FFCP PHASE1:Hg19::chr11:118826999..118827014,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7379|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12579|TSSclassifier=N|UniProt=O00526|association_with_transcript=0bp_to_NM_006760_5end|coexpression_cluster_id=C311|description=CAGE_peak_1_at_UPK2_5end|id=chr11:118826999..118827014,+|ontology_enrichment_celltype=CL:0002076!4.68e-29!43;CL:0000066!2.07e-26!254;CL:0000223!2.28e-22!59;CL:0002251!9.93e-15!21;CL:0002368!6.33e-12!13;CL:0002202!9.72e-09!9;CL:0002632!9.72e-09!9|ontology_enrichment_celltype_v019=CL:0002076;3.66e-20;42!CL:0002251;3.12e-15;20!CL:0002202;3.86e-10;9!CL:0002632;3.86e-10;9!CL:0000349;1.27e-09;19!CL:0002368;1.28e-08;13!CL:0002621;1.10e-07;3!CL:0002577;5.33e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,5.40e-27,42;CL:0000066,3.96e-22,253;CL:0000223,3.55e-21,58;CL:0002251,4.19e-15,20;CL:0002202,3.69e-10,9;CL:0002632,3.69e-10,9;CL:0000349,1.42e-09,19;CL:0002368,1.15e-08,13;CL:0002621,1.20e-07,3;CL:0002577,5.63e-07,3|ontology_enrichment_development_v019=CL:0000223;1.56e-11;58|ontology_enrichment_disease=DOID:305!4.87e-18!106;DOID:1749!6.30e-12!14;DOID:0050687!7.65e-12!143;DOID:299!2.92e-10!25;DOID:5093!7.40e-07!4;DOID:1612!7.40e-07!4|ontology_enrichment_disease_v019=DOID:1749;3.87e-13;14!DOID:5093;8.10e-10;4!DOID:1612;8.10e-10;4!DOID:299;1.29e-07;25|ontology_enrichment_disease_v019_2=DOID:305,1.04e-13,106;DOID:1749,4.94e-13,14;DOID:5093,8.21e-10,4;DOID:1612,8.21e-10,4;DOID:0050687,1.42e-09,143;DOID:7,6.57e-08,39;DOID:299,1.31e-07,25|ontology_enrichment_uberon=UBERON:0004119!5.79e-21!169;UBERON:0000925!5.79e-21!169;UBERON:0006595!5.79e-21!169;UBERON:0001004!1.72e-17!72;UBERON:0000077!1.26e-16!130;UBERON:0001007!8.35e-16!155;UBERON:0001555!8.35e-16!155;UBERON:0007026!8.35e-16!155;UBERON:0004921!8.03e-14!129;UBERON:0004185!8.03e-14!129;UBERON:0000065!1.51e-13!53;UBERON:0000161!2.80e-13!35;UBERON:0005631!1.28e-12!14;UBERON:0000158!1.28e-12!14;UBERON:0000072!2.94e-10!46;UBERON:0000344!7.90e-10!12;UBERON:0003124!1.48e-09!7;UBERON:0001041!2.73e-09!98;UBERON:0000464!2.81e-09!104;UBERON:0001008!5.17e-09!45;UBERON:0005153!5.42e-09!37;UBERON:0005911!6.00e-09!82;UBERON:0008947!6.37e-09!38;UBERON:0003258!6.37e-09!38;UBERON:0005178!6.74e-09!34;UBERON:0002224!6.74e-09!34;UBERON:0005181!1.69e-08!35;UBERON:0000064!2.93e-08!219;UBERON:0006554!3.28e-08!44;UBERON:0000166!5.99e-08!21;UBERON:0000466!1.04e-07!126;UBERON:0007196!1.47e-07!14;UBERON:0001558!1.47e-07!14;UBERON:0003064!1.78e-07!37;UBERON:0000915!1.95e-07!52;UBERON:0004807!2.12e-07!28;UBERON:0000974!2.39e-07!10;UBERON:0000478!2.56e-07!24;UBERON:0001046!4.06e-07!19;UBERON:0003729!6.37e-07!5;UBERON:0000162!7.78e-07!14;UBERON:0001353!7.78e-07!14;UBERON:0000163!7.78e-07!14;UBERON:0006866!7.78e-07!14;UBERON:0000164!7.78e-07!14;UBERON:0000931!7.78e-07!14;UBERON:0005177!8.14e-07!107;UBERON:0003975!8.24e-07!22;UBERON:0005156!8.74e-07!59;UBERON:0000990!8.74e-07!59|ontology_enrichment_uberon_v019=UBERON:0000344;8.63e-13;20!UBERON:0000974;1.22e-11;6!UBERON:0000478;1.07e-10;24!UBERON:0005631;3.87e-10;10!UBERON:0000158;3.87e-10;10!UBERON:0003350;8.27e-10;8!UBERON:0004807;1.68e-09;22!UBERON:0003729;2.57e-09;13!UBERON:0005911;3.87e-09;36!UBERON:0001987;7.08e-09;4!UBERON:0003343;1.47e-08;4!UBERON:0004785;1.47e-08;4!UBERON:0003929;3.41e-08;7!UBERON:0002294;3.71e-08;7!UBERON:0001173;3.71e-08;7!UBERON:0001949;1.10e-07;3!UBERON:0000077;1.27e-07;27!UBERON:0000305;1.50e-07;7!UBERON:0000485;1.91e-07;7!UBERON:0000161;2.16e-07;19!UBERON:0000166;2.16e-07;19|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.31e-17,14;UBERON:0000158,8.31e-17,14;UBERON:0004119,9.42e-15,160;UBERON:0000925,9.42e-15,160;UBERON:0006595,9.42e-15,160;UBERON:0000161,4.69e-13,36;UBERON:0001008,7.06e-13,48;UBERON:0000344,9.90e-13,20;UBERON:0001007,9.60e-12,145;UBERON:0001555,9.60e-12,145;UBERON:0007026,9.60e-12,145;UBERON:0006554,1.13e-11,47;UBERON:0003124,3.74e-11,7;UBERON:0004923,4.74e-11,66;UBERON:0000478,1.16e-10,24;UBERON:0003350,8.49e-10,8;UBERON:0003729,3.49e-09,13;UBERON:0005911,5.23e-09,82;UBERON:0001987,6.94e-09,4;UBERON:0004340,6.94e-09,4;UBERON:0003343,1.74e-08,4;UBERON:0004785,1.74e-08,4;UBERON:0003975,2.84e-08,22;UBERON:0001046,3.08e-08,19;UBERON:0004921,3.76e-08,118;UBERON:0001949,1.20e-07,3;UBERON:0000166,1.66e-07,22;UBERON:0000305,1.69e-07,7;UBERON:0005177,2.12e-07,101;UBERON:0000162,4.03e-07,14;UBERON:0001353,4.03e-07,14;UBERON:0000163,4.03e-07,14;UBERON:0006866,4.03e-07,14;UBERON:0000164,4.03e-07,14;UBERON:0000931,4.03e-07,14;UBERON:0004175,5.04e-07,25;UBERON:0000077,5.42e-07,29;UBERON:0000995,5.67e-07,21;UBERON:0004807,5.81e-07,28;UBERON:0001004,6.67e-07,74;UBERON:0005153,9.09e-07,37|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,4.88460817580699,2.18441372130172,3.16520373874144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23852898652861,1.83884244895785,2.409647350226,2.21852406100073,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7379 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12579 | |||
|TSSclassifier=N | |||
|UniProt=O00526 | |||
|association_with_transcript=0bp_to_NM_006760_5end | |||
|coexpression_cluster_id=C311 | |||
|description=CAGE_peak_1_at_UPK2_5end | |||
|id=chr11:118826999..118827014,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.68e-29!43;CL:0000066!2.07e-26!254;CL:0000223!2.28e-22!59;CL:0002251!9.93e-15!21;CL:0002368!6.33e-12!13;CL:0002202!9.72e-09!9;CL:0002632!9.72e-09!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.66e-20;42!CL:0002251;3.12e-15;20!CL:0002202;3.86e-10;9!CL:0002632;3.86e-10;9!CL:0000349;1.27e-09;19!CL:0002368;1.28e-08;13!CL:0002621;1.10e-07;3!CL:0002577;5.33e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.40e-27,42;CL:0000066,3.96e-22,253;CL:0000223,3.55e-21,58;CL:0002251,4.19e-15,20;CL:0002202,3.69e-10,9;CL:0002632,3.69e-10,9;CL:0000349,1.42e-09,19;CL:0002368,1.15e-08,13;CL:0002621,1.20e-07,3;CL:0002577,5.63e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.56e-11;58 | |||
|ontology_enrichment_disease=DOID:305!4.87e-18!106;DOID:1749!6.30e-12!14;DOID:0050687!7.65e-12!143;DOID:299!2.92e-10!25;DOID:5093!7.40e-07!4;DOID:1612!7.40e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.87e-13;14!DOID:5093;8.10e-10;4!DOID:1612;8.10e-10;4!DOID:299;1.29e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.04e-13,106;DOID:1749,4.94e-13,14;DOID:5093,8.21e-10,4;DOID:1612,8.21e-10,4;DOID:0050687,1.42e-09,143;DOID:7,6.57e-08,39;DOID:299,1.31e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.79e-21!169;UBERON:0000925!5.79e-21!169;UBERON:0006595!5.79e-21!169;UBERON:0001004!1.72e-17!72;UBERON:0000077!1.26e-16!130;UBERON:0001007!8.35e-16!155;UBERON:0001555!8.35e-16!155;UBERON:0007026!8.35e-16!155;UBERON:0004921!8.03e-14!129;UBERON:0004185!8.03e-14!129;UBERON:0000065!1.51e-13!53;UBERON:0000161!2.80e-13!35;UBERON:0005631!1.28e-12!14;UBERON:0000158!1.28e-12!14;UBERON:0000072!2.94e-10!46;UBERON:0000344!7.90e-10!12;UBERON:0003124!1.48e-09!7;UBERON:0001041!2.73e-09!98;UBERON:0000464!2.81e-09!104;UBERON:0001008!5.17e-09!45;UBERON:0005153!5.42e-09!37;UBERON:0005911!6.00e-09!82;UBERON:0008947!6.37e-09!38;UBERON:0003258!6.37e-09!38;UBERON:0005178!6.74e-09!34;UBERON:0002224!6.74e-09!34;UBERON:0005181!1.69e-08!35;UBERON:0000064!2.93e-08!219;UBERON:0006554!3.28e-08!44;UBERON:0000166!5.99e-08!21;UBERON:0000466!1.04e-07!126;UBERON:0007196!1.47e-07!14;UBERON:0001558!1.47e-07!14;UBERON:0003064!1.78e-07!37;UBERON:0000915!1.95e-07!52;UBERON:0004807!2.12e-07!28;UBERON:0000974!2.39e-07!10;UBERON:0000478!2.56e-07!24;UBERON:0001046!4.06e-07!19;UBERON:0003729!6.37e-07!5;UBERON:0000162!7.78e-07!14;UBERON:0001353!7.78e-07!14;UBERON:0000163!7.78e-07!14;UBERON:0006866!7.78e-07!14;UBERON:0000164!7.78e-07!14;UBERON:0000931!7.78e-07!14;UBERON:0005177!8.14e-07!107;UBERON:0003975!8.24e-07!22;UBERON:0005156!8.74e-07!59;UBERON:0000990!8.74e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000344;8.63e-13;20!UBERON:0000974;1.22e-11;6!UBERON:0000478;1.07e-10;24!UBERON:0005631;3.87e-10;10!UBERON:0000158;3.87e-10;10!UBERON:0003350;8.27e-10;8!UBERON:0004807;1.68e-09;22!UBERON:0003729;2.57e-09;13!UBERON:0005911;3.87e-09;36!UBERON:0001987;7.08e-09;4!UBERON:0003343;1.47e-08;4!UBERON:0004785;1.47e-08;4!UBERON:0003929;3.41e-08;7!UBERON:0002294;3.71e-08;7!UBERON:0001173;3.71e-08;7!UBERON:0001949;1.10e-07;3!UBERON:0000077;1.27e-07;27!UBERON:0000305;1.50e-07;7!UBERON:0000485;1.91e-07;7!UBERON:0000161;2.16e-07;19!UBERON:0000166;2.16e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.31e-17,14;UBERON:0000158,8.31e-17,14;UBERON:0004119,9.42e-15,160;UBERON:0000925,9.42e-15,160;UBERON:0006595,9.42e-15,160;UBERON:0000161,4.69e-13,36;UBERON:0001008,7.06e-13,48;UBERON:0000344,9.90e-13,20;UBERON:0001007,9.60e-12,145;UBERON:0001555,9.60e-12,145;UBERON:0007026,9.60e-12,145;UBERON:0006554,1.13e-11,47;UBERON:0003124,3.74e-11,7;UBERON:0004923,4.74e-11,66;UBERON:0000478,1.16e-10,24;UBERON:0003350,8.49e-10,8;UBERON:0003729,3.49e-09,13;UBERON:0005911,5.23e-09,82;UBERON:0001987,6.94e-09,4;UBERON:0004340,6.94e-09,4;UBERON:0003343,1.74e-08,4;UBERON:0004785,1.74e-08,4;UBERON:0003975,2.84e-08,22;UBERON:0001046,3.08e-08,19;UBERON:0004921,3.76e-08,118;UBERON:0001949,1.20e-07,3;UBERON:0000166,1.66e-07,22;UBERON:0000305,1.69e-07,7;UBERON:0005177,2.12e-07,101;UBERON:0000162,4.03e-07,14;UBERON:0001353,4.03e-07,14;UBERON:0000163,4.03e-07,14;UBERON:0006866,4.03e-07,14;UBERON:0000164,4.03e-07,14;UBERON:0000931,4.03e-07,14;UBERON:0004175,5.04e-07,25;UBERON:0000077,5.42e-07,29;UBERON:0000995,5.67e-07,21;UBERON:0004807,5.81e-07,28;UBERON:0001004,6.67e-07,74;UBERON:0005153,9.09e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,4.88460817580699,2.18441372130172,3.16520373874144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23852898652861,1.83884244895785,2.409647350226,2.21852406100073,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916853528483988,1.82147644146271,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.4004318630668,4.36393792945335,8.31733326628111,0.365921118388786,0.132529768321485,3.25343040034651,1.24393266018445,12.6160425437814,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0,0.220587945464788,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,25.2126299013383,0,0.658501712451753,0,0,1.01847289674383,0,0,0,0,0,0,0,0,41.8808330918416,31.7639879975103,0,0,0,3.74935335947108,0,0,0.179117045405697,0,0,0,0.088048434013226,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,6.65741758041988,4.5358543999452,0,0,0,0,0,0,0,0,0,0,0,0,6.28469137876436,0.601519410909855,1.65745780084613,0,0,0,0.451199612907412,1.61732207919271,0,1.46139224653261,0,0,0,0,0,0,0,2.29388645740534,2.49322802678617,0.447749509444357,0,0,0,0,0,0.309123034943167,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,1.4875642382488,0.192190067365106,0.127612712494584,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,4.69211592875051,1.08890984861323,1.03558180854457,0,0,5.32116184244011,0.918893600827838,0,0,0,0,0,0,0,0,0,49.0864726184313,34.0605900213634,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53614521001611,35.6357616999166,1.22864280839693,0,0,0,0,0,0,0,0,0,0,0,14.5586728858669,1.43216939740487,0,37.3858507363978,0,0,0,0,0,14.0630990986026,2.44887999989348,0,3.07242310370849,3.55955110409873,4.01859059005492,0,0,0,0,0,0,0,0,0,0,12.4087132407957,0.230850775511391,0,0.922255617552241,20.9135311474769,268.793598135048,26.4770962577493,0.0915975934018623,33.0481561131554,0,0,0,0,0,0,0,0,0,10.7733653385037,4.38194521445217,0,0,0,0,0,0,0,0,0,0,0,98.6149679417732,0,0,0,0,0,0,0,0,0,0,0,12.8074295713407,0,12.1491816834592,11.2691257026534,2.52471699083167,0.873633341210151,0,0,0.0730893170861856,0,1.55182426381471,0,0.451961481561065,0,0,0.0633107959558787,8.60426084033133,27.7349518070307,0,0,0.144090417154106,0,0,0,0,4.00679858848552,0,0,0,0,0,0,0,0,0,0,0,0,154.152188385221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0,9.39217125277945,1.18208560948797,8.49764327786969,0,0,0.767660789277781,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0.171086837884329,135.324484284801,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,1.11903606175556,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.37960170256666,1.06172751012966,2.56800037930351,2.31051332300676,0,0,0,0,0,0,13.3572414185525,0,49.088220624059,0,0,0,0,0,0,4.46590060550365,0,4.59944739502543,0,0,0,0,4.70122561861986,0,0,0,0.0657727735628491,0.118193840883968,4.78295028135897,54.3172202525557,0.157115589916002,610.713043860746,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,1.38251932362818,0,0,0,0,15.5792670609954,0,0,0.111855431797792,0.294450700845729,0.121917924982269,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,9.0704879048945,0,0,0,0,0,0,0,0,0.357107877211315,1.05868461514708,1.28386186702669,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0.218531143927391,0.126698501011437,0,0,0.551369397209069,0,0,0,0,0,1.49263787330687,1.1903221573187,0.387533459016037,0.496597714366863,0,0,0,0.435433495793923,1.02669990325584,1.81850543139386,0.286888821570705,0.332660356546013,2.60490459555118,0,0,0.0898252021065869,42.2353696326218,0.122241444182866,0.406896178315738,33.9535954834611,0.201273793591026,0 | |||
|short_description=p1@UPK2 | |||
}} |
Revision as of 16:05, 10 September 2013
Short description: | p1@UPK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_UPK2_5end |
Coexpression cluster: | C311_rectal_heart_choriocarcinoma_placenta_chorionic_lung_ductal |
Association with transcript: | 0bp_to_NM_006760_5end |
EntrezGene: | UPK2 |
HGNC: | 12579 |
UniProt: | O00526 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.40e-27 | 42 |
epithelial cell | 3.96e-22 | 253 |
endodermal cell | 3.55e-21 | 58 |
epithelial cell of alimentary canal | 4.19e-15 | 20 |
epithelial cell of tracheobronchial tree | 3.69e-10 | 9 |
epithelial cell of lower respiratory tract | 3.69e-10 | 9 |
extraembryonic cell | 1.42e-09 | 19 |
respiratory epithelial cell | 1.15e-08 | 13 |
gingival epithelial cell | 1.20e-07 | 3 |
placental epithelial cell | 5.63e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.04e-13 | 106 |
squamous cell carcinoma | 4.94e-13 | 14 |
thoracic cancer | 8.21e-10 | 4 |
breast cancer | 8.21e-10 | 4 |
cell type cancer | 1.42e-09 | 143 |
disease of anatomical entity | 6.57e-08 | 39 |
adenocarcinoma | 1.31e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.