FFCP PHASE1:Hg19::chr20:35580214..35580223,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25939|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15925|TSSclassifier=S|UniProt=Q9Y3Z3,Q59H15|association_with_transcript=22bp_to_ENST00000262878,NM_015474_5end|coexpression_cluster_id=C936|description=CAGE_peak_7_at_SAMHD1_5end|id=chr20:35580214..35580223,-|ontology_enrichment_celltype=CL:0002009!9.35e-30!65;CL:0002194!2.87e-29!63;CL:0000576!2.87e-29!63;CL:0000040!2.87e-29!63;CL:0000559!2.87e-29!63;CL:0000557!5.10e-29!71;CL:0000766!1.13e-27!76;CL:0000839!4.79e-26!70;CL:0002087!5.92e-26!119;CL:0000738!9.57e-26!140;CL:0002031!1.02e-23!124;CL:0002057!8.32e-23!42;CL:0000860!9.79e-21!45;CL:0000037!6.27e-20!172;CL:0000566!6.27e-20!172;CL:0000988!7.87e-18!182;CL:0002032!1.78e-17!165;CL:0000837!1.78e-17!165;CL:0000763!6.09e-17!112;CL:0000049!6.09e-17!112;CL:0000791!6.88e-10!18;CL:0000789!6.88e-10!18;CL:0002420!6.88e-10!18;CL:0002419!6.88e-10!18;CL:0000790!6.88e-10!18;CL:0000625!4.00e-07!11;CL:0002393!9.80e-07!9;CL:0002397!9.80e-07!9|ontology_enrichment_celltype_v019=CL:0000473;7.32e-25;39!CL:0000234;7.32e-25;39!CL:0000576;1.28e-24;48!CL:0000860;2.83e-21;33!CL:0002057;2.83e-21;33!CL:0000766;1.68e-17;69!CL:0000791;1.96e-17;18!CL:0000789;1.96e-17;18!CL:0002419;1.96e-17;18!CL:0002087;3.42e-12;104!CL:0000084;3.01e-11;25!CL:0000625;5.25e-11;11!CL:0000235;3.31e-10;6!CL:0000763;4.36e-10;100!CL:0000624;1.48e-09;6!CL:0000738;3.02e-09;136!CL:0002393;1.78e-08;6!CL:0002397;1.78e-08;6!CL:0000988;6.84e-07;177|ontology_enrichment_celltype_v019_2=CL:0002194,1.79e-51,59;CL:0000576,1.79e-51,59;CL:0000040,1.79e-51,59;CL:0000559,1.79e-51,59;CL:0002009,3.01e-49,61;CL:0002087,8.46e-49,115;CL:0000557,9.04e-46,67;CL:0000738,1.93e-45,136;CL:0000766,5.40e-45,72;CL:0000839,2.82e-44,66;CL:0000473,8.91e-43,48;CL:0000234,8.91e-43,48;CL:0002031,6.89e-41,120;CL:0000037,2.50e-40,168;CL:0000988,4.65e-38,177;CL:0002032,7.90e-35,161;CL:0000837,7.90e-35,161;CL:0000860,2.51e-34,42;CL:0002057,2.51e-34,42;CL:0000763,1.50e-31,108;CL:0000049,1.50e-31,108;CL:0000791,1.63e-17,18;CL:0000789,1.63e-17,18;CL:0002420,1.63e-17,18;CL:0002419,1.63e-17,18;CL:0000790,1.63e-17,18;CL:0002393,4.47e-12,9;CL:0002397,4.47e-12,9;CL:0000084,2.65e-11,25;CL:0000827,2.65e-11,25;CL:0000625,3.90e-11,11;CL:0000134,2.73e-10,354;CL:0000235,3.00e-10,6;CL:0002320,1.15e-09,361;CL:0000624,1.70e-09,6;CL:0000219,1.58e-07,386|ontology_enrichment_development_v019=CL:0002057;5.27e-23;42!CL:0000790;1.96e-17;18!CL:0000049;2.36e-09;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.53e-29!102;UBERON:0003061!1.53e-29!102;UBERON:0002193!2.48e-26!112;UBERON:0002371!5.31e-24!80;UBERON:0001474!9.07e-21!86;UBERON:0002405!1.11e-17!115;UBERON:0004765!6.29e-17!101;UBERON:0001434!6.29e-17!101;UBERON:0007023!2.82e-16!115;UBERON:0003081!9.89e-10!216;UBERON:0002204!3.78e-08!167|ontology_enrichment_uberon_v019=UBERON:0000178;2.70e-08;15!UBERON:0000179;2.70e-08;15!UBERON:0000463;2.70e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.50e-46,98;UBERON:0003061,2.50e-46,98;UBERON:0002193,6.82e-42,108;UBERON:0002371,4.54e-40,76;UBERON:0001474,6.66e-36,82;UBERON:0002405,3.01e-34,93;UBERON:0004765,3.16e-31,90;UBERON:0001434,1.85e-26,100;UBERON:0003081,3.93e-17,203;UBERON:0002204,3.07e-12,167;UBERON:0002384,2.70e-09,371;UBERON:0000926,1.05e-08,315;UBERON:0004120,1.05e-08,315;UBERON:0006603,1.05e-08,315;UBERON:0000178,3.24e-08,15;UBERON:0000179,3.24e-08,15;UBERON:0000463,3.24e-08,15|phase1_expression=2.18014055124668,0.428201047781966,1.40954404095971,3.00219895059391,0.893922188854576,0,0,1.26343974685366,1.82829939739887,0,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.136874425072884,0.125542639594803,0.229240217243854,0.164201178899891,0.0787107813136792,2.36018566109342,0.767658796194425,1.85779347979291,0,0,0,0.0774672005803016,0.142169232487422,1.76160263600908,1.66198622559563,1.40381113229099,2.38711957787437,1.56740831967947,0.647787332037959,1.80302897343931,0.872389432677388,0.755751887377619,1.21292030593908,0.697287110717054,0.822335776043652,1.54853185447552,4.60307827715441,4.61089271752381,3.78371567821736,1.72372840368309,1.93645405075148,0,0.941211697713023,0.545812300115692,1.12361742222542,1.83650335422542,1.60464513538047,3.19668562899521,9.23583640522805,5.18605509816243,8.52449501065388,2.03146467040009,1.70215567407342,1.24564449799115,3.51748131359441,4.69334626578181,3.69221035998698,5.44859552370032,3.68277635987565,3.79754864929061,5.49263744411049,4.03948169933583,3.56419697364239,6.17807471305723,3.60424542819615,8.51845609494525,3.13514018115373,1.79025009479181,4.38393969035121,0,0.546138611262131,0,0.426730222566507,0,0,0,0,0,0,0,0,0,2.63384084775077,4.32761494250433,2.75107533924415,4.11202997999018,3.00935691703221,8.47397893247335,8.04861269749047,11.6896037044747,2.00538822393312,3.24066498222321,4.43067789167242,2.97884250141517,2.17755243533648,2.34106825607781,2.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15925 | |||
|TSSclassifier=S | |||
|UniProt=Q9Y3Z3,Q59H15 | |||
|association_with_transcript=22bp_to_ENST00000262878,NM_015474_5end | |||
|coexpression_cluster_id=C936 | |||
|description=CAGE_peak_7_at_SAMHD1_5end | |||
|id=chr20:35580214..35580223,- | |||
|ontology_enrichment_celltype=CL:0002009!9.35e-30!65;CL:0002194!2.87e-29!63;CL:0000576!2.87e-29!63;CL:0000040!2.87e-29!63;CL:0000559!2.87e-29!63;CL:0000557!5.10e-29!71;CL:0000766!1.13e-27!76;CL:0000839!4.79e-26!70;CL:0002087!5.92e-26!119;CL:0000738!9.57e-26!140;CL:0002031!1.02e-23!124;CL:0002057!8.32e-23!42;CL:0000860!9.79e-21!45;CL:0000037!6.27e-20!172;CL:0000566!6.27e-20!172;CL:0000988!7.87e-18!182;CL:0002032!1.78e-17!165;CL:0000837!1.78e-17!165;CL:0000763!6.09e-17!112;CL:0000049!6.09e-17!112;CL:0000791!6.88e-10!18;CL:0000789!6.88e-10!18;CL:0002420!6.88e-10!18;CL:0002419!6.88e-10!18;CL:0000790!6.88e-10!18;CL:0000625!4.00e-07!11;CL:0002393!9.80e-07!9;CL:0002397!9.80e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;7.32e-25;39!CL:0000234;7.32e-25;39!CL:0000576;1.28e-24;48!CL:0000860;2.83e-21;33!CL:0002057;2.83e-21;33!CL:0000766;1.68e-17;69!CL:0000791;1.96e-17;18!CL:0000789;1.96e-17;18!CL:0002419;1.96e-17;18!CL:0002087;3.42e-12;104!CL:0000084;3.01e-11;25!CL:0000625;5.25e-11;11!CL:0000235;3.31e-10;6!CL:0000763;4.36e-10;100!CL:0000624;1.48e-09;6!CL:0000738;3.02e-09;136!CL:0002393;1.78e-08;6!CL:0002397;1.78e-08;6!CL:0000988;6.84e-07;177 | |||
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|ontology_enrichment_development_v019=CL:0002057;5.27e-23;42!CL:0000790;1.96e-17;18!CL:0000049;2.36e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.53e-29!102;UBERON:0003061!1.53e-29!102;UBERON:0002193!2.48e-26!112;UBERON:0002371!5.31e-24!80;UBERON:0001474!9.07e-21!86;UBERON:0002405!1.11e-17!115;UBERON:0004765!6.29e-17!101;UBERON:0001434!6.29e-17!101;UBERON:0007023!2.82e-16!115;UBERON:0003081!9.89e-10!216;UBERON:0002204!3.78e-08!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.70e-08;15!UBERON:0000179;2.70e-08;15!UBERON:0000463;2.70e-08;15 | |||
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| |||
|short_description=p7@SAMHD1 | |||
}} |
Revision as of 08:20, 12 September 2013
Short description: | p7@SAMHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SAMHD1_5end |
Coexpression cluster: | C936_CD4_CD14_granulocyte_CD14CD16_CD8_Dendritic_Hair |
Association with transcript: | 22bp_to_ENST00000262878, NM_015474_5end |
EntrezGene: | SAMHD1 |
HGNC: | 15925 |
UniProt: | Q9Y3Z3Q59H15 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.50e-46 | 98 |
blood island | 2.50e-46 | 98 |
hemolymphoid system | 6.82e-42 | 108 |
bone marrow | 4.54e-40 | 76 |
bone element | 6.66e-36 | 82 |
immune system | 3.01e-34 | 93 |
skeletal element | 3.16e-31 | 90 |
skeletal system | 1.85e-26 | 100 |
lateral plate mesoderm | 3.93e-17 | 203 |
musculoskeletal system | 3.07e-12 | 167 |
connective tissue | 2.70e-09 | 371 |
mesoderm | 1.05e-08 | 315 |
mesoderm-derived structure | 1.05e-08 | 315 |
presumptive mesoderm | 1.05e-08 | 315 |
blood | 3.24e-08 | 15 |
haemolymphatic fluid | 3.24e-08 | 15 |
organism substance | 3.24e-08 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.