FFCP PHASE1:Mm9::chr11:100025961..100025968,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=412|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:100025961..100025968,+|id=chr11:100025961..100025968,+|ontology_enrichment_celltype=CL:0002563!1.16e-19!9;CL:0002251!1.16e-19!9;CL:0002076!3.29e-19!15;CL:0000066!2.08e-16!25;CL:0000223!1.11e-13!20;CL:0000239!1.99e-13!6;CL:0000677!1.99e-13!6;CL:0000212!1.99e-13!6;CL:0000584!1.99e-13!6;CL:0000075!2.18e-11!7;CL:0002250!8.24e-08!3|ontology_enrichment_celltype_v019_2=CL:0002563,3.77e-21,9;CL:0002251,3.77e-21,9;CL:0000239,1.91e-14,6;CL:0000677,1.91e-14,6;CL:0000584,1.91e-14,6;CL:0002076,1.52e-12,15;CL:0000075,2.05e-12,7;CL:0000223,2.66e-09,20;CL:0002250,2.85e-08,3;CL:0000066,2.38e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.07e-31!43;UBERON:0000344!4.85e-31!15;UBERON:0005409!5.67e-29!59;UBERON:0001242!9.29e-28!13;UBERON:0000060!9.29e-28!13;UBERON:0001262!9.29e-28!13;UBERON:0004786!9.29e-28!13;UBERON:0003350!1.16e-19!9;UBERON:0004808!1.16e-19!9;UBERON:0001277!1.16e-19!9;UBERON:0004923!6.19e-18!24;UBERON:0000485!9.94e-16!11;UBERON:0001007!3.65e-15!128;UBERON:0001555!3.65e-15!128;UBERON:0007026!3.65e-15!128;UBERON:0004119!8.44e-15!130;UBERON:0000925!8.44e-15!130;UBERON:0006595!8.44e-15!130;UBERON:0004921!2.28e-13!126;UBERON:0004185!2.28e-13!126;UBERON:0000331!1.06e-07!3;UBERON:0002116!1.06e-07!3;UBERON:0001204!1.06e-07!3;UBERON:0001168!1.06e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.13e-41,31;UBERON:0001242,6.51e-32,13;UBERON:0001262,6.51e-32,13;UBERON:0004786,6.51e-32,13;UBERON:0005409,3.58e-30,47;UBERON:0000344,1.59e-27,15;UBERON:0003350,3.77e-21,9;UBERON:0004808,3.77e-21,9;UBERON:0001277,3.77e-21,9;UBERON:0002108,8.34e-21,4;UBERON:0000485,3.04e-17,11;UBERON:0004923,8.35e-17,24;UBERON:0000331,3.97e-16,3;UBERON:0002116,3.97e-16,3;UBERON:0001204,3.97e-16,3;UBERON:0001168,3.97e-16,3;UBERON:0004921,3.15e-11,114;UBERON:0001007,5.36e-11,116;UBERON:0001555,5.36e-11,116;UBERON:0007026,5.36e-11,116;UBERON:0004119,8.98e-11,118;UBERON:0000925,8.98e-11,118;UBERON:0006595,8.98e-11,118|phase1_expression=0,0.697950815278722,1.36499771816861,2.72217790176147,3.50627010962443,0.839396359559449,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799962113967033,0.22940928106717,0.57423196411502,0.430761996159075,0.861884930743556,1.52018735565099,1.76421090831952,2.43903561720835,0,0,0,2.3108129580102,0.997407872150954,6.53341940039581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78819938646014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,3.96675849995316,0,0,0.128867461322093,0.201683524623343,0.444756087689741,0.380451252225118,2.37264530772256,0.329397909448022,0.502670417600539,0,0.38992817423824,1.79763881730844,1.29682829924817,1.7922714592893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7488850197791,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0,0,0.41326727862668,1.04702376793612,0.90730481304255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr11:100025961..100025968,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=412 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:100025961..100025968,+ | |||
|id=chr11:100025961..100025968,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.16e-19!9;CL:0002251!1.16e-19!9;CL:0002076!3.29e-19!15;CL:0000066!2.08e-16!25;CL:0000223!1.11e-13!20;CL:0000239!1.99e-13!6;CL:0000677!1.99e-13!6;CL:0000212!1.99e-13!6;CL:0000584!1.99e-13!6;CL:0000075!2.18e-11!7;CL:0002250!8.24e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.77e-21,9;CL:0002251,3.77e-21,9;CL:0000239,1.91e-14,6;CL:0000677,1.91e-14,6;CL:0000584,1.91e-14,6;CL:0002076,1.52e-12,15;CL:0000075,2.05e-12,7;CL:0000223,2.66e-09,20;CL:0002250,2.85e-08,3;CL:0000066,2.38e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.07e-31!43;UBERON:0000344!4.85e-31!15;UBERON:0005409!5.67e-29!59;UBERON:0001242!9.29e-28!13;UBERON:0000060!9.29e-28!13;UBERON:0001262!9.29e-28!13;UBERON:0004786!9.29e-28!13;UBERON:0003350!1.16e-19!9;UBERON:0004808!1.16e-19!9;UBERON:0001277!1.16e-19!9;UBERON:0004923!6.19e-18!24;UBERON:0000485!9.94e-16!11;UBERON:0001007!3.65e-15!128;UBERON:0001555!3.65e-15!128;UBERON:0007026!3.65e-15!128;UBERON:0004119!8.44e-15!130;UBERON:0000925!8.44e-15!130;UBERON:0006595!8.44e-15!130;UBERON:0004921!2.28e-13!126;UBERON:0004185!2.28e-13!126;UBERON:0000331!1.06e-07!3;UBERON:0002116!1.06e-07!3;UBERON:0001204!1.06e-07!3;UBERON:0001168!1.06e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.13e-41,31;UBERON:0001242,6.51e-32,13;UBERON:0001262,6.51e-32,13;UBERON:0004786,6.51e-32,13;UBERON:0005409,3.58e-30,47;UBERON:0000344,1.59e-27,15;UBERON:0003350,3.77e-21,9;UBERON:0004808,3.77e-21,9;UBERON:0001277,3.77e-21,9;UBERON:0002108,8.34e-21,4;UBERON:0000485,3.04e-17,11;UBERON:0004923,8.35e-17,24;UBERON:0000331,3.97e-16,3;UBERON:0002116,3.97e-16,3;UBERON:0001204,3.97e-16,3;UBERON:0001168,3.97e-16,3;UBERON:0004921,3.15e-11,114;UBERON:0001007,5.36e-11,116;UBERON:0001555,5.36e-11,116;UBERON:0007026,5.36e-11,116;UBERON:0004119,8.98e-11,118;UBERON:0000925,8.98e-11,118;UBERON:0006595,8.98e-11,118 | |||
|phase1_expression=0,0.697950815278722,1.36499771816861,2.72217790176147,3.50627010962443,0.839396359559449,1.86890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799962113967033,0.22940928106717,0.57423196411502,0.430761996159075,0.861884930743556,1.52018735565099,1.76421090831952,2.43903561720835,0,0,0,2.3108129580102,0.997407872150954,6.53341940039581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0.649473123033642,0.760079596425296,0.505524445014783,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78819938646014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,3.96675849995316,0,0,0.128867461322093,0.201683524623343,0.444756087689741,0.380451252225118,2.37264530772256,0.329397909448022,0.502670417600539,0,0.38992817423824,1.79763881730844,1.29682829924817,1.7922714592893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7488850197791,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0,0,0.41326727862668,1.04702376793612,0.90730481304255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr11:100025961..100025968,+ | |||
}} |
Revision as of 18:09, 12 September 2013
Short description: | p@chr11:100025961..100025968, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:100025961..100025968, + |
Coexpression cluster: | MCL_coexpression_mm9:412 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.77e-21 | 9 |
epithelial cell of alimentary canal | 3.77e-21 | 9 |
brush border epithelial cell | 1.91e-14 | 6 |
gut absorptive cell | 1.91e-14 | 6 |
enterocyte | 1.91e-14 | 6 |
endo-epithelial cell | 1.52e-12 | 15 |
columnar/cuboidal epithelial cell | 2.05e-12 | 7 |
endodermal cell | 2.66e-09 | 20 |
intestinal crypt stem cell | 2.85e-08 | 3 |
epithelial cell | 2.38e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.13e-41 | 31 |
intestinal mucosa | 6.51e-32 | 13 |
wall of intestine | 6.51e-32 | 13 |
gastrointestinal system mucosa | 6.51e-32 | 13 |
gastrointestinal system | 3.58e-30 | 47 |
mucosa | 1.59e-27 | 15 |
epithelium of mucosa | 3.77e-21 | 9 |
gastrointestinal system epithelium | 3.77e-21 | 9 |
intestinal epithelium | 3.77e-21 | 9 |
small intestine | 8.34e-21 | 4 |
simple columnar epithelium | 3.04e-17 | 11 |
organ component layer | 8.35e-17 | 24 |
ileal mucosa | 3.97e-16 | 3 |
ileum | 3.97e-16 | 3 |
mucosa of small intestine | 3.97e-16 | 3 |
wall of small intestine | 3.97e-16 | 3 |
subdivision of digestive tract | 3.15e-11 | 114 |
digestive system | 5.36e-11 | 116 |
digestive tract | 5.36e-11 | 116 |
primitive gut | 5.36e-11 | 116 |
endoderm-derived structure | 8.98e-11 | 118 |
endoderm | 8.98e-11 | 118 |
presumptive endoderm | 8.98e-11 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.