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{{f5samples
{{f5samples
|id=FF:11697-123A5
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|name=Mesenchymal Stem Cells - bone marrow, donor3
|sample_id=11697
|rna_tube_id=123A5
|rna_box=123
|rna_position=A5
|sample_cell_lot=N/A
|sample_cell_catalog=lot:3654
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC7505
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=bone marrow
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.6
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.36
|sample_note=
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10010,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 33:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:11697-123A5
|is_a=EFO:0002091;;FF:0000002;;FF:0000097;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000097;;FF:0000210
|name=Mesenchymal Stem Cells - bone marrow, donor3
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12126,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10010,,,
|rna_box=123
|rna_catalog_number=SC7505
|rna_concentration=1.36
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A5
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_tube_id=123A5
|rna_weight_ug=10
|sample_age=
|sample_cell_catalog=lot:3654
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=11697
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bone marrow
|top_motifs=GTF2A1,2:1.47009036496;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40157186282;HOX{A5,B5}:1.3246201563;HES1:1.13271695483;GZF1:1.10670746952;GFI1:1.09876734073;RXR{A,B,G}:1.08119249382;NR5A1,2:1.05694896832;ESR1:1.03251932829;RXRA_VDR{dimer}:1.00975409673;NR3C1:0.952693973839;GFI1B:0.888687090371;PPARG:0.852634440137;EN1,2:0.811735815227;PBX1:0.799718679969;IKZF1:0.798888195208;POU2F1..3:0.781396406569;ZBTB6:0.742519264136;PAX8:0.734093463209;ZNF238:0.711246695545;LHX3,4:0.689508337418;EBF1:0.671490387074;ZIC1..3:0.653486433891;ZNF423:0.645710858459;NR1H4:0.644779093797;XCPE1{core}:0.626999910307;TLX1..3_NFIC{dimer}:0.569050687092;TFAP4:0.550374039796;NFY{A,B,C}:0.520001547902;ZNF148:0.508462473345;E2F1..5:0.50136127248;LEF1_TCF7_TCF7L1,2:0.478382337823;SPZ1:0.470451952493;SRF:0.43891701439;TFCP2:0.435071789909;TFAP2{A,C}:0.395666072338;NFE2L1:0.393821118153;GLI1..3:0.392918495423;TOPORS:0.385641862986;ATF6:0.375284396222;TEAD1:0.364156450105;AR:0.357522390951;RREB1:0.346983709186;ZNF143:0.34034421915;BACH2:0.31444283396;KLF4:0.299926653076;ALX4:0.293412053537;UFEwm:0.293175978821;bHLH_family:0.292958585714;SOX17:0.284557452441;SOX{8,9,10}:0.280566181923;YY1:0.273275430057;TFDP1:0.268035803715;POU6F1:0.264783848833;TAL1_TCF{3,4,12}:0.260039570407;PAX5:0.257715399494;TP53:0.251297582209;CDC5L:0.250954689288;STAT5{A,B}:0.240582450603;NFE2L2:0.225380717804;HIC1:0.201150866627;ONECUT1,2:0.197238304219;HNF4A_NR2F1,2:0.194515106299;MZF1:0.189128127501;PDX1:0.157377019728;MTF1:0.155640261948;PAX3,7:0.146802392968;ESRRA:0.144390985022;NANOG:0.143273527127;MYB:0.132985223543;TBP:0.121105098202;TBX4,5:0.119525776059;ARID5B:0.115817608743;REST:0.100063759939;SP1:0.0962476801376;FOS_FOS{B,L1}_JUN{B,D}:0.0936925118437;GTF2I:0.092485956303;HOX{A6,A7,B6,B7}:0.0836719763225;HAND1,2:0.0798093020487;AIRE:0.0472406064835;NFE2:0.0470772254337;HOXA9_MEIS1:0.0209416113561;HNF1A:0.015171816638;FOSL2:-0.000729257561905;RUNX1..3:-0.0108214220758;ELK1,4_GABP{A,B1}:-0.0141962472576;NKX2-3_NKX2-5:-0.0141965716972;TFAP2B:-0.0304864317541;POU5F1:-0.0532971247221;RFX1:-0.0533707966432;FOXL1:-0.0660958013864;NR6A1:-0.0865846668755;HOX{A4,D4}:-0.0991083840505;NKX2-2,8:-0.115623451678;NFIX:-0.117404106873;PRRX1,2:-0.130413893135;EGR1..3:-0.130856892879;NRF1:-0.132967120841;HLF:-0.134434606167;FOXD3:-0.144072779716;MAFB:-0.164320242262;CRX:-0.176251160188;MYBL2:-0.176776099969;POU1F1:-0.183227170096;PAX1,9:-0.199548934877;POU3F1..4:-0.202702648917;STAT2,4,6:-0.218782645832;AHR_ARNT_ARNT2:-0.22164654644;MTE{core}:-0.234902393844;DMAP1_NCOR{1,2}_SMARC:-0.243444008815;MEF2{A,B,C,D}:-0.249431069864;PRDM1:-0.269511037876;PATZ1:-0.2769244617;NHLH1,2:-0.286582587906;NANOG{mouse}:-0.293280532822;HSF1,2:-0.303793667259;NFKB1_REL_RELA:-0.31990688852;XBP1:-0.323036746821;TEF:-0.323839645121;HBP1_HMGB_SSRP1_UBTF:-0.336511388745;OCT4_SOX2{dimer}:-0.340061161089;JUN:-0.358052706926;MED-1{core}:-0.36238404283;NFATC1..3:-0.366110727939;HMX1:-0.374294965889;BREu{core}:-0.391434403631;GATA6:-0.417063749108;CUX2:-0.422112457958;SOX5:-0.423394959728;MAZ:-0.425152013681;ETS1,2:-0.458086096294;FOX{I1,J2}:-0.474558089346;SPIB:-0.478917715657;EVI1:-0.487394742679;ZFP161:-0.495077897812;LMO2:-0.495511288787;SPI1:-0.51095237173;CEBPA,B_DDIT3:-0.512751162925;PAX4:-0.524250747194;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.548428456624;SMAD1..7,9:-0.562622556135;MYOD1:-0.564130624468;ELF1,2,4:-0.58207920792;GATA4:-0.586059047207;SOX2:-0.590608995495;CREB1:-0.594370485372;RFX2..5_RFXANK_RFXAP:-0.606171534148;SNAI1..3:-0.63394630443;NFIL3:-0.644891787577;NKX6-1,2:-0.653803103074;PITX1..3:-0.674558008402;NKX3-1:-0.682598805896;FOXM1:-0.701492791979;T:-0.70297640379;RORA:-0.708211284746;MYFfamily:-0.714813744028;ADNP_IRX_SIX_ZHX:-0.730206029896;VSX1,2:-0.738059676682;FOXA2:-0.785527629654;GCM1,2:-0.826455387851;ZEB1:-0.834005086635;ALX1:-0.837273920814;NKX3-2:-0.849834313293;ATF5_CREB3:-0.864291678885;FOXQ1:-0.872122390963;PAX2:-0.881066203508;ZNF384:-0.90417039246;FOXP3:-0.915583029024;ZBTB16:-0.920749470644;TGIF1:-0.932967060494;ATF2:-0.939017536987;PAX6:-0.949597990205;FOXP1:-0.989754670914;FOX{F1,F2,J1}:-1.01848912514;DBP:-1.03809536984;IRF1,2:-1.03836776701;EP300:-1.04577367661;STAT1,3:-1.04650803446;HIF1A:-1.05465593001;NKX2-1,4:-1.1090779406;SREBF1,2:-1.11857241432;ATF4:-1.12619886271;RBPJ:-1.13715208168;FOX{D1,D2}:-1.15860506634;TLX2:-1.19811215038;FOXO1,3,4:-1.21243257987;CDX1,2,4:-1.29421394513;IRF7:-1.31832138559;HMGA1,2:-1.410798629;BPTF:-1.42899775029;IKZF2:-1.43874904793;FOXN1:-1.46651772449
}}
}}

Revision as of 15:00, 21 March 2012


Name:Mesenchymal Stem Cells - bone marrow, donor3
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.134
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
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C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12126

Jaspar motifP-value
MA0002.20.719
MA0003.10.385
MA0004.10.448
MA0006.10.24
MA0007.10.0102
MA0009.10.155
MA0014.10.827
MA0017.10.213
MA0018.20.0137
MA0019.10.415
MA0024.10.0271
MA0025.10.125
MA0027.10.269
MA0028.10.63
MA0029.10.333
MA0030.10.0044
MA0031.14.53828e-4
MA0035.20.75
MA0038.10.0146
MA0039.20.541
MA0040.10.846
MA0041.10.459
MA0042.10.774
MA0043.18.39802e-5
MA0046.10.105
MA0047.20.29
MA0048.10.0464
MA0050.14.61253e-11
MA0051.11.0638e-7
MA0052.10.363
MA0055.10.00164
MA0057.10.154
MA0058.10.459
MA0059.10.206
MA0060.11.71537e-6
MA0061.10.806
MA0062.20.13
MA0065.20.139
MA0066.10.187
MA0067.10.0233
MA0068.10.759
MA0069.10.283
MA0070.10.03
MA0071.10.192
MA0072.10.753
MA0073.10.938
MA0074.10.145
MA0076.10.657
MA0077.10.363
MA0078.10.57
MA0079.20.692
MA0080.24.30099e-6
MA0081.10.00666
MA0083.10.00289
MA0084.10.972
MA0087.10.567
MA0088.10.0486
MA0090.10.211
MA0091.10.215
MA0092.10.936
MA0093.10.49
MA0099.20.00126
MA0100.10.997
MA0101.10.0776
MA0102.21.83726e-6
MA0103.10.183
MA0104.20.917
MA0105.10.548
MA0106.10.0891
MA0107.10.0665
MA0108.20.00848
MA0111.10.515
MA0112.20.0227
MA0113.10.0985
MA0114.10.237
MA0115.10.815
MA0116.10.225
MA0117.10.168
MA0119.10.352
MA0122.10.836
MA0124.10.765
MA0125.10.944
MA0131.10.634
MA0135.10.0378
MA0136.11.20912e-5
MA0137.20.0331
MA0138.20.124
MA0139.10.686
MA0140.10.94
MA0141.10.0403
MA0142.10.516
MA0143.10.911
MA0144.10.362
MA0145.10.398
MA0146.10.0389
MA0147.10.645
MA0148.10.396
MA0149.10.43
MA0150.10.546
MA0152.10.789
MA0153.10.945
MA0154.10.42
MA0155.10.18
MA0156.10.00258
MA0157.10.0492
MA0159.10.541
MA0160.10.459
MA0162.10.165
MA0163.10.0379
MA0164.10.616
MA0258.10.255
MA0259.10.831



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12126

Novel motifP-value
10.76
100.883
1000.558
1010.0588
1020.608
1030.65
1040.228
1050.539
1060.628
1070.202
1080.877
1090.00678
110.0594
1100.0421
1110.761
1120.782
1130.448
1140.964
1150.298
1160.0342
1170.211
1180.727
1190.66
120.6
1200.167
1210.541
1220.767
1230.00202
1240.251
1250.586
1260.649
1270.453
1280.929
1290.535
130.587
1300.0381
1310.629
1320.217
1330.472
1340.276
1350.544
1360.718
1370.0126
1380.0743
1390.3
140.973
1400.541
1410.209
1420.104
1430.285
1440.764
1450.441
1460.147
1470.266
1480.174
1490.472
150.784
1500.338
1510.705
1520.146
1530.102
1540.372
1550.826
1560.959
1570.632
1580.053
1590.752
160.224
1600.017
1610.524
1620.317
1630.45
1640.677
1650.191
1660.964
1670.447
1680.277
1690.0773
170.336
180.551
190.0514
20.45
200.968
210.72
220.0797
230.876
240.451
250.846
260.0207
270.372
280.0445
290.353
30.48
300.349
310.564
323.92818e-6
330.42
340.303
350.524
360.777
370.158
380.457
390.624
40.581
400.0718
410.318
420.705
430.298
440.991
450.401
460.117
470.187
480.181
490.479
50.361
500.192
510.527
520.563
530.242
540.788
550.765
560.2
570.399
580.351
590.012
60.546
600.836
610.639
620.49
630.237
640.325
650.123
660.0515
670.757
680.0434
690.0475
70.922
700.766
710.165
720.491
730.0263
740.413
750.336
760.483
770.082
780.425
790.253
80.0292
800.461
810.918
820.774
830.394
840.499
850.473
860.909
870.0686
880.415
890.257
90.385
900.091
910.485
920.858
930.888
940.98
950.0457
960.979
970.691
980.391
993.35404e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12126


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)
0000048 (multi fate stem cell)
0000134 (mesenchymal cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
0000548 (animal cell)
0000723 (somatic stem cell)
0002092 (bone marrow cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000061 (anatomical structure)
0000062 (organ)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000479 (tissue)
0000480 (anatomical group)
0000922 (embryo)
0000923 (germ layer)
0000926 (mesoderm)
0001062 (anatomical entity)
0001434 (skeletal system)
0001474 (bone element)
0002050 (embryonic structure)
0002193 (hemolymphoid system)
0002204 (musculoskeletal system)
0002371 (bone marrow)
0002384 (connective tissue)
0002390 (hematopoietic system)
0002405 (immune system)
0002532 (epiblast (generic))
0004120 (mesoderm-derived structure)
0004765 (skeletal element)
0005423 (developing anatomical structure)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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