FFCP PHASE1:Hg19::chr1:170632310..170632321,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5396|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9142|TSSclassifier=S|UniProt=P54821|association_with_transcript=35bp_to_ENST00000367760_5end|coexpression_cluster_id=C929|description=CAGE_peak_15_at_PRRX1_5end|id=chr1:170632310..170632321,+|ontology_enrichment_celltype=CL:0000055!4.52e-23!180;CL:0000057!1.15e-22!75;CL:0002620!6.92e-12!23;CL:0002334!2.12e-08!12;CL:0002570!4.27e-07!8;CL:0002556!4.53e-07!6|ontology_enrichment_celltype_v019=CL:0002620;1.02e-12;23!CL:0002556;5.99e-11;6!CL:0000057;3.13e-10;73!CL:0002552;4.10e-09;5!CL:0002334;5.04e-09;12!CL:0002570;2.34e-07;8!CL:0002320;3.56e-07;188|ontology_enrichment_celltype_v019_2=CL:0000057,4.70e-28,76;CL:0002620,1.26e-12,23;CL:0002556,4.69e-11,6;CL:0002334,4.38e-09,12;CL:0002552,4.60e-09,5;CL:0000134,8.91e-08,354;CL:0002320,1.25e-07,361;CL:0000048,1.28e-07,427;CL:0002570,3.21e-07,8;CL:0000723,3.23e-07,433|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!7.54e-16!95;UBERON:0000914!2.22e-13!83;UBERON:0002329!2.22e-13!83;UBERON:0003077!2.22e-13!83;UBERON:0003059!2.22e-13!83;UBERON:0007282!2.22e-13!83;UBERON:0009618!2.22e-13!83;UBERON:0007285!2.22e-13!83;UBERON:0000475!2.62e-12!365;UBERON:0002199!3.05e-12!45;UBERON:0002416!3.05e-12!45;UBERON:0007023!1.38e-10!115;UBERON:0002097!2.73e-10!40;UBERON:0004290!1.31e-09!70;UBERON:0000078!3.03e-09!18;UBERON:0001013!4.04e-09!14;UBERON:0000486!3.44e-08!82;UBERON:0000479!8.71e-08!787;UBERON:0000165!1.48e-07!28;UBERON:0000930!1.48e-07!28;UBERON:0001758!4.53e-07!6;UBERON:0003672!4.53e-07!6;UBERON:0000153!8.27e-07!129;UBERON:0007811!8.27e-07!129|ontology_enrichment_uberon_v019=UBERON:0001758;5.99e-11;6!UBERON:0003672;5.99e-11;6!UBERON:0002067;1.23e-10;9!UBERON:0000165;7.68e-10;28!UBERON:0001013;1.27e-09;14!UBERON:0002199;1.70e-09;46!UBERON:0002416;1.70e-09;46!UBERON:0003129;3.29e-09;7!UBERON:0002384;3.38e-09;198!UBERON:0003102;3.62e-09;50!UBERON:0002097;1.03e-08;41!UBERON:0011137;2.29e-07;11!UBERON:0010323;2.29e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0003102,9.89e-19,99;UBERON:0002199,7.11e-15,46;UBERON:0002416,7.11e-15,46;UBERON:0002097,1.38e-11,41;UBERON:0001758,4.69e-11,6;UBERON:0003672,4.69e-11,6;UBERON:0000165,7.41e-11,29;UBERON:0000930,7.41e-11,29;UBERON:0002067,2.13e-10,9;UBERON:0004016,2.13e-10,9;UBERON:0010083,2.13e-10,9;UBERON:0001013,1.12e-09,14;UBERON:0003129,2.68e-09,7;UBERON:0002384,3.01e-08,371;UBERON:0001444,1.15e-07,49;UBERON:0010323,1.99e-07,11;UBERON:0000033,7.20e-07,56;UBERON:0011137,8.60e-07,14|phase1_expression=2.90685406832891,4.06790995392868,0.281908808191942,0,0,0.872338524100369,0,1.89515962028049,2.61185628199839,0,0,0,0,0.495065411840187,0.331397375727916,2.01697543935533,2.41077811209591,2.19093027116212,0.487932798790507,0,0.204000691244253,0,0,0.273748850145768,0,0,0.328402357799783,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,1.00267582127178,2.02785126545153,3.9764297352555,2.43317435151318,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,1.8994576749687,0.397227542439656,2.0078563452417,4.61068896857864,0,0,0.24666754841716,1.24484414159907,0.134710672069688,0.490385709340376,0,0,0,2.18512053781224,0,3.28787097213962,2.23125547423153,2.26622122115384,2.10676210053373,4.28723759635276,2.33385202892359,4.33968280938215,7.12801714369232,8.40707559547093,0,0,5.72342787443825,5.88057043398232,4.43302584774693,4.82875382968922,5.82326812018137,12.0190447125277,0.226864366320042,1.97328599257748,1.2813443329114,0.423863802319124,1.20036438433761,0.721367704669072,1.54584324027377,1.11670113798954,2.53164498361899,2.33848812386877,0.757301322732344,0.460249493211497,6.30419621593366,1.77504796258307,1.30977727695932,0.67824236924195,0,0,0,0,0,0,0,0,0,9.38697193978896,7.07565032012174,1.38134921352481,1.39310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07986957055916,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.224262168690721,0,0.7333828582095,0,3.57656445851882,0.845302752556,0.531876233169741,0,0.771622122786426,0,1.5985330740966,0,0,0.823240336780769,0.65147236858747,0,0.791951872933429,0,0,0,0,0,0,0.479249710983165,0,5.70547620162874,0.289562613335158,1.2328579353023,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,1.10422342547226,0,0.271265023699736,5.40724239980099,4.63915370872621,1.73472656537328,7.9656162195045,0.902838299183157,2.27407504055985,3.10419213877515,1.99267679560631,2.58116835958384,2.69339204851057,0.195801157462741,0.343143423810856,0,0,0,0,0,0,0.744323423456331,5.83155498494637,3.36792113319688,0.128139149255701,1.02341449813341,0.160853921143607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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5396 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |||
|TSSclassifier=S | |||
|UniProt=P54821 | |||
|association_with_transcript=35bp_to_ENST00000367760_5end | |||
|coexpression_cluster_id=C929 | |||
|description=CAGE_peak_15_at_PRRX1_5end | |||
|id=chr1:170632310..170632321,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.52e-23!180;CL:0000057!1.15e-22!75;CL:0002620!6.92e-12!23;CL:0002334!2.12e-08!12;CL:0002570!4.27e-07!8;CL:0002556!4.53e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.02e-12;23!CL:0002556;5.99e-11;6!CL:0000057;3.13e-10;73!CL:0002552;4.10e-09;5!CL:0002334;5.04e-09;12!CL:0002570;2.34e-07;8!CL:0002320;3.56e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.70e-28,76;CL:0002620,1.26e-12,23;CL:0002556,4.69e-11,6;CL:0002334,4.38e-09,12;CL:0002552,4.60e-09,5;CL:0000134,8.91e-08,354;CL:0002320,1.25e-07,361;CL:0000048,1.28e-07,427;CL:0002570,3.21e-07,8;CL:0000723,3.23e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!7.54e-16!95;UBERON:0000914!2.22e-13!83;UBERON:0002329!2.22e-13!83;UBERON:0003077!2.22e-13!83;UBERON:0003059!2.22e-13!83;UBERON:0007282!2.22e-13!83;UBERON:0009618!2.22e-13!83;UBERON:0007285!2.22e-13!83;UBERON:0000475!2.62e-12!365;UBERON:0002199!3.05e-12!45;UBERON:0002416!3.05e-12!45;UBERON:0007023!1.38e-10!115;UBERON:0002097!2.73e-10!40;UBERON:0004290!1.31e-09!70;UBERON:0000078!3.03e-09!18;UBERON:0001013!4.04e-09!14;UBERON:0000486!3.44e-08!82;UBERON:0000479!8.71e-08!787;UBERON:0000165!1.48e-07!28;UBERON:0000930!1.48e-07!28;UBERON:0001758!4.53e-07!6;UBERON:0003672!4.53e-07!6;UBERON:0000153!8.27e-07!129;UBERON:0007811!8.27e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;5.99e-11;6!UBERON:0003672;5.99e-11;6!UBERON:0002067;1.23e-10;9!UBERON:0000165;7.68e-10;28!UBERON:0001013;1.27e-09;14!UBERON:0002199;1.70e-09;46!UBERON:0002416;1.70e-09;46!UBERON:0003129;3.29e-09;7!UBERON:0002384;3.38e-09;198!UBERON:0003102;3.62e-09;50!UBERON:0002097;1.03e-08;41!UBERON:0011137;2.29e-07;11!UBERON:0010323;2.29e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,9.89e-19,99;UBERON:0002199,7.11e-15,46;UBERON:0002416,7.11e-15,46;UBERON:0002097,1.38e-11,41;UBERON:0001758,4.69e-11,6;UBERON:0003672,4.69e-11,6;UBERON:0000165,7.41e-11,29;UBERON:0000930,7.41e-11,29;UBERON:0002067,2.13e-10,9;UBERON:0004016,2.13e-10,9;UBERON:0010083,2.13e-10,9;UBERON:0001013,1.12e-09,14;UBERON:0003129,2.68e-09,7;UBERON:0002384,3.01e-08,371;UBERON:0001444,1.15e-07,49;UBERON:0010323,1.99e-07,11;UBERON:0000033,7.20e-07,56;UBERON:0011137,8.60e-07,14 | |||
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| |||
|short_description=p15@PRRX1 | |||
}} |
Revision as of 01:41, 12 September 2013
Short description: | p15@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_PRRX1_5end |
Coexpression cluster: | C929_myxofibrosarcoma_Fibroblast_normal_Olfactory_mesenchymal_dura_Preadipocyte |
Association with transcript: | 35bp_to_ENST00000367760_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.70e-28 | 76 |
skin fibroblast | 1.26e-12 | 23 |
fibroblast of periodontium | 4.69e-11 | 6 |
preadipocyte | 4.38e-09 | 12 |
fibroblast of gingiva | 4.60e-09 | 5 |
mesenchymal cell | 8.91e-08 | 354 |
connective tissue cell | 1.25e-07 | 361 |
multi fate stem cell | 1.28e-07 | 427 |
mesenchymal stem cell of adipose | 3.21e-07 | 8 |
somatic stem cell | 3.23e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
surface structure | 9.89e-19 | 99 |
integument | 7.11e-15 | 46 |
integumental system | 7.11e-15 | 46 |
skin of body | 1.38e-11 | 41 |
periodontium | 4.69e-11 | 6 |
dentition | 4.69e-11 | 6 |
mouth | 7.41e-11 | 29 |
stomodeum | 7.41e-11 | 29 |
dermis | 2.13e-10 | 9 |
dermatome | 2.13e-10 | 9 |
future dermis | 2.13e-10 | 9 |
adipose tissue | 1.12e-09 | 14 |
skull | 2.68e-09 | 7 |
connective tissue | 3.01e-08 | 371 |
subdivision of head | 1.15e-07 | 49 |
cranial skeletal system | 1.99e-07 | 11 |
head | 7.20e-07 | 56 |
axial skeletal system | 8.60e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.