FF:10444-106F3: Difference between revisions
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.27204833593029e-249!GO:0043226;organelle;2.23702569112966e-202!GO:0043229;intracellular organelle;7.26453828358637e-202!GO:0043231;intracellular membrane-bound organelle;4.22954061140238e-191!GO:0043227;membrane-bound organelle;5.77846766833516e-191!GO:0005737;cytoplasm;3.05331325764815e-184!GO:0044422;organelle part;2.71177358624596e-159!GO:0044446;intracellular organelle part;9.9528287984163e-158!GO:0044444;cytoplasmic part;1.31673486730615e-126!GO:0032991;macromolecular complex;9.74441977410687e-113!GO:0005515;protein binding;7.86824616378359e-86!GO:0030529;ribonucleoprotein complex;1.01025212257197e-85!GO:0005634;nucleus;2.67849344370801e-83!GO:0044428;nuclear part;9.22429098459265e-83!GO:0044238;primary metabolic process;2.72354177030156e-79!GO:0043170;macromolecule metabolic process;4.25546575748045e-79!GO:0044237;cellular metabolic process;6.80154599821022e-79!GO:0003723;RNA binding;1.61187577629502e-72!GO:0043233;organelle lumen;2.50486794165615e-72!GO:0031974;membrane-enclosed lumen;2.50486794165615e-72!GO:0043234;protein complex;3.50316086337841e-60!GO:0016043;cellular component organization and biogenesis;1.64202411538702e-58!GO:0005739;mitochondrion;2.34873761333439e-55!GO:0019538;protein metabolic process;7.69491037807319e-50!GO:0006396;RNA processing;1.86114282595291e-49!GO:0005840;ribosome;1.8778251834113e-48!GO:0043283;biopolymer metabolic process;2.92156817118637e-48!GO:0031090;organelle membrane;7.96356891475637e-48!GO:0031981;nuclear lumen;1.67736557292248e-47!GO:0043228;non-membrane-bound organelle;1.19593984029304e-46!GO:0043232;intracellular non-membrane-bound organelle;1.19593984029304e-46!GO:0033036;macromolecule localization;1.8125330452274e-44!GO:0006412;translation;1.9287511797942e-44!GO:0044260;cellular macromolecule metabolic process;3.03995978584672e-44!GO:0044267;cellular protein metabolic process;5.43980014175564e-44!GO:0015031;protein transport;2.38272508850254e-43!GO:0003735;structural constituent of ribosome;3.09720192233495e-42!GO:0008104;protein localization;1.98397689425739e-40!GO:0016071;mRNA metabolic process;2.13533259501832e-40!GO:0031975;envelope;4.45621746834651e-40!GO:0031967;organelle envelope;4.45621746834651e-40!GO:0045184;establishment of protein localization;1.02956298698861e-39!GO:0006996;organelle organization and biogenesis;1.59626122428223e-39!GO:0006259;DNA metabolic process;3.72225440616843e-39!GO:0046907;intracellular transport;1.75058201238966e-38!GO:0044429;mitochondrial part;7.203464817387e-38!GO:0008380;RNA splicing;7.83842540426876e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.37886886527931e-37!GO:0010467;gene expression;1.14154460469812e-36!GO:0006397;mRNA processing;2.58465550057963e-36!GO:0005829;cytosol;3.8780415900953e-36!GO:0033279;ribosomal subunit;2.86730996720719e-35!GO:0009059;macromolecule biosynthetic process;7.07086880667569e-33!GO:0065003;macromolecular complex assembly;1.61482172993932e-32!GO:0005654;nucleoplasm;1.12402112786311e-31!GO:0009058;biosynthetic process;1.65915554207161e-31!GO:0044249;cellular biosynthetic process;2.13569319952824e-30!GO:0022607;cellular component assembly;2.88627134333298e-29!GO:0000166;nucleotide binding;1.82495491282753e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98165171584589e-28!GO:0006886;intracellular protein transport;2.3032107942568e-28!GO:0007049;cell cycle;3.04167788935195e-28!GO:0005681;spliceosome;1.17555141090622e-26!GO:0051649;establishment of cellular localization;1.03738748330715e-25!GO:0051641;cellular localization;1.17389471774017e-25!GO:0044451;nucleoplasm part;3.58985924625083e-25!GO:0005740;mitochondrial envelope;4.38041661317297e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.48073007995303e-25!GO:0019866;organelle inner membrane;8.38438552684703e-24!GO:0016462;pyrophosphatase activity;8.38438552684703e-24!GO:0017111;nucleoside-triphosphatase activity;8.46886262932354e-24!GO:0031966;mitochondrial membrane;9.94316774331737e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.1351254991183e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.69273066802501e-23!GO:0003676;nucleic acid binding;5.10318279195028e-23!GO:0006974;response to DNA damage stimulus;4.84417879405383e-22!GO:0044445;cytosolic part;8.72321640273601e-22!GO:0006119;oxidative phosphorylation;1.05480307807701e-21!GO:0005743;mitochondrial inner membrane;1.37061246871703e-21!GO:0012505;endomembrane system;3.88729708342369e-21!GO:0032553;ribonucleotide binding;5.38813934356302e-21!GO:0032555;purine ribonucleotide binding;5.38813934356302e-21!GO:0005694;chromosome;4.59640793836444e-20!GO:0000278;mitotic cell cycle;6.19242006914725e-20!GO:0017076;purine nucleotide binding;1.16457831075808e-19!GO:0006281;DNA repair;1.57509208047745e-19!GO:0006512;ubiquitin cycle;1.72028916256394e-19!GO:0022402;cell cycle process;1.97640747894993e-19!GO:0044455;mitochondrial membrane part;3.14589412887064e-19!GO:0015935;small ribosomal subunit;3.91118291739007e-19!GO:0006457;protein folding;2.93756939727969e-18!GO:0022618;protein-RNA complex assembly;3.37135389155697e-18!GO:0044427;chromosomal part;6.3166159892239e-18!GO:0005524;ATP binding;1.22863705598403e-17!GO:0051276;chromosome organization and biogenesis;1.35024335385599e-17!GO:0051301;cell division;1.43599565313511e-17!GO:0000502;proteasome complex (sensu Eukaryota);2.55577654837217e-17!GO:0032559;adenyl ribonucleotide binding;3.15628942666643e-17!GO:0015934;large ribosomal subunit;3.1703768368e-17!GO:0005783;endoplasmic reticulum;6.46747523413531e-17!GO:0048770;pigment granule;6.47362335653278e-17!GO:0042470;melanosome;6.47362335653278e-17!GO:0000087;M phase of mitotic cell cycle;7.9628875197949e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.00009652198977e-16!GO:0006260;DNA replication;1.16009588806747e-16!GO:0044265;cellular macromolecule catabolic process;1.33859572714651e-16!GO:0005794;Golgi apparatus;1.39204598223187e-16!GO:0007067;mitosis;1.50341556264597e-16!GO:0005746;mitochondrial respiratory chain;1.74835655083286e-16!GO:0044257;cellular protein catabolic process;1.95262583551199e-16!GO:0019941;modification-dependent protein catabolic process;2.14037698385849e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.14037698385849e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.3176894718059e-16!GO:0043412;biopolymer modification;2.79276683514096e-16!GO:0005730;nucleolus;2.79276683514096e-16!GO:0043285;biopolymer catabolic process;3.33740805421663e-16!GO:0016874;ligase activity;5.1099188553581e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.99505339300719e-16!GO:0030554;adenyl nucleotide binding;8.0862643924656e-16!GO:0008134;transcription factor binding;9.54975121307743e-16!GO:0005635;nuclear envelope;1.16880338661493e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.18030440377401e-15!GO:0003954;NADH dehydrogenase activity;3.18030440377401e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.18030440377401e-15!GO:0031980;mitochondrial lumen;4.29399383928801e-15!GO:0005759;mitochondrial matrix;4.29399383928801e-15!GO:0016070;RNA metabolic process;4.70127611050393e-15!GO:0048193;Golgi vesicle transport;4.82772004008092e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.30003161093957e-14!GO:0000375;RNA splicing, via transesterification reactions;1.30003161093957e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.30003161093957e-14!GO:0008135;translation factor activity, nucleic acid binding;1.61413183997119e-14!GO:0009057;macromolecule catabolic process;1.79461130071923e-14!GO:0030163;protein catabolic process;1.8473994820322e-14!GO:0022403;cell cycle phase;1.85864310074338e-14!GO:0044432;endoplasmic reticulum part;2.06058624483147e-14!GO:0005761;mitochondrial ribosome;2.30796547994765e-14!GO:0000313;organellar ribosome;2.30796547994765e-14!GO:0006464;protein modification process;2.52164069195125e-14!GO:0015630;microtubule cytoskeleton;2.58317114827864e-14!GO:0016192;vesicle-mediated transport;3.03159433577307e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;3.07300614691684e-14!GO:0009719;response to endogenous stimulus;3.15620514079667e-14!GO:0016887;ATPase activity;5.29012997827753e-14!GO:0031965;nuclear membrane;5.33975717030784e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.44231807654542e-13!GO:0006323;DNA packaging;1.45111469052083e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.63001403012742e-13!GO:0042773;ATP synthesis coupled electron transport;1.63001403012742e-13!GO:0051082;unfolded protein binding;1.71920042286794e-13!GO:0042623;ATPase activity, coupled;1.86948214756668e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.00688822478555e-13!GO:0045271;respiratory chain complex I;2.00688822478555e-13!GO:0005747;mitochondrial respiratory chain complex I;2.00688822478555e-13!GO:0044453;nuclear membrane part;2.87587846687501e-13!GO:0006605;protein targeting;3.61511014486611e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.29557867802245e-13!GO:0016604;nuclear body;5.97846228365868e-13!GO:0000279;M phase;1.54205223500691e-12!GO:0043687;post-translational protein modification;2.74767523585454e-12!GO:0004386;helicase activity;5.09943760732209e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.67271443084726e-12!GO:0044248;cellular catabolic process;1.87592749520326e-11!GO:0051186;cofactor metabolic process;2.20799511680128e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.90213246193123e-11!GO:0042254;ribosome biogenesis and assembly;4.06312535270446e-11!GO:0003743;translation initiation factor activity;4.28845189246891e-11!GO:0003712;transcription cofactor activity;5.74956131690184e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.67455844336749e-11!GO:0006413;translational initiation;8.33041597308047e-11!GO:0006913;nucleocytoplasmic transport;9.91026301319741e-11!GO:0016568;chromatin modification;1.6961012232055e-10!GO:0005643;nuclear pore;1.86202739158304e-10!GO:0016607;nuclear speck;2.32350704561095e-10!GO:0051169;nuclear transport;3.0008848048369e-10!GO:0005789;endoplasmic reticulum membrane;3.36791085412125e-10!GO:0008639;small protein conjugating enzyme activity;3.39030100158919e-10!GO:0006366;transcription from RNA polymerase II promoter;3.74023980862177e-10!GO:0008026;ATP-dependent helicase activity;3.779262884059e-10!GO:0051726;regulation of cell cycle;6.46361770471921e-10!GO:0006403;RNA localization;7.50776914281654e-10!GO:0000074;regulation of progression through cell cycle;7.5846470813581e-10!GO:0050657;nucleic acid transport;7.88715992925803e-10!GO:0051236;establishment of RNA localization;7.88715992925803e-10!GO:0050658;RNA transport;7.88715992925803e-10!GO:0004842;ubiquitin-protein ligase activity;8.12258320193895e-10!GO:0008565;protein transporter activity;9.52936409937861e-10!GO:0000785;chromatin;9.53908905157198e-10!GO:0006461;protein complex assembly;1.35368173530393e-09!GO:0019787;small conjugating protein ligase activity;1.76888774277819e-09!GO:0065002;intracellular protein transport across a membrane;1.97966495313598e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.99531108479292e-09!GO:0006333;chromatin assembly or disassembly;2.67390881672296e-09!GO:0006446;regulation of translational initiation;2.93025066736711e-09!GO:0005819;spindle;3.05157624588235e-09!GO:0006399;tRNA metabolic process;4.04892092734254e-09!GO:0043566;structure-specific DNA binding;4.7960654053955e-09!GO:0006732;coenzyme metabolic process;6.37983567212539e-09!GO:0003697;single-stranded DNA binding;6.89239808917811e-09!GO:0065004;protein-DNA complex assembly;7.37643850371761e-09!GO:0046930;pore complex;1.03341719250187e-08!GO:0005793;ER-Golgi intermediate compartment;1.48642463753529e-08!GO:0012501;programmed cell death;1.71142513167085e-08!GO:0009259;ribonucleotide metabolic process;2.33374085483867e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.6952261057142e-08!GO:0006915;apoptosis;3.06985845874288e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.45003448362768e-08!GO:0000775;chromosome, pericentric region;4.74437523277712e-08!GO:0005813;centrosome;4.86041891020492e-08!GO:0051028;mRNA transport;4.89317846639313e-08!GO:0016881;acid-amino acid ligase activity;5.76226350924768e-08!GO:0005815;microtubule organizing center;6.32634251477477e-08!GO:0006364;rRNA processing;7.48446429867879e-08!GO:0044431;Golgi apparatus part;8.47086826210719e-08!GO:0009055;electron carrier activity;9.42787119146773e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.62897428101049e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.62897428101049e-08!GO:0006163;purine nucleotide metabolic process;9.71625265931225e-08!GO:0015986;ATP synthesis coupled proton transport;9.96637658603008e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.96637658603008e-08!GO:0009150;purine ribonucleotide metabolic process;1.03610379884581e-07!GO:0048523;negative regulation of cellular process;1.18540277136246e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.22064544543222e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.23736853616829e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.23736853616829e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.23736853616829e-07!GO:0016072;rRNA metabolic process;1.32460777025024e-07!GO:0003924;GTPase activity;1.33554910525247e-07!GO:0000245;spliceosome assembly;1.40333240833314e-07!GO:0008219;cell death;1.87993885709375e-07!GO:0016265;death;1.87993885709375e-07!GO:0030120;vesicle coat;1.9739687801987e-07!GO:0030662;coated vesicle membrane;1.9739687801987e-07!GO:0043038;amino acid activation;1.9739687801987e-07!GO:0006418;tRNA aminoacylation for protein translation;1.9739687801987e-07!GO:0043039;tRNA aminoacylation;1.9739687801987e-07!GO:0048475;coated membrane;2.05839138361168e-07!GO:0030117;membrane coat;2.05839138361168e-07!GO:0006261;DNA-dependent DNA replication;2.33538345313806e-07!GO:0019829;cation-transporting ATPase activity;2.40419466383305e-07!GO:0009260;ribonucleotide biosynthetic process;2.66868996335187e-07!GO:0006164;purine nucleotide biosynthetic process;3.13852140243731e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.26471125511136e-07!GO:0005667;transcription factor complex;3.26804828288412e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.73844605229477e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.81741329770074e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.71478917876468e-07!GO:0007051;spindle organization and biogenesis;5.67327601555102e-07!GO:0050794;regulation of cellular process;6.0339215545062e-07!GO:0032446;protein modification by small protein conjugation;6.0339215545062e-07!GO:0009141;nucleoside triphosphate metabolic process;6.0339215545062e-07!GO:0005768;endosome;6.37953313327528e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.585138992536e-07!GO:0009060;aerobic respiration;6.67326030899073e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.68033896196227e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.68033896196227e-07!GO:0017038;protein import;6.68570168307281e-07!GO:0016779;nucleotidyltransferase activity;8.37261806270756e-07!GO:0009142;nucleoside triphosphate biosynthetic process;8.38058245261183e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.38058245261183e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.03610572249049e-06!GO:0007010;cytoskeleton organization and biogenesis;1.04375804219696e-06!GO:0046034;ATP metabolic process;1.06165473864545e-06!GO:0005874;microtubule;1.17588619009687e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.1908126970558e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.1908126970558e-06!GO:0000151;ubiquitin ligase complex;1.29977707588681e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.37231313962945e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.390236314953e-06!GO:0006754;ATP biosynthetic process;1.390236314953e-06!GO:0006753;nucleoside phosphate metabolic process;1.390236314953e-06!GO:0016567;protein ubiquitination;1.55707503599677e-06!GO:0016740;transferase activity;1.84528643430585e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.8687141339913e-06!GO:0006793;phosphorus metabolic process;1.95739754014598e-06!GO:0006796;phosphate metabolic process;1.95739754014598e-06!GO:0045333;cellular respiration;2.02281318613815e-06!GO:0007005;mitochondrion organization and biogenesis;2.1860351327221e-06!GO:0004298;threonine endopeptidase activity;2.18770156240675e-06!GO:0048519;negative regulation of biological process;2.29678293771039e-06!GO:0051188;cofactor biosynthetic process;2.50326692401799e-06!GO:0051246;regulation of protein metabolic process;2.54301466698308e-06!GO:0006099;tricarboxylic acid cycle;2.7944709576567e-06!GO:0046356;acetyl-CoA catabolic process;2.7944709576567e-06!GO:0016563;transcription activator activity;2.89043063095405e-06!GO:0009056;catabolic process;2.91883000222768e-06!GO:0016787;hydrolase activity;2.96741673770349e-06!GO:0031988;membrane-bound vesicle;3.70302698484124e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.45417823732973e-06!GO:0045259;proton-transporting ATP synthase complex;5.18197927004216e-06!GO:0005788;endoplasmic reticulum lumen;5.24292894127198e-06!GO:0005798;Golgi-associated vesicle;5.68539184327528e-06!GO:0031252;leading edge;5.89218934425051e-06!GO:0005525;GTP binding;6.04723102234469e-06!GO:0003713;transcription coactivator activity;7.00327540999753e-06!GO:0003682;chromatin binding;7.9842357288459e-06!GO:0006084;acetyl-CoA metabolic process;8.16686381353983e-06!GO:0031982;vesicle;9.77521210153306e-06!GO:0006613;cotranslational protein targeting to membrane;9.78628477958686e-06!GO:0031497;chromatin assembly;1.05050989291282e-05!GO:0016310;phosphorylation;1.07967260105592e-05!GO:0003724;RNA helicase activity;1.12711981566938e-05!GO:0006334;nucleosome assembly;1.15540451611603e-05!GO:0043623;cellular protein complex assembly;1.15856430426547e-05!GO:0005657;replication fork;1.33529780316322e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.36892588100361e-05!GO:0000139;Golgi membrane;1.37950414813452e-05!GO:0031410;cytoplasmic vesicle;1.44470468369116e-05!GO:0031324;negative regulation of cellular metabolic process;1.45206215848567e-05!GO:0051187;cofactor catabolic process;2.06135471852315e-05!GO:0009117;nucleotide metabolic process;2.2370453786995e-05!GO:0051168;nuclear export;2.69988680657701e-05!GO:0009109;coenzyme catabolic process;3.12190305189901e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.13000708025133e-05!GO:0051329;interphase of mitotic cell cycle;3.31342973553279e-05!GO:0003714;transcription corepressor activity;3.468045883826e-05!GO:0030867;rough endoplasmic reticulum membrane;4.00154987277283e-05!GO:0007017;microtubule-based process;4.21090145411043e-05!GO:0009108;coenzyme biosynthetic process;4.4296164580312e-05!GO:0003684;damaged DNA binding;4.68510131326453e-05!GO:0051170;nuclear import;4.80513312221253e-05!GO:0006752;group transfer coenzyme metabolic process;4.83900307547273e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.19366614190091e-05!GO:0008654;phospholipid biosynthetic process;5.21953568175631e-05!GO:0009892;negative regulation of metabolic process;5.2801404008728e-05!GO:0043067;regulation of programmed cell death;5.54005064599631e-05!GO:0043021;ribonucleoprotein binding;5.67866902558465e-05!GO:0051325;interphase;5.72888864673029e-05!GO:0042981;regulation of apoptosis;5.79044455529864e-05!GO:0006606;protein import into nucleus;6.13038580627792e-05!GO:0005773;vacuole;7.08638851209783e-05!GO:0003690;double-stranded DNA binding;7.08638851209783e-05!GO:0005762;mitochondrial large ribosomal subunit;7.76410710995112e-05!GO:0000315;organellar large ribosomal subunit;7.76410710995112e-05!GO:0000776;kinetochore;7.89576784073318e-05!GO:0050789;regulation of biological process;8.28024087429626e-05!GO:0044440;endosomal part;8.3524406332029e-05!GO:0010008;endosome membrane;8.3524406332029e-05!GO:0051427;hormone receptor binding;8.90556328024434e-05!GO:0003729;mRNA binding;8.95772832348613e-05!GO:0032561;guanyl ribonucleotide binding;9.24566894955925e-05!GO:0019001;guanyl nucleotide binding;9.24566894955925e-05!GO:0051052;regulation of DNA metabolic process;9.58077661217727e-05!GO:0008092;cytoskeletal protein binding;9.86093953234082e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000108536548284944!GO:0006302;double-strand break repair;0.00011138321211675!GO:0016363;nuclear matrix;0.00011929885265095!GO:0016564;transcription repressor activity;0.000127564944708446!GO:0008094;DNA-dependent ATPase activity;0.0001278764941989!GO:0043069;negative regulation of programmed cell death;0.000129341023659867!GO:0005905;coated pit;0.000159629082817044!GO:0019899;enzyme binding;0.000171859051057342!GO:0000314;organellar small ribosomal subunit;0.000172923289472336!GO:0005763;mitochondrial small ribosomal subunit;0.000172923289472336!GO:0035257;nuclear hormone receptor binding;0.000196229154617933!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000205233766444219!GO:0005770;late endosome;0.000207859898854806!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000207859898854806!GO:0033116;ER-Golgi intermediate compartment membrane;0.000210782230809369!GO:0016481;negative regulation of transcription;0.000230769599960743!GO:0003899;DNA-directed RNA polymerase activity;0.000236790886831823!GO:0000075;cell cycle checkpoint;0.000239807735563476!GO:0006612;protein targeting to membrane;0.000251054399440096!GO:0043066;negative regulation of apoptosis;0.000252816939853269!GO:0048471;perinuclear region of cytoplasm;0.000267766365327693!GO:0045786;negative regulation of progression through cell cycle;0.000269177699560017!GO:0008186;RNA-dependent ATPase activity;0.000277630305543082!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000287244093378614!GO:0015399;primary active transmembrane transporter activity;0.000287244093378614!GO:0004674;protein serine/threonine kinase activity;0.00029392212013446!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00030471190710928!GO:0015980;energy derivation by oxidation of organic compounds;0.000384661404863344!GO:0007059;chromosome segregation;0.000387381705859451!GO:0005769;early endosome;0.000404139297838605!GO:0006414;translational elongation;0.000409613199324656!GO:0030176;integral to endoplasmic reticulum membrane;0.00044077797437199!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000508905404742696!GO:0005885;Arp2/3 protein complex;0.000509323985568076!GO:0016197;endosome transport;0.000570196320806045!GO:0007052;mitotic spindle organization and biogenesis;0.000599130484761666!GO:0046474;glycerophospholipid biosynthetic process;0.000628298975272358!GO:0005876;spindle microtubule;0.000639655446069101!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000651996641788739!GO:0016859;cis-trans isomerase activity;0.00065580264677695!GO:0005856;cytoskeleton;0.000659761167937233!GO:0005048;signal sequence binding;0.000692728974924822!GO:0016044;membrane organization and biogenesis;0.000705786049458541!GO:0000323;lytic vacuole;0.00071844962379812!GO:0005764;lysosome;0.00071844962379812!GO:0015631;tubulin binding;0.0007402440324898!GO:0008250;oligosaccharyl transferase complex;0.000742715734186431!GO:0004004;ATP-dependent RNA helicase activity;0.000770794313175775!GO:0006916;anti-apoptosis;0.000791129517925289!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000822767967582182!GO:0030663;COPI coated vesicle membrane;0.000866501206662634!GO:0030126;COPI vesicle coat;0.000866501206662634!GO:0003678;DNA helicase activity;0.000908802592301629!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000938787926367389!GO:0051789;response to protein stimulus;0.000938787926367389!GO:0006986;response to unfolded protein;0.000938787926367389!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000945406664326298!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00100708838503328!GO:0005791;rough endoplasmic reticulum;0.00100708838503328!GO:0004576;oligosaccharyl transferase activity;0.00103047020187386!GO:0006650;glycerophospholipid metabolic process;0.0010746286342111!GO:0006383;transcription from RNA polymerase III promoter;0.00108788736444344!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00114749285563415!GO:0046489;phosphoinositide biosynthetic process;0.00115776032749085!GO:0006352;transcription initiation;0.00131846902701429!GO:0000792;heterochromatin;0.00139241553985749!GO:0008022;protein C-terminus binding;0.00140543491647449!GO:0043284;biopolymer biosynthetic process;0.00146883223037567!GO:0006891;intra-Golgi vesicle-mediated transport;0.00149105411876892!GO:0019843;rRNA binding;0.00151614819346769!GO:0006338;chromatin remodeling;0.00156068504480085!GO:0006310;DNA recombination;0.00156208611325914!GO:0031968;organelle outer membrane;0.0015684460348642!GO:0019867;outer membrane;0.00169588017578535!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00169588017578535!GO:0008361;regulation of cell size;0.00170412925872006!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00179224922791508!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00179224922791508!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00179224922791508!GO:0030137;COPI-coated vesicle;0.00179379587864319!GO:0048500;signal recognition particle;0.00186628062534933!GO:0045454;cell redox homeostasis;0.00191575069255906!GO:0006402;mRNA catabolic process;0.00194688642003006!GO:0007264;small GTPase mediated signal transduction;0.00213996697867863!GO:0044452;nucleolar part;0.00219723580955103!GO:0030384;phosphoinositide metabolic process;0.00221765849020195!GO:0030134;ER to Golgi transport vesicle;0.00223652117177943!GO:0019222;regulation of metabolic process;0.00233015005545343!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00234126058477428!GO:0032508;DNA duplex unwinding;0.00244666955793758!GO:0032392;DNA geometric change;0.00244666955793758!GO:0016049;cell growth;0.00248455560589747!GO:0043492;ATPase activity, coupled to movement of substances;0.0025046468863527!GO:0000059;protein import into nucleus, docking;0.00251011012706614!GO:0005637;nuclear inner membrane;0.00276131050896669!GO:0030127;COPII vesicle coat;0.00294994507160402!GO:0012507;ER to Golgi transport vesicle membrane;0.00294994507160402!GO:0030132;clathrin coat of coated pit;0.00294994507160402!GO:0007006;mitochondrial membrane organization and biogenesis;0.00315426776763264!GO:0006626;protein targeting to mitochondrion;0.00319729755375788!GO:0030658;transport vesicle membrane;0.00327672039080336!GO:0031072;heat shock protein binding;0.00338161219729972!GO:0009165;nucleotide biosynthetic process;0.00341977061912437!GO:0046467;membrane lipid biosynthetic process;0.00341977061912437!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00341977061912437!GO:0006289;nucleotide-excision repair;0.00343759765508311!GO:0015992;proton transport;0.00346579647423711!GO:0043681;protein import into mitochondrion;0.00346579647423711!GO:0006818;hydrogen transport;0.00347900432635466!GO:0007088;regulation of mitosis;0.00347900432635466!GO:0018196;peptidyl-asparagine modification;0.00349865708321418!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00349865708321418!GO:0007243;protein kinase cascade;0.0035107607991187!GO:0031124;mRNA 3'-end processing;0.00355448457173034!GO:0006892;post-Golgi vesicle-mediated transport;0.00380132820210479!GO:0030133;transport vesicle;0.00407298862105073!GO:0008033;tRNA processing;0.00418264489264826!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00420513093874073!GO:0008139;nuclear localization sequence binding;0.00427057388952986!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00427057388952986!GO:0001726;ruffle;0.00433917508391672!GO:0048522;positive regulation of cellular process;0.00433917508391672!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00440174694263736!GO:0006401;RNA catabolic process;0.00440174694263736!GO:0030036;actin cytoskeleton organization and biogenesis;0.00454638711913309!GO:0006284;base-excision repair;0.00469775539436129!GO:0005684;U2-dependent spliceosome;0.00502614522588945!GO:0031901;early endosome membrane;0.00502614522588945!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00505074680053253!GO:0045047;protein targeting to ER;0.00505074680053253!GO:0006839;mitochondrial transport;0.005065777025475!GO:0017166;vinculin binding;0.00516286882024391!GO:0030521;androgen receptor signaling pathway;0.00524351111227278!GO:0006611;protein export from nucleus;0.00525508668502651!GO:0030880;RNA polymerase complex;0.00529380368849196!GO:0043624;cellular protein complex disassembly;0.00529729913151933!GO:0007093;mitotic cell cycle checkpoint;0.00529729913151933!GO:0006268;DNA unwinding during replication;0.00544333703733656!GO:0016584;nucleosome positioning;0.00569939964071954!GO:0001558;regulation of cell growth;0.00596543385053561!GO:0030660;Golgi-associated vesicle membrane;0.00599964192205602!GO:0006405;RNA export from nucleus;0.00606306844591605!GO:0008312;7S RNA binding;0.00618406013844246!GO:0005741;mitochondrial outer membrane;0.00644213911424817!GO:0030027;lamellipodium;0.00659893877281407!GO:0008017;microtubule binding;0.00690471232118512!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00712283975034057!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00717606272946906!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00717606272946906!GO:0051252;regulation of RNA metabolic process;0.00718019669881718!GO:0005096;GTPase activator activity;0.00726476723153749!GO:0045045;secretory pathway;0.00726764902300815!GO:0004527;exonuclease activity;0.00748014219560864!GO:0030118;clathrin coat;0.0076708381861834!GO:0016251;general RNA polymerase II transcription factor activity;0.00806789239707545!GO:0043596;nuclear replication fork;0.00808781477161037!GO:0000922;spindle pole;0.00837565529062087!GO:0005875;microtubule associated complex;0.008422235747634!GO:0048487;beta-tubulin binding;0.00849493553172091!GO:0005869;dynactin complex;0.00856586001457859!GO:0005862;muscle thin filament tropomyosin;0.00873990660466779!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00914154555844639!GO:0003711;transcription elongation regulator activity;0.00914527652997385!GO:0035258;steroid hormone receptor binding;0.00916546158160331!GO:0008168;methyltransferase activity;0.00924595806669497!GO:0016301;kinase activity;0.00926941731754265!GO:0016741;transferase activity, transferring one-carbon groups;0.00950024805771861!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00974798616652913!GO:0008047;enzyme activator activity;0.00974798616652913!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00980090760753328!GO:0000428;DNA-directed RNA polymerase complex;0.00980090760753328!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00999201609489021!GO:0006275;regulation of DNA replication;0.0099955751606161!GO:0007040;lysosome organization and biogenesis;0.0100775124424004!GO:0032984;macromolecular complex disassembly;0.0101824152094339!GO:0016853;isomerase activity;0.0105828160759594!GO:0030032;lamellipodium biogenesis;0.0106919837996438!GO:0008180;signalosome;0.0107317707103114!GO:0000339;RNA cap binding;0.0107789334204669!GO:0003746;translation elongation factor activity;0.0115732355164643!GO:0006497;protein amino acid lipidation;0.0117245275634505!GO:0043022;ribosome binding;0.0118275234835666!GO:0016272;prefoldin complex;0.0119253915017043!GO:0003702;RNA polymerase II transcription factor activity;0.0120804883829481!GO:0000152;nuclear ubiquitin ligase complex;0.0125318067717537!GO:0016491;oxidoreductase activity;0.012771695668814!GO:0005832;chaperonin-containing T-complex;0.0127781486246215!GO:0030119;AP-type membrane coat adaptor complex;0.0127895669175759!GO:0045941;positive regulation of transcription;0.0128313413274827!GO:0051087;chaperone binding;0.0129228286434692!GO:0006506;GPI anchor biosynthetic process;0.0130556667704818!GO:0042393;histone binding;0.01320469716791!GO:0045893;positive regulation of transcription, DNA-dependent;0.0132313943364563!GO:0031123;RNA 3'-end processing;0.0132313943364563!GO:0000786;nucleosome;0.0136267629134064!GO:0000910;cytokinesis;0.0138430361014081!GO:0065009;regulation of a molecular function;0.0141118029243555!GO:0030029;actin filament-based process;0.0145480434719658!GO:0045892;negative regulation of transcription, DNA-dependent;0.0145480434719658!GO:0000228;nuclear chromosome;0.0148536437764144!GO:0033673;negative regulation of kinase activity;0.0148960352012051!GO:0006469;negative regulation of protein kinase activity;0.0148960352012051!GO:0019783;small conjugating protein-specific protease activity;0.0150547846492751!GO:0030659;cytoplasmic vesicle membrane;0.0153571322861904!GO:0008234;cysteine-type peptidase activity;0.0155176717291517!GO:0043241;protein complex disassembly;0.0157718883308596!GO:0006595;polyamine metabolic process;0.015796356397755!GO:0000209;protein polyubiquitination;0.0159453986504843!GO:0051348;negative regulation of transferase activity;0.0167068732429972!GO:0006376;mRNA splice site selection;0.0167068732429972!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0167068732429972!GO:0007265;Ras protein signal transduction;0.0168830067991472!GO:0006505;GPI anchor metabolic process;0.0170759003886063!GO:0008287;protein serine/threonine phosphatase complex;0.0173924374262501!GO:0008276;protein methyltransferase activity;0.0180252610120781!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0186094881577265!GO:0004843;ubiquitin-specific protease activity;0.0186269851094496!GO:0032200;telomere organization and biogenesis;0.0186269851094496!GO:0000723;telomere maintenance;0.0186269851094496!GO:0030131;clathrin adaptor complex;0.0186269851094496!GO:0043488;regulation of mRNA stability;0.0186322517975061!GO:0043487;regulation of RNA stability;0.0186322517975061!GO:0007030;Golgi organization and biogenesis;0.0187283166961892!GO:0006091;generation of precursor metabolites and energy;0.0190157065363858!GO:0006897;endocytosis;0.0196220819022102!GO:0010324;membrane invagination;0.0196220819022102!GO:0016126;sterol biosynthetic process;0.0197332708243254!GO:0022890;inorganic cation transmembrane transporter activity;0.0198142302098404!GO:0040029;regulation of gene expression, epigenetic;0.0200051787868651!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0200051787868651!GO:0015002;heme-copper terminal oxidase activity;0.0200051787868651!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0200051787868651!GO:0004129;cytochrome-c oxidase activity;0.0200051787868651!GO:0031529;ruffle organization and biogenesis;0.0201464532045236!GO:0033559;unsaturated fatty acid metabolic process;0.0201692497652298!GO:0006636;unsaturated fatty acid biosynthetic process;0.0201692497652298!GO:0050681;androgen receptor binding;0.0202301440412111!GO:0006695;cholesterol biosynthetic process;0.0202632648035425!GO:0044433;cytoplasmic vesicle part;0.0203582223884223!GO:0031625;ubiquitin protein ligase binding;0.0204903015572125!GO:0016569;covalent chromatin modification;0.0205261660178684!GO:0006509;membrane protein ectodomain proteolysis;0.0206529676421044!GO:0033619;membrane protein proteolysis;0.0206529676421044!GO:0006672;ceramide metabolic process;0.0206529676421044!GO:0000781;chromosome, telomeric region;0.0207045020174808!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0208390484147708!GO:0010257;NADH dehydrogenase complex assembly;0.0208390484147708!GO:0033108;mitochondrial respiratory chain complex assembly;0.0208390484147708!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0213978471001178!GO:0005938;cell cortex;0.0222519069889429!GO:0030496;midbody;0.0224313900640178!GO:0008629;induction of apoptosis by intracellular signals;0.0224313900640178!GO:0007021;tubulin folding;0.022567710499417!GO:0012506;vesicle membrane;0.022567710499417!GO:0000082;G1/S transition of mitotic cell cycle;0.0240594617389594!GO:0046966;thyroid hormone receptor binding;0.0240594617389594!GO:0051128;regulation of cellular component organization and biogenesis;0.0241233686022444!GO:0000725;recombinational repair;0.0247652698782954!GO:0000724;double-strand break repair via homologous recombination;0.0247652698782954!GO:0004221;ubiquitin thiolesterase activity;0.0247904991062636!GO:0042158;lipoprotein biosynthetic process;0.0248363675092169!GO:0032259;methylation;0.025036585315091!GO:0007033;vacuole organization and biogenesis;0.0250558804268691!GO:0042770;DNA damage response, signal transduction;0.0264634132691001!GO:0043189;H4/H2A histone acetyltransferase complex;0.0268421399942615!GO:0031970;organelle envelope lumen;0.0270254788399942!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0271166474908625!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.027155902183418!GO:0043601;nuclear replisome;0.0272100516304917!GO:0030894;replisome;0.0272100516304917!GO:0000049;tRNA binding;0.0272100516304917!GO:0043130;ubiquitin binding;0.0274483694964689!GO:0032182;small conjugating protein binding;0.0274483694964689!GO:0016311;dephosphorylation;0.0283067421430751!GO:0008538;proteasome activator activity;0.0291518599408378!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0293780546331473!GO:0051287;NAD binding;0.0294436577688516!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0294869285076594!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0296915805274873!GO:0051540;metal cluster binding;0.0298760068590785!GO:0051536;iron-sulfur cluster binding;0.0298760068590785!GO:0008601;protein phosphatase type 2A regulator activity;0.0299700028276984!GO:0044430;cytoskeletal part;0.0301917354602018!GO:0047485;protein N-terminus binding;0.0303859647228051!GO:0043414;biopolymer methylation;0.0306855729006786!GO:0005784;translocon complex;0.0307782539696395!GO:0006740;NADPH regeneration;0.0313447711764421!GO:0006098;pentose-phosphate shunt;0.0313447711764421!GO:0016790;thiolester hydrolase activity;0.031982130983179!GO:0006378;mRNA polyadenylation;0.0323993589978176!GO:0005669;transcription factor TFIID complex;0.0327526211160375!GO:0004003;ATP-dependent DNA helicase activity;0.0347303935839249!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0348182390347114!GO:0051539;4 iron, 4 sulfur cluster binding;0.0352172632421057!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.036168653998044!GO:0009116;nucleoside metabolic process;0.0362351955725843!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0363316985740849!GO:0065007;biological regulation;0.0363316985740849!GO:0031902;late endosome membrane;0.0369475801008663!GO:0031371;ubiquitin conjugating enzyme complex;0.0387561418464213!GO:0004518;nuclease activity;0.0397094340572945!GO:0006301;postreplication repair;0.0397486877274519!GO:0030911;TPR domain binding;0.0402754194177886!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0402754194177886!GO:0007004;telomere maintenance via telomerase;0.0410461512364309!GO:0035267;NuA4 histone acetyltransferase complex;0.0411299766672688!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0411620420933592!GO:0051101;regulation of DNA binding;0.0419543569245748!GO:0016791;phosphoric monoester hydrolase activity;0.0426124829901271!GO:0044450;microtubule organizing center part;0.0426124829901271!GO:0000118;histone deacetylase complex;0.0427113257824082!GO:0030518;steroid hormone receptor signaling pathway;0.0429493527931208!GO:0016407;acetyltransferase activity;0.0429493527931208!GO:0006270;DNA replication initiation;0.0429493527931208!GO:0046519;sphingoid metabolic process;0.0429493527931208!GO:0005680;anaphase-promoting complex;0.0439390758326675!GO:0044454;nuclear chromosome part;0.0441650813654541!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0441650813654541!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0441650813654541!GO:0008610;lipid biosynthetic process;0.0448281539490638!GO:0006458;'de novo' protein folding;0.0453849823004636!GO:0051084;'de novo' posttranslational protein folding;0.0453849823004636!GO:0005586;collagen type III;0.0454065796896192!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455512550697223!GO:0008154;actin polymerization and/or depolymerization;0.0459410762811604!GO:0051920;peroxiredoxin activity;0.0459939839651054!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0460276690775232!GO:0046483;heterocycle metabolic process;0.0465782156854847!GO:0000819;sister chromatid segregation;0.0468594521208401!GO:0006144;purine base metabolic process;0.0469744504551929!GO:0042026;protein refolding;0.0470319759464664!GO:0008536;Ran GTPase binding;0.0477727317288883!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0477757660515758!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0478164455063069!GO:0006360;transcription from RNA polymerase I promoter;0.047958010441042!GO:0006518;peptide metabolic process;0.0484176291572811!GO:0030125;clathrin vesicle coat;0.0484268695097517!GO:0030665;clathrin coated vesicle membrane;0.0484268695097517!GO:0005720;nuclear heterochromatin;0.0487311741502648!GO:0030031;cell projection biogenesis;0.0487311741502648!GO:0000070;mitotic sister chromatid segregation;0.0487311741502648!GO:0003779;actin binding;0.0487634788395341!GO:0000018;regulation of DNA recombination;0.049077379507857 | |||
|sample_id=10444 | |sample_id=10444 | ||
|sample_note= | |sample_note= | ||
Revision as of 18:36, 25 June 2012
| Name: | glioblastoma cell line:A172 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11248
library id: CNhs11185
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11248
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.611 |
| 10 | 10 | 0.277 |
| 100 | 100 | 0.944 |
| 101 | 101 | 0.422 |
| 102 | 102 | 0.484 |
| 103 | 103 | 0.624 |
| 104 | 104 | 0.624 |
| 105 | 105 | 0.771 |
| 106 | 106 | 3.11104e-4 |
| 107 | 107 | 0.38 |
| 108 | 108 | 0.561 |
| 109 | 109 | 0.378 |
| 11 | 11 | 0.321 |
| 110 | 110 | 0.698 |
| 111 | 111 | 0.374 |
| 112 | 112 | 0.0136 |
| 113 | 113 | 0.207 |
| 114 | 114 | 0.209 |
| 115 | 115 | 0.35 |
| 116 | 116 | 0.952 |
| 117 | 117 | 0.929 |
| 118 | 118 | 0.963 |
| 119 | 119 | 0.819 |
| 12 | 12 | 0.274 |
| 120 | 120 | 0.693 |
| 121 | 121 | 0.763 |
| 122 | 122 | 0.809 |
| 123 | 123 | 0.31 |
| 124 | 124 | 0.214 |
| 125 | 125 | 0.96 |
| 126 | 126 | 0.11 |
| 127 | 127 | 0.528 |
| 128 | 128 | 0.00968 |
| 129 | 129 | 0.434 |
| 13 | 13 | 0.0968 |
| 130 | 130 | 0.0775 |
| 131 | 131 | 0.229 |
| 132 | 132 | 0.632 |
| 133 | 133 | 0.402 |
| 134 | 134 | 0.478 |
| 135 | 135 | 0.0744 |
| 136 | 136 | 0.117 |
| 137 | 137 | 0.0176 |
| 138 | 138 | 0.211 |
| 139 | 139 | 0.00206 |
| 14 | 14 | 0.852 |
| 140 | 140 | 0.707 |
| 141 | 141 | 0.549 |
| 142 | 142 | 0.0452 |
| 143 | 143 | 0.445 |
| 144 | 144 | 0.622 |
| 145 | 145 | 0.624 |
| 146 | 146 | 0.671 |
| 147 | 147 | 0.46 |
| 148 | 148 | 0.204 |
| 149 | 149 | 0.257 |
| 15 | 15 | 0.67 |
| 150 | 150 | 0.834 |
| 151 | 151 | 0.534 |
| 152 | 152 | 0.33 |
| 153 | 153 | 0.166 |
| 154 | 154 | 0.456 |
| 155 | 155 | 0.262 |
| 156 | 156 | 0.707 |
| 157 | 157 | 0.757 |
| 158 | 158 | 0.685 |
| 159 | 159 | 0.651 |
| 16 | 16 | 0.172 |
| 160 | 160 | 0.349 |
| 161 | 161 | 0.589 |
| 162 | 162 | 0.892 |
| 163 | 163 | 0.108 |
| 164 | 164 | 0.271 |
| 165 | 165 | 0.55 |
| 166 | 166 | 0.604 |
| 167 | 167 | 0.252 |
| 168 | 168 | 0.552 |
| 169 | 169 | 0.43 |
| 17 | 17 | 0.541 |
| 18 | 18 | 0.353 |
| 19 | 19 | 0.373 |
| 2 | 2 | 0.61 |
| 20 | 20 | 0.827 |
| 21 | 21 | 0.599 |
| 22 | 22 | 0.733 |
| 23 | 23 | 0.37 |
| 24 | 24 | 0.633 |
| 25 | 25 | 0.26 |
| 26 | 26 | 0.442 |
| 27 | 27 | 0.132 |
| 28 | 28 | 0.326 |
| 29 | 29 | 0.331 |
| 3 | 3 | 0.371 |
| 30 | 30 | 0.66 |
| 31 | 31 | 0.962 |
| 32 | 32 | 0.00542 |
| 33 | 33 | 0.448 |
| 34 | 34 | 0.328 |
| 35 | 35 | 0.116 |
| 36 | 36 | 0.0219 |
| 37 | 37 | 0.517 |
| 38 | 38 | 0.593 |
| 39 | 39 | 0.235 |
| 4 | 4 | 0.832 |
| 40 | 40 | 0.128 |
| 41 | 41 | 0.424 |
| 42 | 42 | 0.925 |
| 43 | 43 | 0.109 |
| 44 | 44 | 0.189 |
| 45 | 45 | 0.911 |
| 46 | 46 | 0.239 |
| 47 | 47 | 0.837 |
| 48 | 48 | 0.735 |
| 49 | 49 | 0.0642 |
| 5 | 5 | 0.0718 |
| 50 | 50 | 0.936 |
| 51 | 51 | 0.671 |
| 52 | 52 | 0.107 |
| 53 | 53 | 0.873 |
| 54 | 54 | 0.958 |
| 55 | 55 | 0.798 |
| 56 | 56 | 0.545 |
| 57 | 57 | 0.622 |
| 58 | 58 | 0.0507 |
| 59 | 59 | 0.16 |
| 6 | 6 | 0.229 |
| 60 | 60 | 0.00448 |
| 61 | 61 | 0.806 |
| 62 | 62 | 0.0944 |
| 63 | 63 | 0.229 |
| 64 | 64 | 0.374 |
| 65 | 65 | 0.0847 |
| 66 | 66 | 6.33585e-4 |
| 67 | 67 | 0.807 |
| 68 | 68 | 0.741 |
| 69 | 69 | 0.459 |
| 7 | 7 | 0.0322 |
| 70 | 70 | 0.00331 |
| 71 | 71 | 0.476 |
| 72 | 72 | 0.26 |
| 73 | 73 | 0.314 |
| 74 | 74 | 0.888 |
| 75 | 75 | 0.219 |
| 76 | 76 | 0.0569 |
| 77 | 77 | 0.345 |
| 78 | 78 | 0.466 |
| 79 | 79 | 0.0943 |
| 8 | 8 | 0.799 |
| 80 | 80 | 0.773 |
| 81 | 81 | 0.483 |
| 82 | 82 | 0.381 |
| 83 | 83 | 0.851 |
| 84 | 84 | 0.701 |
| 85 | 85 | 0.00462 |
| 86 | 86 | 0.419 |
| 87 | 87 | 0.711 |
| 88 | 88 | 0.555 |
| 89 | 89 | 0.0335 |
| 9 | 9 | 0.114 |
| 90 | 90 | 0.761 |
| 91 | 91 | 0.0888 |
| 92 | 92 | 0.178 |
| 93 | 93 | 0.754 |
| 94 | 94 | 0.364 |
| 95 | 95 | 0.0995 |
| 96 | 96 | 0.167 |
| 97 | 97 | 0.0954 |
| 98 | 98 | 0.00431 |
| 99 | 99 | 0.583 |
library id: CNhs11185
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.643 |
| 10 | 10 | 0.359 |
| 100 | 100 | 0.99 |
| 101 | 101 | 0.762 |
| 102 | 102 | 0.219 |
| 103 | 103 | 0.439 |
| 104 | 104 | 0.633 |
| 105 | 105 | 0.551 |
| 106 | 106 | 5.4886e-4 |
| 107 | 107 | 0.397 |
| 108 | 108 | 0.557 |
| 109 | 109 | 0.396 |
| 11 | 11 | 0.319 |
| 110 | 110 | 0.666 |
| 111 | 111 | 0.509 |
| 112 | 112 | 0.00791 |
| 113 | 113 | 0.23 |
| 114 | 114 | 0.301 |
| 115 | 115 | 0.396 |
| 116 | 116 | 0.831 |
| 117 | 117 | 0.963 |
| 118 | 118 | 0.657 |
| 119 | 119 | 0.934 |
| 12 | 12 | 0.379 |
| 120 | 120 | 0.578 |
| 121 | 121 | 0.844 |
| 122 | 122 | 0.785 |
| 123 | 123 | 0.862 |
| 124 | 124 | 0.273 |
| 125 | 125 | 0.736 |
| 126 | 126 | 0.0342 |
| 127 | 127 | 0.689 |
| 128 | 128 | 0.00681 |
| 129 | 129 | 0.408 |
| 13 | 13 | 0.0756 |
| 130 | 130 | 0.0755 |
| 131 | 131 | 0.0761 |
| 132 | 132 | 0.479 |
| 133 | 133 | 0.577 |
| 134 | 134 | 0.671 |
| 135 | 135 | 0.122 |
| 136 | 136 | 0.121 |
| 137 | 137 | 0.00945 |
| 138 | 138 | 0.275 |
| 139 | 139 | 0.00813 |
| 14 | 14 | 0.943 |
| 140 | 140 | 0.591 |
| 141 | 141 | 0.603 |
| 142 | 142 | 0.0192 |
| 143 | 143 | 0.329 |
| 144 | 144 | 0.984 |
| 145 | 145 | 0.76 |
| 146 | 146 | 0.753 |
| 147 | 147 | 0.449 |
| 148 | 148 | 0.42 |
| 149 | 149 | 0.37 |
| 15 | 15 | 0.744 |
| 150 | 150 | 0.893 |
| 151 | 151 | 0.629 |
| 152 | 152 | 0.256 |
| 153 | 153 | 0.34 |
| 154 | 154 | 0.585 |
| 155 | 155 | 0.372 |
| 156 | 156 | 0.891 |
| 157 | 157 | 0.885 |
| 158 | 158 | 0.469 |
| 159 | 159 | 0.793 |
| 16 | 16 | 0.284 |
| 160 | 160 | 0.324 |
| 161 | 161 | 0.654 |
| 162 | 162 | 0.866 |
| 163 | 163 | 0.337 |
| 164 | 164 | 0.148 |
| 165 | 165 | 0.556 |
| 166 | 166 | 0.751 |
| 167 | 167 | 0.235 |
| 168 | 168 | 0.751 |
| 169 | 169 | 0.477 |
| 17 | 17 | 0.489 |
| 18 | 18 | 0.481 |
| 19 | 19 | 0.456 |
| 2 | 2 | 0.749 |
| 20 | 20 | 0.946 |
| 21 | 21 | 0.733 |
| 22 | 22 | 0.824 |
| 23 | 23 | 0.355 |
| 24 | 24 | 0.523 |
| 25 | 25 | 0.244 |
| 26 | 26 | 0.396 |
| 27 | 27 | 0.234 |
| 28 | 28 | 0.262 |
| 29 | 29 | 0.21 |
| 3 | 3 | 0.626 |
| 30 | 30 | 0.657 |
| 31 | 31 | 0.904 |
| 32 | 32 | 0.00719 |
| 33 | 33 | 0.395 |
| 34 | 34 | 0.24 |
| 35 | 35 | 0.137 |
| 36 | 36 | 0.0152 |
| 37 | 37 | 0.504 |
| 38 | 38 | 0.843 |
| 39 | 39 | 0.186 |
| 4 | 4 | 0.847 |
| 40 | 40 | 0.0351 |
| 41 | 41 | 0.43 |
| 42 | 42 | 0.756 |
| 43 | 43 | 0.0766 |
| 44 | 44 | 0.0649 |
| 45 | 45 | 0.917 |
| 46 | 46 | 0.241 |
| 47 | 47 | 0.919 |
| 48 | 48 | 0.872 |
| 49 | 49 | 0.0676 |
| 5 | 5 | 0.0484 |
| 50 | 50 | 0.992 |
| 51 | 51 | 0.623 |
| 52 | 52 | 0.0769 |
| 53 | 53 | 0.43 |
| 54 | 54 | 0.798 |
| 55 | 55 | 0.786 |
| 56 | 56 | 0.223 |
| 57 | 57 | 0.476 |
| 58 | 58 | 0.0269 |
| 59 | 59 | 0.15 |
| 6 | 6 | 0.372 |
| 60 | 60 | 0.00246 |
| 61 | 61 | 0.969 |
| 62 | 62 | 0.0783 |
| 63 | 63 | 0.303 |
| 64 | 64 | 0.391 |
| 65 | 65 | 0.121 |
| 66 | 66 | 8.6527e-4 |
| 67 | 67 | 0.934 |
| 68 | 68 | 0.914 |
| 69 | 69 | 0.444 |
| 7 | 7 | 0.0407 |
| 70 | 70 | 0.0296 |
| 71 | 71 | 0.539 |
| 72 | 72 | 0.13 |
| 73 | 73 | 0.199 |
| 74 | 74 | 0.888 |
| 75 | 75 | 0.275 |
| 76 | 76 | 0.0324 |
| 77 | 77 | 0.656 |
| 78 | 78 | 0.515 |
| 79 | 79 | 0.164 |
| 8 | 8 | 0.748 |
| 80 | 80 | 0.915 |
| 81 | 81 | 0.522 |
| 82 | 82 | 0.527 |
| 83 | 83 | 0.875 |
| 84 | 84 | 0.838 |
| 85 | 85 | 0.00404 |
| 86 | 86 | 0.367 |
| 87 | 87 | 0.502 |
| 88 | 88 | 0.736 |
| 89 | 89 | 0.0855 |
| 9 | 9 | 0.0637 |
| 90 | 90 | 0.478 |
| 91 | 91 | 0.0965 |
| 92 | 92 | 0.271 |
| 93 | 93 | 0.555 |
| 94 | 94 | 0.173 |
| 95 | 95 | 0.124 |
| 96 | 96 | 0.118 |
| 97 | 97 | 0.143 |
| 98 | 98 | 0.0123 |
| 99 | 99 | 0.503 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11248
library id: CNhs11185
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
FF:0100016 A-172 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000333 (migratory neural crest cell)
0000055 (non-terminally differentiated cell)
0000548 (animal cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0002319 (neural cell)
0000221 (ectodermal cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000219 (motile cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000125 (glial cell)
0000030 (glioblast)
0000255 (eukaryotic cell)
0000133 (neurectodermal cell)
0000339 (glioblast (sensu Vertebrata))
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0000033 (head)
0000479 (tissue)
0000073 (regional part of nervous system)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0001017 (central nervous system)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0006238 (future brain)
0006601 (presumptive ectoderm)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
