNF280D!0.15!0.41!ZNF280D;;chr15:61521495..61521506,-!p5@RORA!0.15!0.41!RORA;;chr15:96869206..96869220,+!p21@NR2F2!0.15!0.41!NR2F2;;chr16:1720809..1720814,+!p6@CRAMP1L!0.15!0.41!CRAMP1L;;chr16:51185573..51185593,-!p3@SALL1!0.15!0.41!SALL1;;chr16:54320302..54320317,-!p10@IRX3!0.15!0.41!IRX3;;chr17:38256590..38256599,-!p8@NR1D1!0.15!0.41!NR1D1;;chr17:42295682..42295731,-!p17@UBTF!0.15!0.41!UBTF;;chr17:7387459..7387470,-!p10@ZBTB4!0.15!0.41!ZBTB4;;chr17:7387486..7387497,-!p11@ZBTB4!0.15!0.41!ZBTB4;;chr18:22932004..22932021,-!p2@ZNF521!0.15!0.41!ZNF521;;chr18:52969813..52969823,-!p67@TCF4!0.15!0.41!TCF4;;chr19:12267492..12267505,-!p2@ZNF625,p3@ZNF20!0.15!0.41!ZNF625;;chr19:12405588..12405595,-!p4@ZNF44!0.15!0.41!ZNF44;;chr19:13106465..13106477,+!p27@NFIX!0.15!0.41!NFIX;;chr19:13135790..13135804,+!p26@NFIX!0.15!0.41!NFIX;;chr19:1611369..1611372,-!p13@TCF3!0.15!0.41!TCF3;;chr19:19976620..19976631,+!p4@ZNF253!0.15!0.41!ZNF253;;chr19:20748614..20748617,-!p5@ZNF737!0.15!0.41!ZNF737;;chr19:31840699..31840720,-!p7@TSHZ3!0.15!0.41!TSHZ3;;chr19:3572758..3572795,+!p7@HMG20B!0.15!0.41!HMG20B;;chr21:43428446..43428452,-!p2@ZNF295!0.15!0.41!ZNF295;;chr21:47063590..47063597,+!p2@PCBP3!0.15!0.41!PCBP3;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.15!0.41!POU3F3;;chr2:169312350..169312362,+!p4@CERS6!0.15!0.41!CERS6;;chr2:172967353..172967365,-!p5@DLX2!0.15!0.41!DLX2;;chr2:191885737..191885750,-!p4@STAT1!0.15!0.41!STAT1;;chr2:191906489..191906517,-!p6@STAT4!0.15!0.41!STAT4;;chr2:28616301..28616302,+!p9@FOSL2!0.15!0.41!FOSL2;;chr2:74730087..74730102,-!p4@LBX2!0.15!0.41!LBX2;;chr2:85981073..85981091,+!p5@ATOH8!0.15!0.41!ATOH8;;chr3:114173720..114173794,-!p6@ZBTB20!0.15!0.41!ZBTB20;;chr3:114790132..114790174,-!p18@ZBTB20!0.15!0.41!ZBTB20;;chr3:114790179..114790213,-!p22@ZBTB20!0.15!0.41!ZBTB20;;chr3:141087454..141087465,+!p19@ZBTB38!0.15!0.41!ZBTB38;;chr3:141121903..141121912,+!p31@ZBTB38!0.15!0.41!ZBTB38;;chr3:157824437..157824459,-!p5@SHOX2!0.15!0.41!SHOX2;;chr3:178789220..178789255,-!p6@ZMAT3!0.15!0.41!ZMAT3;;chr3:18465604..18465618,-!p9@SATB1!0.15!0.41!SATB1;;chr3:185784049..185784050,-!p7@ETV5!0.15!0.41!ETV5;;chr3:21792790..21792824,-!p4@ZNF385D!0.15!0.41!ZNF385D;;chr3:24536332..24536358,-!p2@THRB!0.15!0.41!THRB;;chr3:24536364..24536373,-!p7@THRB!0.15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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=

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FF:11237-116D4: Difference between revisions

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Revision as of 14:56, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0