FFCP PHASE1:Hg19::chr10:26505329..26505346,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2572|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4093|TSSclassifier=S|UniProt=Q05329,Q5VZ30|association_with_transcript=93bp_to_ENST00000376261,NM_000818,NM_001134366,uc001isp.2,uc001isq.2,uc009xkr.2_5end|coexpression_cluster_id=C3010|description=CAGE_peak_6_at_GAD2_5end|id=chr10:26505329..26505346,+|ontology_enrichment_celltype=CL:0002322!4.30e-12!5|ontology_enrichment_celltype_v019=CL:0000540;1.35e-07;6!CL:0000404;1.35e-07;6|ontology_enrichment_celltype_v019_2=CL:0000047,1.66e-09,8;CL:0000540,1.29e-07,6;CL:0000031,1.29e-07,6;CL:0000404,1.29e-07,6|ontology_enrichment_development_v019=UBERON:0006601;2.69e-12;82!UBERON:0010122;1.11e-10;2!CL:0000031;1.35e-07;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!9.21e-84!57;UBERON:0005068!9.21e-84!57;UBERON:0006241!9.21e-84!57;UBERON:0007135!9.21e-84!57;UBERON:0001017!4.90e-75!82;UBERON:0005743!5.83e-71!86;UBERON:0002616!1.21e-69!59;UBERON:0001869!1.30e-65!32;UBERON:0001893!2.08e-65!34;UBERON:0002020!2.12e-65!34;UBERON:0003528!2.12e-65!34;UBERON:0002780!5.24e-65!41;UBERON:0001890!5.24e-65!41;UBERON:0006240!5.24e-65!41;UBERON:0003080!2.97e-63!42;UBERON:0002791!4.21e-63!33;UBERON:0000955!4.23e-63!69;UBERON:0006238!4.23e-63!69;UBERON:0000073!5.07e-63!94;UBERON:0001016!5.07e-63!94;UBERON:0003075!9.14e-62!86;UBERON:0007284!9.14e-62!86;UBERON:0002346!1.94e-58!90;UBERON:0002619!2.83e-55!22;UBERON:0001950!1.12e-50!20;UBERON:0003056!1.54e-48!61;UBERON:0000956!4.33e-48!25;UBERON:0000203!4.33e-48!25;UBERON:0000033!4.25e-37!123;UBERON:0007023!6.04e-37!115;UBERON:0004121!7.17e-35!169;UBERON:0000153!8.79e-35!129;UBERON:0007811!8.79e-35!129;UBERON:0000924!9.75e-34!173;UBERON:0006601!9.75e-34!173;UBERON:0003076!1.58e-20!15;UBERON:0003057!1.58e-20!15;UBERON:0001871!5.27e-20!7;UBERON:0002420!1.53e-18!9;UBERON:0007245!1.53e-18!9;UBERON:0010009!1.53e-18!9;UBERON:0010011!1.53e-18!9;UBERON:0000454!1.53e-18!9;UBERON:0002308!2.48e-18!9;UBERON:0000125!2.48e-18!9;UBERON:0000025!7.11e-18!194;UBERON:0000200!2.79e-15!6;UBERON:0004733!1.61e-14!12;UBERON:0002028!1.61e-14!12;UBERON:0007277!1.61e-14!12;UBERON:0009663!3.20e-14!7;UBERON:0001872!1.54e-13!5;UBERON:0004732!2.87e-13!13;UBERON:0002021!3.15e-13!5;UBERON:0000349!5.11e-13!5;UBERON:0000369!4.51e-12!4;UBERON:0002435!4.51e-12!4;UBERON:0000204!4.51e-12!4;UBERON:0010082!4.51e-12!4;UBERON:0004111!4.99e-12!241;UBERON:0000064!8.41e-12!219;UBERON:0000483!2.05e-10!309;UBERON:0000119!3.42e-10!312;UBERON:0000477!3.44e-10!286;UBERON:0002298!6.02e-10!8;UBERON:0005383!1.40e-09!3;UBERON:0005382!1.40e-09!3;UBERON:0002680!3.47e-09!9;UBERON:0001895!3.47e-09!9;UBERON:0010092!3.47e-09!9;UBERON:0002771!3.09e-08!3;UBERON:0002240!4.17e-08!3;UBERON:0000922!4.32e-08!612;UBERON:0000475!6.48e-08!365;UBERON:0000988!1.19e-07!3;UBERON:0001896!1.70e-07!3;UBERON:0005290!1.70e-07!3;UBERON:0010096!1.70e-07!3;UBERON:0000473!2.49e-07!8;UBERON:0001873!6.27e-07!2;UBERON:0010122!6.27e-07!2;UBERON:0000062!6.43e-07!511|ontology_enrichment_uberon_v019=UBERON:0001869;8.65e-79;32!UBERON:0002791;1.28e-73;32!UBERON:0001893;4.03e-70;34!UBERON:0003528;1.23e-64;34!UBERON:0002020;1.23e-64;34!UBERON:0002619;3.63e-64;22!UBERON:0001950;2.97e-63;20!UBERON:0002780;7.25e-60;41!UBERON:0001890;7.25e-60;41!UBERON:0000956;3.08e-56;25!UBERON:0000203;3.08e-56;25!UBERON:0000073;2.43e-34;53!UBERON:0002616;2.43e-34;53!UBERON:0001017;4.58e-30;75!UBERON:0000955;7.33e-27;68!UBERON:0001016;7.89e-27;83!UBERON:0002420;4.07e-24;9!UBERON:0007245;4.07e-24;9!UBERON:0010009;4.07e-24;9!UBERON:0010011;4.07e-24;9!UBERON:0000454;4.07e-24;9!UBERON:0009663;1.81e-23;7!UBERON:0001872;9.72e-22;5!UBERON:0000369;2.31e-19;4!UBERON:0002435;2.31e-19;4!UBERON:0000204;2.31e-19;4!UBERON:0000125;4.10e-18;9!UBERON:0002308;4.10e-18;9!UBERON:0000200;7.82e-18;6!UBERON:0001871;7.95e-16;6!UBERON:0005383;3.86e-15;3!UBERON:0005382;3.86e-15;3!UBERON:0002021;2.15e-14;5!UBERON:0001870;1.35e-13;3!UBERON:0001873;1.11e-10;2!UBERON:0011216;5.02e-10;132!UBERON:0001875;7.03e-10;2!UBERON:0006514;7.03e-10;2!UBERON:0001897;8.97e-10;2!UBERON:0002702;8.97e-10;2!UBERON:0010225;8.97e-10;2!UBERON:0007023;1.07e-08;114!UBERON:0000349;1.77e-08;5!UBERON:0010314;2.03e-07;132|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.60e-84,32;UBERON:0002780,4.31e-82,41;UBERON:0001890,4.31e-82,41;UBERON:0003080,4.31e-82,41;UBERON:0006240,4.31e-82,41;UBERON:0001893,2.45e-79,34;UBERON:0002791,4.25e-78,32;UBERON:0003528,2.72e-73,34;UBERON:0002020,2.72e-73,34;UBERON:0001017,3.88e-73,81;UBERON:0001049,4.19e-72,56;UBERON:0005068,4.19e-72,56;UBERON:0006241,4.19e-72,56;UBERON:0007135,4.19e-72,56;UBERON:0000073,4.94e-67,53;UBERON:0002616,4.94e-67,53;UBERON:0001016,3.43e-65,89;UBERON:0002619,3.00e-64,22;UBERON:0001950,2.35e-63,20;UBERON:0000955,1.67e-57,68;UBERON:0006238,1.67e-57,68;UBERON:0000956,2.61e-56,25;UBERON:0000203,2.61e-56,25;UBERON:0003056,2.02e-53,61;UBERON:0003075,3.09e-47,82;UBERON:0007284,3.09e-47,82;UBERON:0002346,9.94e-45,86;UBERON:0010371,8.27e-36,104;UBERON:0004121,1.30e-30,171;UBERON:0000924,1.30e-30,171;UBERON:0006601,1.30e-30,171;UBERON:0010314,9.67e-29,132;UBERON:0007023,1.24e-25,114;UBERON:0011216,1.36e-24,223;UBERON:0002420,6.28e-24,9;UBERON:0007245,6.28e-24,9;UBERON:0010009,6.28e-24,9;UBERON:0010011,6.28e-24,9;UBERON:0000454,6.28e-24,9;UBERON:0009663,2.62e-23,7;UBERON:0001872,7.50e-22,5;UBERON:0000369,2.32e-19,4;UBERON:0002435,2.32e-19,4;UBERON:0000204,2.32e-19,4;UBERON:0010082,2.32e-19,4;UBERON:0000125,5.44e-18,9;UBERON:0002308,5.44e-18,9;UBERON:0000200,7.56e-18,6;UBERON:0000025,3.65e-16,192;UBERON:0001871,8.62e-16,6;UBERON:0005383,3.87e-15,3;UBERON:0005382,3.87e-15,3;UBERON:0002021,1.81e-14,5;UBERON:0001870,1.54e-13,3;UBERON:0004111,1.62e-11,240;UBERON:0001873,1.16e-10,2;UBERON:0010122,1.16e-10,2;UBERON:0001897,7.52e-10,2;UBERON:0010225,7.52e-10,2;UBERON:0001875,1.07e-09,2;UBERON:0006514,1.07e-09,2;UBERON:0002702,1.28e-09,2;UBERON:0000349,1.96e-08,5;UBERON:0000483,2.60e-08,306;UBERON:0000119,3.67e-08,309|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.662648841607426,0.348581828608555,1.14027160516907,1.26160425437814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81141936333695,0,6.18631050222156,5.36052049069916,9.56908127479745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0.994147647766298,1.26602474769461,0,0,0,0,0,6.04638594850262,0,0,0,0,0,0,0,0,0,0,1.57705766875147,1.99613798001194,0,0,0,0,0,0,0,0,0,15.0576035588353,14.1097833191727,3.05163472634166,0.552896299656123,0.886642856860642,1.75508317723178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,6.09087558885882,0,0,0,0,4.83962864194656,9.48825561054519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,1.83601308272048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.00420288709789,1.09524303113594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38568906942791,0.953423842781029,0,0,0,0,0,1.64023802976667,0,0,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904980694530854,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,2.92863035764712,1.1267183763585,0.573409195690071,0.443716206147409,0.310482014706917,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.49604575675217,2.8339315265117,0.478901577171454,4.1023272848151,3.27693205088234,1.9364030689981,2.42213468447777,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,1.35075169236789,3.90539049306924,1.03343398250592,1.8390584956233,14.7683198434919,0,0,0,0,0,0,0,0,0,0,0,0.203909198930495,1.97318320688547,0,0,0,14.9259810420202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701818390386317,0,0,0,0,0.150962843566674,0,0,0,0,0,1.17785080268967,0.594092800654172,1.2679671827502,0,0,0,0,0,0,0,0,0,0,0,2.10773619591836,22.6902358976996,0.5290268405154,0,0,0,0,0,0,0.917899467677836,0.534434810531121,3.95148067999833,0.250707539292375,0,0.267964130156178,4.97501663675268,1.65492793379032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0|short_description=p6@GAD2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2572 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4093 | |||
|TSSclassifier=S | |||
|UniProt=Q05329,Q5VZ30 | |||
|association_with_transcript=93bp_to_ENST00000376261,NM_000818,NM_001134366,uc001isp.2,uc001isq.2,uc009xkr.2_5end | |||
|coexpression_cluster_id=C3010 | |||
|description=CAGE_peak_6_at_GAD2_5end | |||
|id=chr10:26505329..26505346,+ | |||
|ontology_enrichment_celltype=CL:0002322!4.30e-12!5 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.35e-07;6!CL:0000404;1.35e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.66e-09,8;CL:0000540,1.29e-07,6;CL:0000031,1.29e-07,6;CL:0000404,1.29e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.69e-12;82!UBERON:0010122;1.11e-10;2!CL:0000031;1.35e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p6@GAD2 | |||
}} |
Revision as of 12:57, 10 September 2013
Short description: | p6@GAD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_GAD2_5end |
Coexpression cluster: | C3010_caudate_putamen_argyrophil_temporal_parietal_globus_duodenum |
Association with transcript: | 93bp_to_ENST00000376261, NM_000818, NM_001134366, uc001isp.2, uc001isq.2, uc009xkr.2_5end |
EntrezGene: | GAD2 |
HGNC: | 4093 |
UniProt: | Q05329Q5VZ30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.66e-09 | 8 |
neuron | 1.29e-07 | 6 |
neuroblast | 1.29e-07 | 6 |
electrically signaling cell | 1.29e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.