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Coexpression cluster:C61: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!9.54e-28!102;UBERON:0003061!9.54e-28!102;UBERON:0002193!1.27e-26!112;UBERON:0002371!2.65e-19!80;UBERON:0001474!9.48e-17!86;UBERON:0002405!2.21e-15!115;UBERON:0004765!2.67e-12!101;UBERON:0001434!2.67e-12!101;UBERON:0007023!1.06e-10!115;UBERON:0000178!9.54e-07!15;UBERON:0000179!9.54e-07!15;UBERON:0000463!9.54e-07!15
|ontology_enrichment_uberon=UBERON:0002390!9.54e-28!102;UBERON:0003061!9.54e-28!102;UBERON:0002193!1.27e-26!112;UBERON:0002371!2.65e-19!80;UBERON:0001474!9.48e-17!86;UBERON:0002405!2.21e-15!115;UBERON:0004765!2.67e-12!101;UBERON:0001434!2.67e-12!101;UBERON:0007023!1.06e-10!115;UBERON:0000178!9.54e-07!15;UBERON:0000179!9.54e-07!15;UBERON:0000463!9.54e-07!15
|pathway_enrichment=0.000723495633320979;0.02693957269954;4;189;Chemokine signaling pathway (KEGG):04062!1.14932691900024e-06;0.000363761969863575;5;86;Apoptosis (KEGG):04210!0.00198207686361645;0.0482559482565083;3;116;Vascular smooth muscle contraction (KEGG):04270!0.000165140566465295;0.0171610173803105;4;128;Osteoclast differentiation (KEGG):04380!0.00137145006955941;0.0377446910448308;3;102;Toll-like receptor signaling pathway (KEGG):04620!8.56423035042436e-05;0.0135528945295466;4;108;T cell receptor signaling pathway (KEGG):04660!0.000561879558600461;0.025404982899578;3;75;B cell receptor signaling pathway (KEGG):04662!0.000159480877596477;0.0171610173803105;3;49;Intestinal immune network for IgA production (KEGG):04672!0.000191313229292521;0.0171610173803105;4;133;Toxoplasmosis (KEGG):05145!0.00153164363893432;0.0403971009768928;3;106;Amoebiasis (KEGG):05146!0.000628293405730547;0.0265139817218291;4;182;Tuberculosis (KEGG):05152!0.000554077106577416;0.025404982899578;4;176;Influenza A (KEGG):05164!0.000809502563905301;0.0269692169974766;3;85;Small cell lung cancer (KEGG):05222!0.000243995507776927;0.0171610173803105;2;11;Osteopontin Signaling (Wikipathways):WP1434!0.000232815478918128;0.0171610173803105;4;140;Regulation of toll-like receptor signaling pathway (Wikipathways):WP1449!0.000866088111557347;0.02741168873079;3;87;MicroRNAs in cardiomyocyte hypertrophy (Wikipathways):WP1544!2.77565538333288e-05;0.00585663285883237;4;81;Apoptosis Modulation and Signaling (Wikipathways):WP1772!0.000709308355343682;0.02693957269954;4;188;TNF-alpha/NF-kB Signaling Pathway (Wikipathways):WP231!0.00100938566684373;0.0304257679577181;2;22;EBV LMP1 signaling (Wikipathways):WP262!0.000405452167106626;0.0213876018148745;4;162;MAPK signaling pathway (Wikipathways):WP382!0.00137145006955941;0.0377446910448308;3;102;Toll-like receptor signaling pathway (Wikipathways):WP75!0.000771236240077837;0.0269692169974766;6;511;Signaling in Immune system (Reactome):REACT_6900!0.000405452167106626;0.0213876018148745;4;162;TNF alpha/NF-kB down reg. targets (Netpath):NetPath_9!0.00191127452866547;0.0482559482565083;4;246;B Cell Receptor up reg. targets (Netpath):NetPath_12!0.000343004633768695;0.0213876018148745;4;155;IL-1 up reg. targets (Netpath):NetPath_13!2.04164496673815e-08;1.29236126394525e-05;8;217;IL-4 up reg. targets (Netpath):NetPath_16
}}
}}

Revision as of 15:04, 13 July 2012


Full id: C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b



Phase1 CAGE Peaks

Hg19::chr10:103774322..103774339,-p@chr10:103774322..103774339
-
Hg19::chr10:112109413..112109419,-p@chr10:112109413..112109419
-
Hg19::chr10:22556107..22556110,+p1@ENST00000419532
Hg19::chr10:29822094..29822110,-p@chr10:29822094..29822110
-
Hg19::chr10:29822118..29822130,-p@chr10:29822118..29822130
-
Hg19::chr10:61810292..61810302,+p@chr10:61810292..61810302
+
Hg19::chr10:61810305..61810318,+p@chr10:61810305..61810318
+
Hg19::chr10:61810336..61810349,+p@chr10:61810336..61810349
+
Hg19::chr10:76194470..76194496,+p@chr10:76194470..76194496
+
Hg19::chr11:102188272..102188281,+p4@BIRC3
Hg19::chr11:107498447..107498449,+p@chr11:107498447..107498449
+
Hg19::chr11:60712008..60712039,-p@chr11:60712008..60712039
-
Hg19::chr11:60859819..60859836,-p@chr11:60859819..60859836
-
Hg19::chr11:60859886..60859898,-p@chr11:60859886..60859898
-
Hg19::chr11:64365227..64365232,+p@chr11:64365227..64365232
+
Hg19::chr11:64497276..64497282,-p@chr11:64497276..64497282
-
Hg19::chr11:64784128..64784143,+p@chr11:64784128..64784143
+
Hg19::chr11:915207..915220,-p5@CHID1
Hg19::chr11:915274..915282,-p12@CHID1
Hg19::chr11:9225193..9225210,-p@chr11:9225193..9225210
-
Hg19::chr11:9225216..9225230,-p@chr11:9225216..9225230
-
Hg19::chr12:108599751..108599756,+p@chr12:108599751..108599756
+
Hg19::chr12:112513512..112513567,-p@chr12:112513512..112513567
-
Hg19::chr12:112513578..112513587,-p@chr12:112513578..112513587
-
Hg19::chr12:112563335..112563371,+p1@TRAFD1
Hg19::chr12:121951651..121951663,-p@chr12:121951651..121951663
-
Hg19::chr12:121972489..121972509,-p14@KDM2B
Hg19::chr12:121972519..121972545,-p10@KDM2B
Hg19::chr12:121972556..121972571,-p3@KDM2B
Hg19::chr12:131438753..131438771,+p4@GPR133
Hg19::chr12:131543197..131543202,+p@chr12:131543197..131543202
+
Hg19::chr12:56552452..56552476,+p3@MYL6
Hg19::chr12:95211893..95211903,-p@chr12:95211893..95211903
-
Hg19::chr12:95211919..95211930,-p@chr12:95211919..95211930
-
Hg19::chr12:95211935..95211951,-p@chr12:95211935..95211951
-
Hg19::chr12:95258087..95258088,-p@chr12:95258087..95258088
-
Hg19::chr12:95267426..95267478,-p@chr12:95267426..95267478
-
Hg19::chr12:95267640..95267650,-p@chr12:95267640..95267650
-
Hg19::chr13:32672504..32672512,-p@chr13:32672504..32672512
-
Hg19::chr13:46742630..46742701,-p3@LCP1
Hg19::chr13:51381967..51381988,+p3@uc001vey.2
Hg19::chr13:51381989..51382005,+p1@DLEU7-AS1
Hg19::chr13:51382017..51382022,+p3@DLEU7-AS1
Hg19::chr13:51382041..51382048,+p2@DLEU7-AS1
Hg19::chr13:75884283..75884317,-p@chr13:75884283..75884317
-
Hg19::chr13:75884320..75884362,-p@chr13:75884320..75884362
-
Hg19::chr14:23707139..23707159,+p@chr14:23707139..23707159
+
Hg19::chr14:50459798..50459819,-p1@C14orf182
Hg19::chr14:65641128..65641129,-p@chr14:65641128..65641129
-
Hg19::chr14:69199933..69199953,-p@chr14:69199933..69199953
-
Hg19::chr14:69199959..69199970,-p@chr14:69199959..69199970
-
Hg19::chr15:101534994..101535003,+p@chr15:101534994..101535003
+
Hg19::chr15:101535004..101535045,+p@chr15:101535004..101535045
+
Hg19::chr15:44954800..44954825,-p@chr15:44954800..44954825
-
Hg19::chr16:10850527..10850548,+p@chr16:10850527..10850548
+
Hg19::chr16:10868999..10869019,-p5@FAM18A
Hg19::chr16:10869031..10869038,-p12@FAM18A
Hg19::chr16:10870586..10870591,-p@chr16:10870586..10870591
-
Hg19::chr16:10885979..10885991,+p@chr16:10885979..10885991
+
Hg19::chr16:10959804..10959811,+p5@AB463580
Hg19::chr16:10959868..10959879,+p2@AB463580
Hg19::chr16:10959880..10959887,+p6@AB463580
Hg19::chr16:10960091..10960099,+p3@AB463580
Hg19::chr16:10960104..10960115,+p4@AB463580
Hg19::chr16:10989793..10989814,+p@chr16:10989793..10989814
+
Hg19::chr16:14511039..14511043,+p@chr16:14511039..14511043
+
Hg19::chr16:57392687..57392702,+p1@CCL22
Hg19::chr16:57394343..57394366,+p@chr16:57394343..57394366
+
Hg19::chr16:57394384..57394402,+p@chr16:57394384..57394402
+
Hg19::chr16:57394413..57394431,+p@chr16:57394413..57394431
+
Hg19::chr16:57394436..57394449,+p@chr16:57394436..57394449
+
Hg19::chr16:57397411..57397421,+p@chr16:57397411..57397421
+
Hg19::chr16:57397427..57397438,+p@chr16:57397427..57397438
+
Hg19::chr16:57397464..57397474,+p@chr16:57397464..57397474
+
Hg19::chr16:57397519..57397530,+p@chr16:57397519..57397530
+
Hg19::chr16:57397539..57397560,+p@chr16:57397539..57397560
+
Hg19::chr16:57397561..57397572,+p@chr16:57397561..57397572
+
Hg19::chr16:57397581..57397590,+p@chr16:57397581..57397590
+
Hg19::chr16:57397593..57397602,+p@chr16:57397593..57397602
+
Hg19::chr16:57397629..57397640,+p@chr16:57397629..57397640
+
Hg19::chr16:57397653..57397690,+p@chr16:57397653..57397690
+
Hg19::chr16:57397875..57397886,+p@chr16:57397875..57397886
+
Hg19::chr16:57397882..57397931,-p1@CU693343
Hg19::chr16:57397927..57397934,+p@chr16:57397927..57397934
+
Hg19::chr16:57398105..57398126,+p@chr16:57398105..57398126
+
Hg19::chr16:57398263..57398266,+p@chr16:57398263..57398266
+
Hg19::chr16:57398271..57398274,+p@chr16:57398271..57398274
+
Hg19::chr16:57398283..57398306,+p@chr16:57398283..57398306
+
Hg19::chr16:57398441..57398460,+p@chr16:57398441..57398460
+
Hg19::chr16:57399642..57399651,+p@chr16:57399642..57399651
+
Hg19::chr17:1675324..1675347,+p@chr17:1675324..1675347
+
Hg19::chr17:19976626..19976659,+p14@SPECC1
Hg19::chr17:42422929..42422956,+p@chr17:42422929..42422956
+
Hg19::chr17:42422973..42422983,+p@chr17:42422973..42422983
+
Hg19::chr17:42423007..42423019,+p@chr17:42423007..42423019
+
Hg19::chr17:43096311..43096313,+p@chr17:43096311..43096313
+
Hg19::chr17:43299013..43299038,-p3@ENST00000498986
p3@uc002iil.3
Hg19::chr17:43394372..43394435,-p1@MAP3K14
Hg19::chr17:43442243..43442253,-p@chr17:43442243..43442253
-
Hg19::chr17:4643317..4643359,-p15@CXCL16
Hg19::chr17:4689649..4689671,-p1@VMO1
Hg19::chr17:4689735..4689745,-p2@VMO1
Hg19::chr17:4736789..4736810,+p2@MINK1
Hg19::chr17:4736812..4736826,+p4@MINK1
Hg19::chr17:58165660..58165685,-p1@uc002iyl.2
Hg19::chr17:58165691..58165709,-p4@uc002iyl.2
Hg19::chr17:58165717..58165743,-p2@uc002iyl.2
Hg19::chr17:58165788..58165794,-p1@LOC645638
Hg19::chr17:66218994..66219005,+p@chr17:66218994..66219005
+
Hg19::chr17:76133866..76133872,+p23@TMC8
Hg19::chr17:76167616..76167647,+p@chr17:76167616..76167647
+
Hg19::chr17:7791111..7791123,+p@chr17:7791111..7791123
+
Hg19::chr17:7792791..7792802,+p@chr17:7792791..7792802
+
Hg19::chr17:7792820..7792832,+p@chr17:7792820..7792832
+
Hg19::chr18:56247066..56247080,-p23@ALPK2
Hg19::chr18:56247086..56247111,-p24@ALPK2
Hg19::chr18:56320715..56320732,+p@chr18:56320715..56320732
+
Hg19::chr18:56338677..56338687,+p5@MALT1
Hg19::chr19:39687556..39687587,+p2@NCCRP1
Hg19::chr19:39687596..39687612,+p1@NCCRP1
Hg19::chr19:39687865..39687877,+p3@NCCRP1
Hg19::chr19:39691473..39691483,+p@chr19:39691473..39691483
+
Hg19::chr19:39691967..39691971,+p@chr19:39691967..39691971
+
Hg19::chr19:45231520..45231530,-p@chr19:45231520..45231530
-
Hg19::chr19:45231533..45231550,-p@chr19:45231533..45231550
-
Hg19::chr19:45487536..45487571,+p@chr19:45487536..45487571
+
Hg19::chr19:45487573..45487606,+p@chr19:45487573..45487606
+
Hg19::chr19:45487650..45487661,+p@chr19:45487650..45487661
+
Hg19::chr19:45494072..45494085,+p@chr19:45494072..45494085
+
Hg19::chr19:45494089..45494105,+p@chr19:45494089..45494105
+
Hg19::chr1:101610610..101610659,-p@chr1:101610610..101610659
-
Hg19::chr1:101701766..101701778,+p@chr1:101701766..101701778
+
Hg19::chr1:101701781..101701795,+p@chr1:101701781..101701795
+
Hg19::chr1:101701841..101701882,+p8@S1PR1
Hg19::chr1:10555561..10555572,+p@chr1:10555561..10555572
+
Hg19::chr1:10555579..10555591,+p@chr1:10555579..10555591
+
Hg19::chr1:112905828..112905838,+p1@ENST00000454560
Hg19::chr1:151318829..151318851,-p13@RFX5
Hg19::chr1:153650730..153650735,+p20@NPR1
Hg19::chr1:153650755..153650771,+p8@NPR1
Hg19::chr1:154926384..154926395,-p9@PBXIP1
Hg19::chr1:156123108..156123151,+p18@SEMA4A
Hg19::chr1:157105581..157105601,-p@chr1:157105581..157105601
-
Hg19::chr1:157108746..157108762,-p4@ETV3
Hg19::chr1:157108764..157108776,-p7@ETV3
Hg19::chr1:172750924..172750932,+p@chr1:172750924..172750932
+
Hg19::chr1:172751007..172751015,+p@chr1:172751007..172751015
+
Hg19::chr1:172751022..172751037,+p@chr1:172751022..172751037
+
Hg19::chr1:172751066..172751077,+p@chr1:172751066..172751077
+
Hg19::chr1:179921630..179921633,+p@chr1:179921630..179921633
+
Hg19::chr1:201368775..201368784,-p7@LAD1
Hg19::chr1:201369034..201369048,-p5@LAD1
Hg19::chr1:229761379..229761405,-p@chr1:229761379..229761405
-
Hg19::chr1:25194616..25194628,-p@chr1:25194616..25194628
-
Hg19::chr1:25197198..25197207,+p@chr1:25197198..25197207
+
Hg19::chr1:40846881..40846909,+p@chr1:40846881..40846909
+
Hg19::chr1:5433418..5433419,+p@chr1:5433418..5433419
+
Hg19::chr1:6342341..6342360,-p@chr1:6342341..6342360
-
Hg19::chr1:66779048..66779059,-p@chr1:66779048..66779059
-
Hg19::chr1:85462899..85462931,+p@chr1:85462899..85462931
+
Hg19::chr1:8935456..8935467,-p27@ENO1
Hg19::chr1:8935472..8935488,-p20@ENO1
Hg19::chr1:9163159..9163164,-p@chr1:9163159..9163164
-
Hg19::chr1:9189144..9189195,-p1@GPR157
Hg19::chr1:9189245..9189259,-p2@GPR157
Hg19::chr20:20406322..20406332,-p@chr20:20406322..20406332
-
Hg19::chr20:20406346..20406351,-p@chr20:20406346..20406351
-
Hg19::chr20:20418113..20418139,-p@chr20:20418113..20418139
-
Hg19::chr20:22897338..22897344,+p2@uc002wsp.2
Hg19::chr20:4768596..4768628,-p@chr20:4768596..4768628
-
Hg19::chr20:4803330..4803352,-p@chr20:4803330..4803352
-
Hg19::chr21:16090226..16090249,-p@chr21:16090226..16090249
-
Hg19::chr21:35894884..35894895,+p@chr21:35894884..35894895
+
Hg19::chr22:25815778..25815803,+p@chr22:25815778..25815803
+
Hg19::chr22:35807395..35807398,+p13@MCM5
Hg19::chr22:36616659..36616668,+p@chr22:36616659..36616668
+
Hg19::chr22:38609538..38609547,+p8@MAFF
Hg19::chr22:45705979..45705986,+p9@FAM118A
Hg19::chr22:45705987..45706022,+p2@FAM118A
Hg19::chr22:50986685..50986727,+p2@CU679553
Hg19::chr2:101179263..101179284,+p3@PDCL3
Hg19::chr2:101179291..101179310,+p5@PDCL3
Hg19::chr2:101179484..101179502,+p2@PDCL3
Hg19::chr2:102758335..102758346,+p30@IL1R1
Hg19::chr2:102758378..102758401,+p31@IL1R1
Hg19::chr2:158336391..158336415,+p@chr2:158336391..158336415
+
Hg19::chr2:158606314..158606346,-p@chr2:158606314..158606346
-
Hg19::chr2:160761179..160761275,-p1@LY75-CD302
p1@LY75
Hg19::chr2:206587174..206587196,+p17@NRP2
Hg19::chr2:208018487..208018495,-p@chr2:208018487..208018495
-
Hg19::chr2:216986721..216986726,+p29@XRCC5
Hg19::chr2:231790767..231790779,-p@chr2:231790767..231790779
-
Hg19::chr2:231808578..231808581,+p@chr2:231808578..231808581
+
Hg19::chr2:238767219..238767230,+p7@RAMP1
Hg19::chr2:238767237..238767248,+p5@RAMP1
Hg19::chr2:238767346..238767363,+p2@RAMP1
Hg19::chr2:238767388..238767402,+p4@RAMP1
Hg19::chr2:238767517..238767539,+p3@RAMP1
Hg19::chr2:238810193..238810202,+p@chr2:238810193..238810202
+
Hg19::chr2:27434497..27434509,-p19@SLC5A6
Hg19::chr2:45640405..45640412,-p@chr2:45640405..45640412
-
Hg19::chr2:50936065..50936067,+p@chr2:50936065..50936067
+
Hg19::chr2:61081057..61081064,+p@chr2:61081057..61081064
+
Hg19::chr2:65593906..65593917,-p11@SPRED2
Hg19::chr2:71056842..71056868,+p@chr2:71056842..71056868
+
Hg19::chr3:119188696..119188702,+p@chr3:119188696..119188702
+
Hg19::chr3:119188705..119188718,+p@chr3:119188705..119188718
+
Hg19::chr3:119198717..119198735,+p@chr3:119198717..119198735
+
Hg19::chr3:119278515..119278527,-p5@CD80
Hg19::chr3:182871832..182871843,-p@chr3:182871832..182871843
-
Hg19::chr3:182871844..182871855,-p@chr3:182871844..182871855
-
Hg19::chr3:182871897..182871916,-p@chr3:182871897..182871916
-
Hg19::chr3:182871928..182871939,-p@chr3:182871928..182871939
-
Hg19::chr3:182872005..182872022,-p@chr3:182872005..182872022
-
Hg19::chr3:182872047..182872055,-p@chr3:182872047..182872055
-
Hg19::chr3:182872057..182872068,-p@chr3:182872057..182872068
-
Hg19::chr3:182872082..182872093,-p@chr3:182872082..182872093
-
Hg19::chr3:182872116..182872132,-p@chr3:182872116..182872132
-
Hg19::chr3:182872144..182872153,-p@chr3:182872144..182872153
-
Hg19::chr3:182872174..182872187,-p@chr3:182872174..182872187
-
Hg19::chr3:182880514..182880528,-p1@LAMP3
Hg19::chr3:182880541..182880578,-p2@LAMP3
Hg19::chr3:197585687..197585697,+p3@LRCH3
Hg19::chr3:52813932..52813943,+p11@ITIH1
Hg19::chr3:52813951..52813958,+p13@ITIH1
Hg19::chr3:52813997..52814015,+p9@ITIH1
Hg19::chr3:98989626..98989627,+p@chr3:98989626..98989627
+
Hg19::chr4:103478257..103478273,+p28@NFKB1
Hg19::chr4:119947900..119947917,+p9@SYNPO2
Hg19::chr4:119947953..119947968,+p20@SYNPO2
Hg19::chr4:14845952..14845956,-p@chr4:14845952..14845956
-
Hg19::chr4:160141656..160141659,+p@chr4:160141656..160141659
+
Hg19::chr4:78079509..78079563,+p3@CCNG2
Hg19::chr4:78079570..78079586,+p7@CCNG2
Hg19::chr4:78079649..78079662,+p19@CCNG2
Hg19::chr4:83563607..83563621,-p@chr4:83563607..83563621
-
Hg19::chr4:83602084..83602095,-p23@SCD5
Hg19::chr5:75858160..75858165,+p@chr5:75858160..75858165
+
Hg19::chr6:106340773..106340776,-p@chr6:106340773..106340776
-
Hg19::chr6:106340792..106340805,-p@chr6:106340792..106340805
-
Hg19::chr6:106340812..106340852,-p@chr6:106340812..106340852
-
Hg19::chr6:106340857..106340862,-p@chr6:106340857..106340862
-
Hg19::chr6:20723063..20723072,+p@chr6:20723063..20723072
+
Hg19::chr6:26383377..26383395,+p3@BTN2A2
Hg19::chr6:32605173..32605190,+p1@HLA-DQA1
Hg19::chr6:32609190..32609204,+p18@HLA-DQA1
Hg19::chr6:32610515..32610535,+p16@HLA-DQA1
Hg19::chr6:32610814..32610817,+p28@HLA-DQA1
Hg19::chr6:32610846..32610863,+p5@HLA-DQA1
Hg19::chr6:33055198..33055203,+p@chr6:33055198..33055203
+
Hg19::chr6:33107633..33107670,-p@chr6:33107633..33107670
-
Hg19::chr6:41123284..41123294,-p@chr6:41123284..41123294
-
Hg19::chr6:6862008..6862024,-p@chr6:6862008..6862024
-
Hg19::chr7:106505959..106505980,+p4@PIK3CG
Hg19::chr7:106505988..106506018,+p6@PIK3CG
Hg19::chr7:106888874..106888913,-p@chr7:106888874..106888913
-
Hg19::chr7:106889102..106889113,-p@chr7:106889102..106889113
-
Hg19::chr7:111700086..111700089,-p@chr7:111700086..111700089
-
Hg19::chr7:150066722..150066738,+p10@REPIN1
Hg19::chr7:150070749..150070799,+p@chr7:150070749..150070799
+
Hg19::chr7:150102756..150102772,+p5@ZNF775
Hg19::chr7:150479143..150479154,-p@chr7:150479143..150479154
-
Hg19::chr7:150497625..150497646,-p10@TMEM176B
Hg19::chr7:150498814..150498826,-p8@TMEM176B
Hg19::chr7:150498868..150498890,+p11@TMEM176A
Hg19::chr7:150520561..150520563,+p@chr7:150520561..150520563
+
Hg19::chr7:151038850..151038915,+p1@NUB1
Hg19::chr7:22761970..22762002,-p@chr7:22761970..22762002
-
Hg19::chr7:22762017..22762024,-p@chr7:22762017..22762024
-
Hg19::chr7:30619042..30619046,-p@chr7:30619042..30619046
-
Hg19::chr7:6427818..6427822,+p@chr7:6427818..6427822
+
Hg19::chr7:6431430..6431437,+p@chr7:6431430..6431437
+
Hg19::chr8:39771370..39771382,+p2@IDO1
Hg19::chr8:39771400..39771420,+p1@IDO1
Hg19::chr8:39818857..39818873,+p@chr8:39818857..39818873
+
Hg19::chr9:102587069..102587091,+p@chr9:102587069..102587091
+
Hg19::chr9:113018779..113018796,-p1@TXN
Hg19::chr9:135665233..135665245,-p@chr9:135665233..135665245
-
Hg19::chr9:140056300..140056307,+p@chr9:140056300..140056307
+
Hg19::chr9:35227706..35227717,+p5@UNC13B
Hg19::chr9:35227753..35227762,+p6@UNC13B
Hg19::chrX:108780205..108780217,+p6@NXT2
Hg19::chrX:13707235..13707286,+p1@RAB9A
Hg19::chrX:13707290..13707304,+p2@RAB9A
Hg19::chrX:66877253..66877260,-p@chrX:66877253..66877260
-
Hg19::chrX:78200913..78200947,+p2@P2RY10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.0007234956333209790.026939572699544189Chemokine signaling pathway (KEGG):04062
1.14932691900024e-060.000363761969863575586Apoptosis (KEGG):04210
0.001982076863616450.04825594825650833116Vascular smooth muscle contraction (KEGG):04270
0.0001651405664652950.01716101738031054128Osteoclast differentiation (KEGG):04380
0.001371450069559410.03774469104483083102Toll-like receptor signaling pathway (KEGG):04620
8.56423035042436e-050.01355289452954664108T cell receptor signaling pathway (KEGG):04660
0.0005618795586004610.025404982899578375B cell receptor signaling pathway (KEGG):04662
0.0001594808775964770.0171610173803105349Intestinal immune network for IgA production (KEGG):04672
0.0001913132292925210.01716101738031054133Toxoplasmosis (KEGG):05145
0.001531643638934320.04039710097689283106Amoebiasis (KEGG):05146
0.0006282934057305470.02651398172182914182Tuberculosis (KEGG):05152
0.0005540771065774160.0254049828995784176Influenza A (KEGG):05164
0.0008095025639053010.0269692169974766385Small cell lung cancer (KEGG):05222
0.0002439955077769270.0171610173803105211Osteopontin Signaling (Wikipathways):WP1434
0.0002328154789181280.01716101738031054140Regulation of toll-like receptor signaling pathway (Wikipathways):WP1449
0.0008660881115573470.02741168873079387MicroRNAs in cardiomyocyte hypertrophy (Wikipathways):WP1544
2.77565538333288e-050.00585663285883237481Apoptosis Modulation and Signaling (Wikipathways):WP1772
0.0007093083553436820.026939572699544188TNF-alpha/NF-kB Signaling Pathway (Wikipathways):WP231
0.001009385666843730.0304257679577181222EBV LMP1 signaling (Wikipathways):WP262
0.0004054521671066260.02138760181487454162MAPK signaling pathway (Wikipathways):WP382
0.001371450069559410.03774469104483083102Toll-like receptor signaling pathway (Wikipathways):WP75
0.0007712362400778370.02696921699747666511Signaling in Immune system (Reactome):REACT_6900
0.0004054521671066260.02138760181487454162TNF alpha/NF-kB down reg. targets (Netpath):NetPath_9
0.001911274528665470.04825594825650834246B Cell Receptor up reg. targets (Netpath):NetPath_12
0.0003430046337686950.02138760181487454155IL-1 up reg. targets (Netpath):NetPath_13
2.04164496673815e-081.29236126394525e-058217IL-4 up reg. targets (Netpath):NetPath_16



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0032502developmental process0.000377841516044536
GO:0048869cellular developmental process0.00628566792223742
GO:0030154cell differentiation0.00628566792223742
GO:0005886plasma membrane0.0494507038038988
GO:0043066negative regulation of apoptosis0.0494507038038988
GO:0032623interleukin-2 production0.0494507038038988
GO:0043069negative regulation of programmed cell death0.0494507038038988
GO:0044464cell part0.0494507038038988



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte5.89e-46140
nongranular leukocyte2.48e-36119
hematopoietic lineage restricted progenitor cell1.09e-35124
myeloid leukocyte4.12e-2776
hematopoietic stem cell1.17e-24172
angioblastic mesenchymal cell1.17e-24172
granulocyte monocyte progenitor cell9.60e-2471
hematopoietic cell3.26e-23182
hematopoietic oligopotent progenitor cell3.90e-23165
hematopoietic multipotent progenitor cell3.90e-23165
macrophage dendritic cell progenitor3.99e-2365
monopoietic cell7.76e-2263
monocyte7.76e-2263
monoblast7.76e-2263
promonocyte7.76e-2263
myeloid lineage restricted progenitor cell1.87e-2170
CD14-positive, CD16-negative classical monocyte5.56e-2142
classical monocyte2.19e-1945
lymphocyte4.55e-1353
common lymphoid progenitor4.55e-1353
lymphoid lineage restricted progenitor cell1.31e-1252
myeloid cell6.37e-11112
common myeloid progenitor6.37e-11112
lymphocyte of B lineage2.19e-0924
pro-B cell2.19e-0924
dendritic cell2.30e-0810
conventional dendritic cell2.03e-078
Uber Anatomy
Ontology termp-valuen
hematopoietic system9.54e-28102
blood island9.54e-28102
hemolymphoid system1.27e-26112
bone marrow2.65e-1980
bone element9.48e-1786
immune system2.21e-15115
skeletal element2.67e-12101
skeletal system2.67e-12101
adult organism1.06e-10115
blood9.54e-0715
haemolymphatic fluid9.54e-0715
organism substance9.54e-0715


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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