FFCP PHASE1:Hg19::chr3:122399656..122399694,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54625|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29232|TSSclassifier=S|UniProt=E9PGX7,Q460N5,C9J8I1,Q8N546|association_with_transcript=0bp_to_ENST00000310290,ENST00000398162,NM_017554,uc003efq.3_5end|coexpression_cluster_id=C413|description=CAGE_peak_1_at_PARP14_5end|id=chr3:122399656..122399694,+|ontology_enrichment_celltype=CL:0000738!1.21e-30!140;CL:0000766!1.25e-30!76;CL:0002031!1.84e-28!124;CL:0002087!2.63e-28!119;CL:0000557!3.67e-27!71;CL:0000839!3.68e-27!70;CL:0000037!8.04e-27!172;CL:0000566!8.04e-27!172;CL:0002194!1.87e-26!63;CL:0000576!1.87e-26!63;CL:0000040!1.87e-26!63;CL:0000559!1.87e-26!63;CL:0002032!3.62e-26!165;CL:0000837!3.62e-26!165;CL:0002009!6.13e-26!65;CL:0000988!4.84e-23!182;CL:0002057!8.69e-23!42;CL:0000763!2.69e-22!112;CL:0000049!2.69e-22!112;CL:0000860!2.28e-21!45;CL:0000134!9.42e-07!358|ontology_enrichment_celltype_v019=CL:0000860;1.18e-18;33!CL:0002057;1.18e-18;33!CL:0000473;2.14e-18;39!CL:0000234;2.14e-18;39!CL:0000576;4.47e-16;48!CL:0000766;4.09e-14;69!CL:0002087;1.72e-09;104!CL:0000763;7.45e-08;100!CL:0000738;1.54e-07;136|ontology_enrichment_celltype_v019_2=CL:0000766,4.28e-32,72;CL:0000738,2.00e-31,136;CL:0002031,2.17e-29,120;CL:0002087,2.87e-29,115;CL:0000839,1.46e-28,66;CL:0000557,1.53e-28,67;CL:0002194,5.55e-28,59;CL:0000576,5.55e-28,59;CL:0000040,5.55e-28,59;CL:0000559,5.55e-28,59;CL:0002009,2.21e-27,61;CL:0000037,2.37e-27,168;CL:0002032,8.50e-27,161;CL:0000837,8.50e-27,161;CL:0000473,4.12e-26,48;CL:0000234,4.12e-26,48;CL:0000988,9.36e-24,177;CL:0000763,5.86e-23,108;CL:0000049,5.86e-23,108;CL:0000860,6.78e-23,42;CL:0002057,6.78e-23,42;CL:0000134,6.35e-07,354|ontology_enrichment_development_v019=CL:0002057;7.90e-17;42!CL:0000049;4.26e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!6.01e-30!112;UBERON:0002390!3.69e-29!102;UBERON:0003061!3.69e-29!102;UBERON:0002371!2.22e-23!80;UBERON:0002405!9.71e-23!115;UBERON:0001474!2.66e-22!86;UBERON:0004765!7.00e-21!101;UBERON:0001434!7.00e-21!101;UBERON:0002204!1.22e-08!167;UBERON:0003081!1.27e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.90e-31,108;UBERON:0002390,2.57e-30,98;UBERON:0003061,2.57e-30,98;UBERON:0002405,2.61e-27,93;UBERON:0002371,1.48e-24,76;UBERON:0001474,2.42e-23,82;UBERON:0004765,2.21e-22,90;UBERON:0001434,7.15e-21,100;UBERON:0003081,1.62e-08,203;UBERON:0002204,2.01e-08,167|phase1_expression=0.363356758541113,0.428201047781966,0.422863212287913,1.0007329835313,0.446961094427288,0,2.53299878168311,0.631719873426831,0.522371256399677,0,0.697801167972428,0.436882744260345,0.791300934685361,2.84662611808107,5.30235801164665,5.3786011716142,3.01347264011988,1.46062018077475,2.92759679274304,1.35433163884467,0.816002764977012,1.25381888591235,4.86601178122796,2.87436292653057,3.51519390865448,8.17623441503079,6.07544361929599,6.84783797429009,6.68719270643137,10.747223146722,9.28896739896456,0.919421224478927,0.6024118375565,0.369754010166788,0,0,5.87200878669694,24.9297933839345,8.02177789880567,13.237663113667,12.9870975059156,15.87078963493,19.318167572564,13.2312397289404,10.5805264232867,13.3421233653299,10.4593066607558,12.7462045286766,11.1494293522237,37.4000110018796,35.8624989140741,46.3505170581627,16.5477926753577,12.9096936716765,21.6682378550947,8.84738995850242,8.46009065179322,13.25868558226,31.2205570218321,23.1068899494787,35.1635419189473,35.2940891199786,29.7200849856231,40.9175760511386,49.3355705668593,32.9083430320861,38.6149794377257,34.4210671401738,31.8104580236323,34.5330263081135,45.4049626975027,42.3519281385699,64.5583270379404,6.97142444829408,5.74031609905618,9.01532175686016,8.31231870484064,8.86043667764887,12.2151445889781,6.27028036230747,6.36533367037088,8.76787938070243,7.03984977845291,6.55366333514558,4.44754626931777,10.2415253415962,6.00593980554019,6.32227683949932,5.2883589822789,4.77026877267682,8.53819453664173,7.04684627245127,9.93910393125595,5.28685314316103,10.6496626966492,4.47752944117631,10.0321982758055,2.75107533924415,4.5232329779892,13.2077331358636,3.2592226663359,3.31413464014313,0,9.80412020589528,6.77593587192126,4.87374568083967,7.58250818542044,9.60684897942564,11.9654599755088,9.53739846701322,6.35605040907451,8.11448640058147,3.70716407905151,8.56130649887082,8.36284190439814,12.1240996686396,9.58051234004803,4.12352934579156,9.61474829674111,5.73417745783374,3.90650072313851,5.70271226669025,6.32415500126646,7.80718328041952,6.24653632761729,5.6826540490564,9.03240796613151,8.26587647221403,2.40696176205157,7.09639579025715,2.43806866313962,3.35350429851818,1.53435074212236,2.1686349143074,2.00535164254356,0.869079113764942,0.795285947051099,2.91980922181582,7.75185500745356,3.54767035940102,5.53359149866694,3.27447688744282,0.728590576585084,1.11235332835329,13.6309905334967,15.8458060942333,11.5673425651413,1.19245312152671,6.29194401858141,1.857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2.66967466827017,4.8325194824207,3.1826595538604,5.64077462619429,2.82387096184928,3.12605604493237,0,4.58561369028271,16.7077377425261,1.95858995393344,0.781078098613847,2.27355476151302,1.8390584956233,0,1.09651553371436,5.45832296228224,0.527613733078862,13.9261046127159,2.67850917939143,2.69026977775059,2.42786241694653,3.41493287026946,9.31374886707708,6.6835712782352,8.74588848130834,2.17503145525861,0.328863867814245,1.65471377237555,4.56048747757483,7.22136454224729,2.04250266890802,17.9374184520825,11.8710633666234,9.50081401361934,20.0655708912561,3.50235066465616,0,6.04455411914251,1.21700790611806,8.81882501203278,2.27937780579341,1.3657478167516,5.53007729451273,3.01159151174194,3.78662402337809,4.00503002368041,1.69354820076372,6.4149923192334,2.48165108531456,0.955538938977433,2.79638579494481,5.59456331606885,7.43699342391843,2.58971534875158,2.36124455769368,2.3196288626764,3.88568794447312,0,0,1.30812099855325,0.22589216407792,0.109940516745429,9.81258483183378,12.1935169810553,8.52382285965433,0.940634592723046,4.16752146981639,0,2.55201007249429,2.97046400327086,2.9585900930838,1.18948980281472,9.96229530586448,7.67048866885568,8.2951159417691,14.4628690270583,2.47026410200984,4.33303380121509,6.57302749421866,2.2936464170227,2.86679166302903,0.946629373159108,0.951880862672806,0,4.7612415646386,1.48798007266701,4.15958065768276,2.59575937274273,1.64016352285603,0,0,1.73381010561369,0,0,0.752122617877125,3.33426272160253,0.535928260312357,4.1458471972939,2.27552590896169,4.69114760182158,4.76128862927481,7.62149136064872,8.13178757275739,6.50364802967558,6.49201014437282,3.84022659020617,3.48346796635138,1.36893320434112,6.93726146050251,8.75010905790652,4.65724499164419,5.20980919110237,19.7445589873774,1.9307228228694,9.52147142329821,2.34640942403454,6.11207220914332,3.66206560484165,6.65756774185513,6.03821380773079,8.33478079988406|short_description=p1@PARP14}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=54625 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29232 | |||
|TSSclassifier=S | |||
|UniProt=E9PGX7,Q460N5,C9J8I1,Q8N546 | |||
|association_with_transcript=0bp_to_ENST00000310290,ENST00000398162,NM_017554,uc003efq.3_5end | |||
|coexpression_cluster_id=C413 | |||
|description=CAGE_peak_1_at_PARP14_5end | |||
|id=chr3:122399656..122399694,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.21e-30!140;CL:0000766!1.25e-30!76;CL:0002031!1.84e-28!124;CL:0002087!2.63e-28!119;CL:0000557!3.67e-27!71;CL:0000839!3.68e-27!70;CL:0000037!8.04e-27!172;CL:0000566!8.04e-27!172;CL:0002194!1.87e-26!63;CL:0000576!1.87e-26!63;CL:0000040!1.87e-26!63;CL:0000559!1.87e-26!63;CL:0002032!3.62e-26!165;CL:0000837!3.62e-26!165;CL:0002009!6.13e-26!65;CL:0000988!4.84e-23!182;CL:0002057!8.69e-23!42;CL:0000763!2.69e-22!112;CL:0000049!2.69e-22!112;CL:0000860!2.28e-21!45;CL:0000134!9.42e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.18e-18;33!CL:0002057;1.18e-18;33!CL:0000473;2.14e-18;39!CL:0000234;2.14e-18;39!CL:0000576;4.47e-16;48!CL:0000766;4.09e-14;69!CL:0002087;1.72e-09;104!CL:0000763;7.45e-08;100!CL:0000738;1.54e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.28e-32,72;CL:0000738,2.00e-31,136;CL:0002031,2.17e-29,120;CL:0002087,2.87e-29,115;CL:0000839,1.46e-28,66;CL:0000557,1.53e-28,67;CL:0002194,5.55e-28,59;CL:0000576,5.55e-28,59;CL:0000040,5.55e-28,59;CL:0000559,5.55e-28,59;CL:0002009,2.21e-27,61;CL:0000037,2.37e-27,168;CL:0002032,8.50e-27,161;CL:0000837,8.50e-27,161;CL:0000473,4.12e-26,48;CL:0000234,4.12e-26,48;CL:0000988,9.36e-24,177;CL:0000763,5.86e-23,108;CL:0000049,5.86e-23,108;CL:0000860,6.78e-23,42;CL:0002057,6.78e-23,42;CL:0000134,6.35e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;7.90e-17;42!CL:0000049;4.26e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.01e-30!112;UBERON:0002390!3.69e-29!102;UBERON:0003061!3.69e-29!102;UBERON:0002371!2.22e-23!80;UBERON:0002405!9.71e-23!115;UBERON:0001474!2.66e-22!86;UBERON:0004765!7.00e-21!101;UBERON:0001434!7.00e-21!101;UBERON:0002204!1.22e-08!167;UBERON:0003081!1.27e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.90e-31,108;UBERON:0002390,2.57e-30,98;UBERON:0003061,2.57e-30,98;UBERON:0002405,2.61e-27,93;UBERON:0002371,1.48e-24,76;UBERON:0001474,2.42e-23,82;UBERON:0004765,2.21e-22,90;UBERON:0001434,7.15e-21,100;UBERON:0003081,1.62e-08,203;UBERON:0002204,2.01e-08,167 | |||
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| |||
|short_description=p1@PARP14 | |||
}} |
Revision as of 21:10, 12 September 2013
Short description: | p1@PARP14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PARP14_5end |
Coexpression cluster: | C413_CD14_Smooth_gall_mesothelioma_meningioma_Fibroblast_Neutrophils |
Association with transcript: | 0bp_to_ENST00000310290, ENST00000398162, NM_017554, uc003efq.3_5end |
EntrezGene: | PARP14 |
HGNC: | 29232 |
UniProt: | E9PGX7Q460N5C9J8I1Q8N546 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.28e-32 | 72 |
leukocyte | 2.00e-31 | 136 |
hematopoietic lineage restricted progenitor cell | 2.17e-29 | 120 |
nongranular leukocyte | 2.87e-29 | 115 |
myeloid lineage restricted progenitor cell | 1.46e-28 | 66 |
granulocyte monocyte progenitor cell | 1.53e-28 | 67 |
monopoietic cell | 5.55e-28 | 59 |
monocyte | 5.55e-28 | 59 |
monoblast | 5.55e-28 | 59 |
promonocyte | 5.55e-28 | 59 |
macrophage dendritic cell progenitor | 2.21e-27 | 61 |
hematopoietic stem cell | 2.37e-27 | 168 |
hematopoietic oligopotent progenitor cell | 8.50e-27 | 161 |
hematopoietic multipotent progenitor cell | 8.50e-27 | 161 |
defensive cell | 4.12e-26 | 48 |
phagocyte | 4.12e-26 | 48 |
hematopoietic cell | 9.36e-24 | 177 |
myeloid cell | 5.86e-23 | 108 |
common myeloid progenitor | 5.86e-23 | 108 |
classical monocyte | 6.78e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.78e-23 | 42 |
mesenchymal cell | 6.35e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.90e-31 | 108 |
hematopoietic system | 2.57e-30 | 98 |
blood island | 2.57e-30 | 98 |
immune system | 2.61e-27 | 93 |
bone marrow | 1.48e-24 | 76 |
bone element | 2.42e-23 | 82 |
skeletal element | 2.21e-22 | 90 |
skeletal system | 7.15e-21 | 100 |
lateral plate mesoderm | 1.62e-08 | 203 |
musculoskeletal system | 2.01e-08 | 167 |
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