FFCP PHASE1:Hg19::chr1:12404906..12404923,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55187|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23595|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000469054_5end|description=CAGE_peak_7_at_VPS13D_5end|id=chr1:12404906..12404923,+|ontology_enrichment_celltype=CL:0000763!1.30e-34!112;CL:0000049!1.30e-34!112;CL:0000557!9.99e-31!71;CL:0000766!6.20e-29!76;CL:0000037!1.67e-28!172;CL:0000566!1.67e-28!172;CL:0000839!3.42e-28!70;CL:0002009!1.99e-26!65;CL:0002194!2.89e-26!63;CL:0000576!2.89e-26!63;CL:0000040!2.89e-26!63;CL:0000559!2.89e-26!63;CL:0000988!2.08e-25!182;CL:0002032!8.48e-25!165;CL:0000837!8.48e-25!165;CL:0000738!2.11e-20!140;CL:0002031!1.20e-17!124;CL:0002087!8.36e-17!119;CL:0002057!1.43e-16!42;CL:0000860!8.19e-15!45;CL:0002393!7.54e-10!9;CL:0002397!7.54e-10!9|ontology_enrichment_celltype_v019=CL:0000576;1.20e-17;48!CL:0000473;1.81e-16;39!CL:0000234;1.81e-16;39!CL:0000766;1.12e-14;69!CL:0000235;3.08e-14;6!CL:0000763;5.08e-14;100!CL:0000784;2.06e-12;3!CL:0002619;8.07e-12;3!CL:0000451;3.07e-11;10!CL:0000860;5.51e-10;33!CL:0002057;5.51e-10;33!CL:0000840;2.08e-09;5!CL:0000097;5.35e-07;5!CL:0000988;7.35e-07;177|ontology_enrichment_celltype_v019_2=CL:0000557,4.65e-48,67;CL:0000839,1.24e-45,66;CL:0000763,1.34e-44,108;CL:0000049,1.34e-44,108;CL:0000766,5.42e-44,72;CL:0002194,1.09e-41,59;CL:0000576,1.09e-41,59;CL:0000040,1.09e-41,59;CL:0000559,1.09e-41,59;CL:0002009,4.24e-40,61;CL:0000037,8.17e-32,168;CL:0000988,1.15e-29,177;CL:0002032,2.88e-28,161;CL:0000837,2.88e-28,161;CL:0000738,7.29e-26,136;CL:0000473,5.11e-24,48;CL:0000234,5.11e-24,48;CL:0002031,3.82e-23,120;CL:0002087,6.87e-21,115;CL:0000860,3.42e-15,42;CL:0002057,3.42e-15,42;CL:0000235,2.51e-14,6;CL:0000784,2.04e-12,3;CL:0002619,8.74e-12,3;CL:0000451,1.62e-11,10;CL:0000840,9.50e-10,5;CL:0001029,9.50e-10,5;CL:0000134,1.22e-09,354;CL:0002320,2.95e-09,361;CL:0000219,6.56e-08,386;CL:0000097,4.60e-07,5;CL:0002028,4.60e-07,5|ontology_enrichment_development_v019=CL:0000049;3.52e-16;108!CL:0002057;6.44e-12;42|ontology_enrichment_disease=DOID:8692!8.10e-10!31;DOID:1240!1.67e-07!39|ontology_enrichment_disease_v019=DOID:8692;3.22e-07;31|ontology_enrichment_disease_v019_2=DOID:8692,1.63e-07,31|ontology_enrichment_uberon=UBERON:0002390!3.95e-30!102;UBERON:0003061!3.95e-30!102;UBERON:0002371!7.37e-28!80;UBERON:0002193!1.27e-27!112;UBERON:0007023!9.04e-27!115;UBERON:0001474!1.19e-24!86;UBERON:0004765!1.91e-20!101;UBERON:0001434!1.91e-20!101;UBERON:0002405!2.49e-19!115;UBERON:0001049!1.15e-15!57;UBERON:0005068!1.15e-15!57;UBERON:0006241!1.15e-15!57;UBERON:0007135!1.15e-15!57;UBERON:0002780!3.94e-14!41;UBERON:0001890!3.94e-14!41;UBERON:0006240!3.94e-14!41;UBERON:0003080!1.36e-13!42;UBERON:0001893!7.63e-13!34;UBERON:0002791!3.84e-12!33;UBERON:0002616!1.57e-11!59;UBERON:0002020!2.44e-11!34;UBERON:0003528!2.44e-11!34;UBERON:0001869!3.59e-11!32;UBERON:0002619!1.70e-10!22;UBERON:0001950!1.87e-10!20;UBERON:0002346!4.86e-10!90;UBERON:0002204!6.05e-10!167;UBERON:0003075!1.76e-09!86;UBERON:0007284!1.76e-09!86;UBERON:0001017!1.89e-09!82;UBERON:0005743!3.35e-09!86;UBERON:0000955!6.71e-09!69;UBERON:0006238!6.71e-09!69;UBERON:0000956!1.04e-08!25;UBERON:0000203!1.04e-08!25;UBERON:0000073!2.07e-08!94;UBERON:0001016!2.07e-08!94;UBERON:0003081!8.86e-08!216;UBERON:0003056!1.26e-07!61|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.11e-44,76;UBERON:0001474,2.73e-40,82;UBERON:0004765,5.58e-36,90;UBERON:0002405,1.49e-34,93;UBERON:0002390,1.77e-34,98;UBERON:0003061,1.77e-34,98;UBERON:0001434,9.56e-34,100;UBERON:0002193,1.68e-30,108;UBERON:0002204,5.28e-18,167;UBERON:0003081,3.07e-13,203;UBERON:0002384,1.99e-09,371;UBERON:0000926,8.70e-07,315;UBERON:0004120,8.70e-07,315;UBERON:0006603,8.70e-07,315|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0.993374274723366,0.738905305049512,0.236132343941038,1.18009283054671,0.767658796194425,0.928896739896456,0,0,0,0,0,0.293600439334847,1.10799081706375,0.200544447470142,0.651032612147555,5.59788685599811,2.59114932815184,2.31818010870768,0.145398238779565,0.377875943688809,0.242584061187816,0,0,0.619412741790207,1.43846196161075,3.07392847834921,2.60130452877444,0.344745680736619,0,0,0.188242339542605,0,0.449446968890169,0,0,0,2.63881040149373,4.78712778291916,3.83602275479425,0,0,0,2.26123798731069,4.69334626578181,1.95469960234605,0,0,0.316462387440884,0.845021145247767,1.06302149982522,1.25795187305026,1.46027220490444,0.600707571366025,1.76798145366788,0.855038231223746,0.79566670879636,1.27864907635244,0,0,0,0.426730222566507,0.400395987036012,0.574752439954483,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,1.62273696827342,1.74129737299267,1.46253756570752,7.87019060207628,10.8679033048224,9.28643753323912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000469054_5end | |||
|description=CAGE_peak_7_at_VPS13D_5end | |||
|id=chr1:12404906..12404923,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.30e-34!112;CL:0000049!1.30e-34!112;CL:0000557!9.99e-31!71;CL:0000766!6.20e-29!76;CL:0000037!1.67e-28!172;CL:0000566!1.67e-28!172;CL:0000839!3.42e-28!70;CL:0002009!1.99e-26!65;CL:0002194!2.89e-26!63;CL:0000576!2.89e-26!63;CL:0000040!2.89e-26!63;CL:0000559!2.89e-26!63;CL:0000988!2.08e-25!182;CL:0002032!8.48e-25!165;CL:0000837!8.48e-25!165;CL:0000738!2.11e-20!140;CL:0002031!1.20e-17!124;CL:0002087!8.36e-17!119;CL:0002057!1.43e-16!42;CL:0000860!8.19e-15!45;CL:0002393!7.54e-10!9;CL:0002397!7.54e-10!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;1.20e-17;48!CL:0000473;1.81e-16;39!CL:0000234;1.81e-16;39!CL:0000766;1.12e-14;69!CL:0000235;3.08e-14;6!CL:0000763;5.08e-14;100!CL:0000784;2.06e-12;3!CL:0002619;8.07e-12;3!CL:0000451;3.07e-11;10!CL:0000860;5.51e-10;33!CL:0002057;5.51e-10;33!CL:0000840;2.08e-09;5!CL:0000097;5.35e-07;5!CL:0000988;7.35e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,4.65e-48,67;CL:0000839,1.24e-45,66;CL:0000763,1.34e-44,108;CL:0000049,1.34e-44,108;CL:0000766,5.42e-44,72;CL:0002194,1.09e-41,59;CL:0000576,1.09e-41,59;CL:0000040,1.09e-41,59;CL:0000559,1.09e-41,59;CL:0002009,4.24e-40,61;CL:0000037,8.17e-32,168;CL:0000988,1.15e-29,177;CL:0002032,2.88e-28,161;CL:0000837,2.88e-28,161;CL:0000738,7.29e-26,136;CL:0000473,5.11e-24,48;CL:0000234,5.11e-24,48;CL:0002031,3.82e-23,120;CL:0002087,6.87e-21,115;CL:0000860,3.42e-15,42;CL:0002057,3.42e-15,42;CL:0000235,2.51e-14,6;CL:0000784,2.04e-12,3;CL:0002619,8.74e-12,3;CL:0000451,1.62e-11,10;CL:0000840,9.50e-10,5;CL:0001029,9.50e-10,5;CL:0000134,1.22e-09,354;CL:0002320,2.95e-09,361;CL:0000219,6.56e-08,386;CL:0000097,4.60e-07,5;CL:0002028,4.60e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000049;3.52e-16;108!CL:0002057;6.44e-12;42 | |||
|ontology_enrichment_disease=DOID:8692!8.10e-10!31;DOID:1240!1.67e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.22e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.63e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.95e-30!102;UBERON:0003061!3.95e-30!102;UBERON:0002371!7.37e-28!80;UBERON:0002193!1.27e-27!112;UBERON:0007023!9.04e-27!115;UBERON:0001474!1.19e-24!86;UBERON:0004765!1.91e-20!101;UBERON:0001434!1.91e-20!101;UBERON:0002405!2.49e-19!115;UBERON:0001049!1.15e-15!57;UBERON:0005068!1.15e-15!57;UBERON:0006241!1.15e-15!57;UBERON:0007135!1.15e-15!57;UBERON:0002780!3.94e-14!41;UBERON:0001890!3.94e-14!41;UBERON:0006240!3.94e-14!41;UBERON:0003080!1.36e-13!42;UBERON:0001893!7.63e-13!34;UBERON:0002791!3.84e-12!33;UBERON:0002616!1.57e-11!59;UBERON:0002020!2.44e-11!34;UBERON:0003528!2.44e-11!34;UBERON:0001869!3.59e-11!32;UBERON:0002619!1.70e-10!22;UBERON:0001950!1.87e-10!20;UBERON:0002346!4.86e-10!90;UBERON:0002204!6.05e-10!167;UBERON:0003075!1.76e-09!86;UBERON:0007284!1.76e-09!86;UBERON:0001017!1.89e-09!82;UBERON:0005743!3.35e-09!86;UBERON:0000955!6.71e-09!69;UBERON:0006238!6.71e-09!69;UBERON:0000956!1.04e-08!25;UBERON:0000203!1.04e-08!25;UBERON:0000073!2.07e-08!94;UBERON:0001016!2.07e-08!94;UBERON:0003081!8.86e-08!216;UBERON:0003056!1.26e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.11e-44,76;UBERON:0001474,2.73e-40,82;UBERON:0004765,5.58e-36,90;UBERON:0002405,1.49e-34,93;UBERON:0002390,1.77e-34,98;UBERON:0003061,1.77e-34,98;UBERON:0001434,9.56e-34,100;UBERON:0002193,1.68e-30,108;UBERON:0002204,5.28e-18,167;UBERON:0003081,3.07e-13,203;UBERON:0002384,1.99e-09,371;UBERON:0000926,8.70e-07,315;UBERON:0004120,8.70e-07,315;UBERON:0006603,8.70e-07,315 | |||
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|short_description=p7@VPS13D | |||
}} |
Revision as of 23:54, 11 September 2013
Short description: | p7@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000469054_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.11e-44 | 76 |
bone element | 2.73e-40 | 82 |
skeletal element | 5.58e-36 | 90 |
immune system | 1.49e-34 | 93 |
hematopoietic system | 1.77e-34 | 98 |
blood island | 1.77e-34 | 98 |
skeletal system | 9.56e-34 | 100 |
hemolymphoid system | 1.68e-30 | 108 |
musculoskeletal system | 5.28e-18 | 167 |
lateral plate mesoderm | 3.07e-13 | 203 |
connective tissue | 1.99e-09 | 371 |
mesoderm | 8.70e-07 | 315 |
mesoderm-derived structure | 8.70e-07 | 315 |
presumptive mesoderm | 8.70e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.63e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.