FFCP PHASE1:Hg19::chr4:110481490..110481492,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55013|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26076|TSSclassifier=S|UniProt=|association_with_transcript=122bp_to_ENST00000515114_5end|description=CAGE_peak_6_at_CCDC109B_5end|id=chr4:110481490..110481492,+|ontology_enrichment_celltype=CL:0002087!4.16e-16!119;CL:0002031!3.00e-13!124;CL:0000738!3.20e-13!140;CL:0000791!2.62e-12!18;CL:0000789!2.62e-12!18;CL:0002420!2.62e-12!18;CL:0002419!2.62e-12!18;CL:0000790!2.62e-12!18;CL:0000084!7.35e-12!25;CL:0000827!7.35e-12!25;CL:0002057!1.34e-11!42;CL:0000860!2.22e-11!45;CL:0000838!4.53e-09!52;CL:0000542!5.49e-09!53;CL:0000051!5.49e-09!53;CL:0000625!6.20e-09!11;CL:0000037!3.44e-08!172;CL:0000566!3.44e-08!172;CL:0000988!4.42e-08!182;CL:0000034!2.12e-07!444;CL:0000723!3.20e-07!436;CL:0000048!3.97e-07!430|ontology_enrichment_celltype_v019=CL:0000791;5.33e-34;18!CL:0000789;5.33e-34;18!CL:0002419;5.33e-34;18!CL:0000084;2.74e-30;25!CL:0000625;2.91e-25;11!CL:0000624;1.26e-12;6!CL:0000542;1.45e-11;53!CL:0000226;3.61e-09;3!CL:0000842;3.61e-09;3!CL:0000860;4.24e-09;33!CL:0002057;4.24e-09;33!CL:0000784;8.79e-09;3!CL:0002087;4.13e-07;104!CL:0000738;9.90e-07;136|ontology_enrichment_celltype_v019_2=CL:0000791,1.23e-34,18;CL:0000789,1.23e-34,18;CL:0002420,1.23e-34,18;CL:0002419,1.23e-34,18;CL:0000790,1.23e-34,18;CL:0000084,1.23e-30,25;CL:0000827,1.23e-30,25;CL:0002087,2.29e-27,115;CL:0000738,5.88e-26,136;CL:0000625,1.14e-25,11;CL:0002031,4.57e-21,120;CL:0000838,2.17e-19,52;CL:0000037,5.82e-19,168;CL:0000542,6.46e-19,53;CL:0000051,6.46e-19,53;CL:0000988,1.64e-18,177;CL:0002032,2.28e-13,161;CL:0000837,2.28e-13,161;CL:0000624,6.86e-13,6;CL:0000226,1.47e-09,3;CL:0000842,1.47e-09,3;CL:0000860,1.62e-09,42;CL:0002057,1.62e-09,42;CL:0000784,6.06e-09,3;CL:0000473,6.09e-08,48;CL:0000234,6.09e-08,48;CL:0002194,8.72e-07,59;CL:0000576,8.72e-07,59;CL:0000040,8.72e-07,59;CL:0000559,8.72e-07,59|ontology_enrichment_development_v019=CL:0000790;5.33e-34;18!CL:0000051;1.45e-11;53!CL:0002057;3.78e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!4.73e-09!112;UBERON:0002390!1.69e-07!102;UBERON:0003061!1.69e-07!102|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.20e-08,108;UBERON:0002390,3.32e-07,98;UBERON:0003061,3.32e-07,98|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0.261185628199839,0,0,0.436882744260345,0.263766978228454,0,0,0.672325146451775,1.20538905604795,0,0.487932798790507,0,0.408001382488506,0,0.286235987131057,0.273748850145768,0.376627918784408,0,0.0821005894499457,0.0787107813136792,0,0.383829398097213,0.619264493264304,0.919421224478927,0.30120591877825,0.369754010166788,1.16200800870452,0.426507697462265,0.880801318004542,2.76997704265939,1.20326668482085,0.217010870715852,0.223915474239924,0,0,1.16318591023652,0.377875943688809,1.21292030593908,0.697287110717054,1.23350366406548,1.23882548358041,0.575384784644301,0.768482119587302,0.945928919554341,0.689491361473237,0.645484683583826,0,1.31769637679823,2.18324920046277,1.34834090667051,0.612167784741805,0.962787081228281,0.639337125799041,0.659702600373432,0.398927315243264,2.55734850319616,0.580418477257168,1.13477044938228,0.622822248995575,0.75374599577023,1.5644487552606,1.08594422352558,0,1.10483290796269,0,0,0.425208599930087,0.838634582033504,0.673971786878971,0.300353785683013,0.64290234678832,0,0.19891667719909,0.365328307529268,0,1.09227722252426,0,0,0.800791974072025,0.574752439954483,0.661044872784862,0,0.569212969109448,0.587237189370939,0,1.32171328579026,1.68152568894461,0.526768169550154,2.55722701147983,2.75107533924415,2.05601498999509,0.83593247695339,1.95553359980154,3.78758244587787,0,0.891283655081389,0.589211814949674,0.886135578334485,0.270803863765016,0.768547918354051,0.780356085359269,1.15106533222573,1.65810010671509,0.579606171470105,4.15202376853769,3.47803076516627,6.27213142829861,1.24640276967323,4.21542542962113,1.37450978193052,3.03623630423403,3.50421955756506,1.30216690771284,0.950452044448374,2.40920190524436,1.53583933385302,3.74792179657038,2.13099526839615,4.92676798152628,1.41124720257313,1.60464117470104,2.60683926989038,0,0,0.511450247374121,0.722878304769133,0,0.579386075843295,0,0.973269740605272,0.0945348171640679,0,0.263504357079378,0,0,0.370784442784429,0,0,0.132957960518865,1.66943437013739,1.14398982156026,1.48583000531826,0.198762407366705,0.860234595106124,0.694281003215189,0.56530794192401,1.25849830862972,0,0.208994966536811,0.775250277507987,1.77883131343355,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0,0.267899184852239,0.22452937262617,0.450445921933289,0,0,0.366403487860815,0,0,0,0.993943903390637,0.633152558322899,0.132409180813219,0,0.354668382198357,0.560677600142307,2.1349799145941,0.49333509683432,0,0.67355336034844,0.653847612453835,0.151357427644931,0,0.234321431833797,0,0,0,0.704606991862589,0.323745888736263,1.12360645361799,0.204154171254893,0.737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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55013 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26076 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=122bp_to_ENST00000515114_5end | |||
|description=CAGE_peak_6_at_CCDC109B_5end | |||
|id=chr4:110481490..110481492,+ | |||
|ontology_enrichment_celltype=CL:0002087!4.16e-16!119;CL:0002031!3.00e-13!124;CL:0000738!3.20e-13!140;CL:0000791!2.62e-12!18;CL:0000789!2.62e-12!18;CL:0002420!2.62e-12!18;CL:0002419!2.62e-12!18;CL:0000790!2.62e-12!18;CL:0000084!7.35e-12!25;CL:0000827!7.35e-12!25;CL:0002057!1.34e-11!42;CL:0000860!2.22e-11!45;CL:0000838!4.53e-09!52;CL:0000542!5.49e-09!53;CL:0000051!5.49e-09!53;CL:0000625!6.20e-09!11;CL:0000037!3.44e-08!172;CL:0000566!3.44e-08!172;CL:0000988!4.42e-08!182;CL:0000034!2.12e-07!444;CL:0000723!3.20e-07!436;CL:0000048!3.97e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.33e-34;18!CL:0000789;5.33e-34;18!CL:0002419;5.33e-34;18!CL:0000084;2.74e-30;25!CL:0000625;2.91e-25;11!CL:0000624;1.26e-12;6!CL:0000542;1.45e-11;53!CL:0000226;3.61e-09;3!CL:0000842;3.61e-09;3!CL:0000860;4.24e-09;33!CL:0002057;4.24e-09;33!CL:0000784;8.79e-09;3!CL:0002087;4.13e-07;104!CL:0000738;9.90e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.23e-34,18;CL:0000789,1.23e-34,18;CL:0002420,1.23e-34,18;CL:0002419,1.23e-34,18;CL:0000790,1.23e-34,18;CL:0000084,1.23e-30,25;CL:0000827,1.23e-30,25;CL:0002087,2.29e-27,115;CL:0000738,5.88e-26,136;CL:0000625,1.14e-25,11;CL:0002031,4.57e-21,120;CL:0000838,2.17e-19,52;CL:0000037,5.82e-19,168;CL:0000542,6.46e-19,53;CL:0000051,6.46e-19,53;CL:0000988,1.64e-18,177;CL:0002032,2.28e-13,161;CL:0000837,2.28e-13,161;CL:0000624,6.86e-13,6;CL:0000226,1.47e-09,3;CL:0000842,1.47e-09,3;CL:0000860,1.62e-09,42;CL:0002057,1.62e-09,42;CL:0000784,6.06e-09,3;CL:0000473,6.09e-08,48;CL:0000234,6.09e-08,48;CL:0002194,8.72e-07,59;CL:0000576,8.72e-07,59;CL:0000040,8.72e-07,59;CL:0000559,8.72e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000790;5.33e-34;18!CL:0000051;1.45e-11;53!CL:0002057;3.78e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.73e-09!112;UBERON:0002390!1.69e-07!102;UBERON:0003061!1.69e-07!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,9.20e-08,108;UBERON:0002390,3.32e-07,98;UBERON:0003061,3.32e-07,98 | |||
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| |||
|short_description=p6@CCDC109B | |||
}} |
Revision as of 02:01, 13 September 2013
Short description: | p6@CCDC109B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_CCDC109B_5end |
Coexpression cluster: | NA |
Association with transcript: | 122bp_to_ENST00000515114_5end |
EntrezGene: | CCDC109B |
HGNC: | 26076 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.23e-34 | 18 |
alpha-beta T cell | 1.23e-34 | 18 |
immature T cell | 1.23e-34 | 18 |
mature T cell | 1.23e-34 | 18 |
immature alpha-beta T cell | 1.23e-34 | 18 |
T cell | 1.23e-30 | 25 |
pro-T cell | 1.23e-30 | 25 |
nongranular leukocyte | 2.29e-27 | 115 |
leukocyte | 5.88e-26 | 136 |
CD8-positive, alpha-beta T cell | 1.14e-25 | 11 |
hematopoietic lineage restricted progenitor cell | 4.57e-21 | 120 |
lymphoid lineage restricted progenitor cell | 2.17e-19 | 52 |
hematopoietic stem cell | 5.82e-19 | 168 |
lymphocyte | 6.46e-19 | 53 |
common lymphoid progenitor | 6.46e-19 | 53 |
hematopoietic cell | 1.64e-18 | 177 |
hematopoietic oligopotent progenitor cell | 2.28e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.28e-13 | 161 |
CD4-positive, alpha-beta T cell | 6.86e-13 | 6 |
single nucleate cell | 1.47e-09 | 3 |
mononuclear cell | 1.47e-09 | 3 |
classical monocyte | 1.62e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.62e-09 | 42 |
plasmacytoid dendritic cell | 6.06e-09 | 3 |
defensive cell | 6.09e-08 | 48 |
phagocyte | 6.09e-08 | 48 |
monopoietic cell | 8.72e-07 | 59 |
monocyte | 8.72e-07 | 59 |
monoblast | 8.72e-07 | 59 |
promonocyte | 8.72e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 9.20e-08 | 108 |
hematopoietic system | 3.32e-07 | 98 |
blood island | 3.32e-07 | 98 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.