Coexpression cluster:C274

Full id: C274_CD14_Mast_immature_Basophils_mature_vagina_Hepatocyte

Phase1 CAGE Peaks

Hg19::chr10:134775979..134775984,+	p@chr10:134775979..134775984 +
Hg19::chr11:63298876..63298880,-	p@chr11:63298876..63298880 -
Hg19::chr11:65951241..65951245,-	p@chr11:65951241..65951245 -
Hg19::chr12:104356528..104356534,+	p@chr12:104356528..104356534 +
Hg19::chr12:1704684..1704694,+	p@chr12:1704684..1704694 +
Hg19::chr12:31890320..31890327,-	p@chr12:31890320..31890327 -
Hg19::chr12:52427143..52427164,+	p@chr12:52427143..52427164 +
Hg19::chr12:7009390..7009406,+	p@chr12:7009390..7009406 +
Hg19::chr13:31736341..31736352,+	p@chr13:31736341..31736352 +
Hg19::chr13:75902777..75902790,-	p@chr13:75902777..75902790 -
Hg19::chr14:65634137..65634143,+	p@chr14:65634137..65634143 +
Hg19::chr14:93799634..93799654,-	p5@BTBD7
Hg19::chr15:42787452..42787465,+	p3@SNAP23
Hg19::chr16:31398258..31398263,+	p@chr16:31398258..31398263 +
Hg19::chr17:72267455..72267461,-	p@chr17:72267455..72267461 -
Hg19::chr18:77905923..77905938,+	p1@LOC100130522
Hg19::chr19:2678248..2678258,-	p@chr19:2678248..2678258 -
Hg19::chr19:54828407..54828412,+	p@chr19:54828407..54828412 +
Hg19::chr19:7643171..7643177,-	p@chr19:7643171..7643177 -
Hg19::chr19:9906796..9906801,-	p@chr19:9906796..9906801 -
Hg19::chr1:12207060..12207069,+	p@chr1:12207060..12207069 +
Hg19::chr1:173183104..173183105,+	p@chr1:173183104..173183105 +
Hg19::chr1:212661739..212661745,-	p@chr1:212661739..212661745 -
Hg19::chr20:17891803..17891806,+	p@chr20:17891803..17891806 +
Hg19::chr20:2189294..2189298,+	p@chr20:2189294..2189298 +
Hg19::chr20:47526947..47526954,-	p@chr20:47526947..47526954 -
Hg19::chr20:49087009..49087016,-	p@chr20:49087009..49087016 -
Hg19::chr21:45626767..45626771,+	p@chr21:45626767..45626771 +
Hg19::chr22:25403779..25403785,+	p@chr22:25403779..25403785 +
Hg19::chr2:242786344..242786355,+	p5@ENST00000442867
Hg19::chr2:97232612..97232618,+	p@chr2:97232612..97232618 +
Hg19::chr3:13493495..13493517,+	p@chr3:13493495..13493517 +
Hg19::chr3:171812201..171812209,+	p@chr3:171812201..171812209 +
Hg19::chr5:142147544..142147559,-	p@chr5:142147544..142147559 -
Hg19::chr5:157026809..157026848,+	p@chr5:157026809..157026848 +
Hg19::chr5:172199724..172199762,+	p@chr5:172199724..172199762 +
Hg19::chr6:28222032..28222038,-	p@chr6:28222032..28222038 -
Hg19::chr6:30755729..30755743,-	p@chr6:30755729..30755743 -
Hg19::chr7:102336834..102336841,+	p@chr7:102336834..102336841 +
Hg19::chr7:148224682..148224688,-	p@chr7:148224682..148224688 -
Hg19::chr7:22867497..22867502,+	p@chr7:22867497..22867502 +
Hg19::chr7:76803755..76803761,-	p@chr7:76803755..76803761 -
Hg19::chr8:72754636..72754663,-	p@chr8:72754636..72754663 -
Hg19::chr8:72754885..72754889,+	p2@LOC100132891
Hg19::chr9:134516035..134516082,+	p@chr9:134516035..134516082 +
Hg19::chr9:34986960..34986973,+	p@chr9:34986960..34986973 +
Hg19::chrX:1441548..1441556,+	p@chrX:1441548..1441556 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0006903	vesicle targeting	0.00871164714386449
GO:0051650	establishment of vesicle localization	0.00871164714386449
GO:0051648	vesicle localization	0.00871164714386449
GO:0006892	post-Golgi vesicle-mediated transport	0.0100167719467249
GO:0051656	establishment of organelle localization	0.0100167719467249
GO:0051640	organelle localization	0.0100691349978272
GO:0019717	synaptosome	0.0100691349978272
GO:0006944	membrane fusion	0.0100691349978272
GO:0048193	Golgi vesicle transport	0.0215127152599617

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

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Cell Type

Ontology term	p-value	n
classical monocyte	1.54e-111	42
CD14-positive, CD16-negative classical monocyte	1.54e-111	42
defensive cell	8.46e-97	48
phagocyte	8.46e-97	48
monopoietic cell	3.71e-76	59
monocyte	3.71e-76	59
monoblast	3.71e-76	59
promonocyte	3.71e-76	59
myeloid leukocyte	1.85e-74	72
macrophage dendritic cell progenitor	1.71e-73	61
myeloid lineage restricted progenitor cell	4.49e-72	66
granulocyte monocyte progenitor cell	6.44e-71	67
stuff accumulating cell	1.63e-50	87
myeloid cell	1.23e-47	108
common myeloid progenitor	1.23e-47	108
hematopoietic lineage restricted progenitor cell	3.53e-42	120
nongranular leukocyte	1.62e-41	115
leukocyte	2.02e-41	136
hematopoietic oligopotent progenitor cell	5.98e-34	161
hematopoietic multipotent progenitor cell	5.98e-34	161
hematopoietic stem cell	2.98e-32	168
angioblastic mesenchymal cell	2.98e-32	168
hematopoietic cell	2.89e-30	177
mesenchymal cell	1.34e-11	354
connective tissue cell	3.11e-11	361
motile cell	6.02e-10	386
multi fate stem cell	2.27e-08	427
somatic stem cell	3.75e-08	433
stem cell	7.16e-08	441
basophil	1.99e-07	3

Uber Anatomy

Ontology term	p-value	n
bone marrow	7.32e-62	76
bone element	6.49e-57	82
immune system	3.58e-56	93
hematopoietic system	5.40e-53	98
blood island	5.40e-53	98
skeletal element	2.49e-51	90
hemolymphoid system	1.65e-47	108
skeletal system	1.36e-45	100
musculoskeletal system	9.54e-25	167
lateral plate mesoderm	3.52e-22	203
mesoderm	7.74e-12	315
mesoderm-derived structure	7.74e-12	315
presumptive mesoderm	7.74e-12	315
connective tissue	9.79e-11	371

Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}

ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

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(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF	#promoters	Enrichment	p-value	q-value
HSF1#3297	6	20.9732765957447	4.35525014925938e-07	2.08554777780147e-05
PPARGC1A#10891	4	29.791586073501	1.06543821898128e-05	0.000276524110716169

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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