FFCP PHASE1:Hg19::chr5:133561752..133561791,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5515,6500|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9299,10899|TSSclassifier=S|UniProt=E5RI56|association_with_transcript=0bp_to_ENST00000231504,ENST00000519718_5end|coexpression_cluster_id=C1210|description=CAGE_peak_1_at_PPP2CA_5end,CAGE_peak_2_at_SKP1_5end|id=chr5:133561752..133561791,-|ontology_enrichment_celltype=CL:0000738!7.17e-38!140;CL:0000037!1.88e-32!172;CL:0000566!1.88e-32!172;CL:0002031!2.52e-30!124;CL:0002032!5.68e-30!165;CL:0000837!5.68e-30!165;CL:0000988!1.48e-29!182;CL:0002087!2.30e-28!119;CL:0000766!1.18e-25!76;CL:0002057!3.88e-25!42;CL:0000860!7.74e-25!45;CL:0000557!1.70e-22!71;CL:0000839!1.77e-21!70;CL:0000763!3.35e-21!112;CL:0000049!3.35e-21!112;CL:0002009!6.24e-21!65;CL:0002194!5.11e-20!63;CL:0000576!5.11e-20!63;CL:0000040!5.11e-20!63;CL:0000559!5.11e-20!63;CL:0000838!1.38e-08!52;CL:0000542!2.90e-08!53;CL:0000051!2.90e-08!53;CL:0000134!8.21e-07!358|ontology_enrichment_celltype_v019=CL:0000860;2.31e-19;33!CL:0002057;2.31e-19;33!CL:0000576;2.69e-15;48!CL:0000473;1.10e-12;39!CL:0000234;1.10e-12;39!CL:0000766;2.38e-12;69!CL:0002087;2.11e-09;104!CL:0000738;4.54e-09;136|ontology_enrichment_celltype_v019_2=CL:0000738,1.53e-38,136;CL:0000037,7.55e-33,168;CL:0002031,6.10e-31,120;CL:0000988,1.24e-30,177;CL:0002032,2.34e-30,161;CL:0000837,2.34e-30,161;CL:0002087,5.74e-29,115;CL:0000766,1.23e-26,72;CL:0000860,3.88e-25,42;CL:0002057,3.88e-25,42;CL:0000557,2.07e-23,67;CL:0000839,2.32e-22,66;CL:0002009,7.15e-22,61;CL:0000763,1.16e-21,108;CL:0000049,1.16e-21,108;CL:0002194,6.03e-21,59;CL:0000576,6.03e-21,59;CL:0000040,6.03e-21,59;CL:0000559,6.03e-21,59;CL:0000473,2.08e-20,48;CL:0000234,2.08e-20,48;CL:0000838,1.38e-08,52;CL:0000542,2.90e-08,53;CL:0000051,2.90e-08,53;CL:0000134,8.38e-07,354|ontology_enrichment_development_v019=CL:0002057;2.43e-18;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!7.17e-19!102;UBERON:0003061!7.17e-19!102;UBERON:0002371!7.84e-18!80;UBERON:0001474!3.72e-16!86;UBERON:0002193!1.33e-14!112;UBERON:0004765!3.53e-14!101;UBERON:0001434!3.53e-14!101;UBERON:0002405!1.36e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.52e-19,98;UBERON:0003061,2.52e-19,98;UBERON:0002371,2.01e-18,76;UBERON:0004765,1.11e-16,90;UBERON:0001474,1.25e-16,82;UBERON:0002193,6.93e-15,108;UBERON:0001434,4.06e-14,100;UBERON:0002405,1.08e-13,93|phase1_expression=93.019330186525,86.7107121758482,100.218581312235,64.0469109460035,75.0894638637843,96.8295761751409,65.8579683237607,90.3359419000368,57.7220238321643,60.4505483793712,32.0988537267317,58.9791704751465,40.0925806907249,116.216605429484,90.471483573721,67.2325146451775,75.3368160029971,75.2219393098994,78.0692478064811,56.3894445991689,38.7601313364081,25.7032871612032,123.081474466354,122.091987165013,119.642135533847,108.812689785083,115.843931713873,114.209343686149,252.146501460147,265.226114085174,177.109645073591,90.1032799989349,71.3858027504453,80.9761282265265,121.855906512814,83.4533394701164,134.175400776025,251.513915473472,248.875659310446,205.292283697196,100.985878882206,109.152165448396,97.3635645657225,151.941159524645,188.560095900716,154.768631037827,230.104746536628,273.015477646492,282.452210256334,284.527776006607,286.643830606064,406.749435408367,340.263986887043,359.534968756191,369.714308402553,214.031540059942,249.163315002813,288.320230543044,314.348157464917,453.151786231444,359.94680182486,219.351114624166,225.593396770066,251.046378063757,325.324556502643,411.354287901076,376.807460642323,262.052357862783,282.643741783749,356.189705316391,287.56476375085,545.419178897583,489.883775758489,187.17218367238,154.563326074587,164.372378078567,160.405285277195,163.993166982925,190.45982023604,130.820849377233,145.209174355336,162.753761004289,146.076882902898,126.158019201552,129.868351064079,116.924080983223,126.925527890416,117.249497750715,117.665987355705,122.118880580527,181.578937145914,207.294727847941,196.870712484493,227.334685155924,263.439024601322,120.36652674221,170.744080458807,168.208606456643,172.499657660588,111.513392425582,121.569005454329,107.472651901784,126.637373465142,126.450868564672,142.883865125296,155.295260103118,168.44000326184,95.9403984745307,104.437656090582,81.8900764926307,80.6942051934677,121.717296008722,119.518969908621,117.717964359474,88.8551952342303,108.890278332361,131.827849799061,124.393135264712,152.064834903721,129.337558215583,108.730936794022,106.450628978218,133.258980383829,123.891039597477,129.92795561444,110.8117539566,149.44529543963,168.341630592652,167.417562560476,135.265993226534,143.846051125237,112.007043570507,110.601115994654,92.1669838580644,87.2327964506448,89.0806091609066,120.883463951767,83.7011976920534,112.590967242405,101.552064037854,101.361342689867,88.7383236497003,36.7938241175468,47.0896242336225,126.898030918981,127.462967703064,99.58551242863,151.203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74.5629098519955,121.415412700478,113.218061326001,122.906490822809,110.412606870202,108.041702055001,115.543797207151,52.1078866958857,71.4251731541654,75.6008161979913,110.611693758702,76.6390485074739,117.898308776874,93.6667775494,80.7627911051666,108.410898983033,152.737097279381,151.615336668376,83.328874427833,162.041927750196,101.836965273574,152.97584245085,144.036275903611,118.498618815098,77.8311407713133,94.3757786781923,134.453162716391,186.111848168195,116.321539117486,121.503346986578,78.7708239580448,87.695242855234,56.8808293743927,57.0505228200158,126.762840129008,112.838851164457,98.3242973343351,179.514899915693,124.972495778216,115.744606040663,159.934673309033,111.582861039717,58.6635810537185,78.8975773638978,75.8005063189965,99.7824559865239,102.319050652753,111.982479498868,75.2637349253423,80.1370913556568,147.689446320794,125.950748398467,117.126310445757,175.497850546179,159.827839757723,132.731683312696,68.1848493598384,90.2670567780911,126.478049882382,91.9292695669228,71.2263801997407,123.510582177051,62.5854711132036,76.7658084457289,100.022616226816,110.894319801191,106.922837466086,100.213920591282,95.9410840074861,106.699048183719,103.688949272114,83.4641076111339,132.531840818233,163.86537735186,70.7056373818852,86.6023963096509,133.078539449993,109.886977982405,97.8735028230683,161.849735231536,120.454909882482,124.953765577264,109.438552108759,49.8720205475426,77.7137588894623,85.1539647002064,50.5334968909875,128.671538221329,154.623186311336,72.7806220854741,83.7843781795038,95.4644335795275,76.714405736889,86.0680652341587,78.9377596047576,109.353917855154,85.5904916621161,93.5696161030321,132.291242733604,86.4929013760988,111.088991052187,94.6886374331849,112.633682727395,94.9906953382098,130.21820766309,178.938247716845,98.5954124132798,72.0204974945129,85.2870519751135,75.5725782905354,151.824997596313,89.4518915197774,100.515099697926,92.6267595235211,86.8890181827066,97.3409764778525,90.4613266067516,152.644004033283,76.5258946109079,73.5339462439688,92.4572222218839,112.755041729255,49.3893852405979,85.8572650812653,86.8203781706018,127.692093676652,92.4690983005343,78.8965733033629,74.9902959110782,138.672389417905,118.376480162201,80.9592047832029,113.864766159637,88.1230943857836,112.341841914832,97.8787241103904,99.7483905146041,103.136531354669,70.8566559443009,129.186987285617,83.2473297846181,79.1596357376454,92.2504825634647,75.0851015691054,120.530063964306,76.4964815233588,87.8798941924877,88.9630167672336,107.390444921583|short_description=p1@PPP2CA,p2@SKP1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5515,6500 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9299,10899 | |||
|TSSclassifier=S | |||
|UniProt=E5RI56 | |||
|association_with_transcript=0bp_to_ENST00000231504,ENST00000519718_5end | |||
|coexpression_cluster_id=C1210 | |||
|description=CAGE_peak_1_at_PPP2CA_5end,CAGE_peak_2_at_SKP1_5end | |||
|id=chr5:133561752..133561791,- | |||
|ontology_enrichment_celltype=CL:0000738!7.17e-38!140;CL:0000037!1.88e-32!172;CL:0000566!1.88e-32!172;CL:0002031!2.52e-30!124;CL:0002032!5.68e-30!165;CL:0000837!5.68e-30!165;CL:0000988!1.48e-29!182;CL:0002087!2.30e-28!119;CL:0000766!1.18e-25!76;CL:0002057!3.88e-25!42;CL:0000860!7.74e-25!45;CL:0000557!1.70e-22!71;CL:0000839!1.77e-21!70;CL:0000763!3.35e-21!112;CL:0000049!3.35e-21!112;CL:0002009!6.24e-21!65;CL:0002194!5.11e-20!63;CL:0000576!5.11e-20!63;CL:0000040!5.11e-20!63;CL:0000559!5.11e-20!63;CL:0000838!1.38e-08!52;CL:0000542!2.90e-08!53;CL:0000051!2.90e-08!53;CL:0000134!8.21e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.31e-19;33!CL:0002057;2.31e-19;33!CL:0000576;2.69e-15;48!CL:0000473;1.10e-12;39!CL:0000234;1.10e-12;39!CL:0000766;2.38e-12;69!CL:0002087;2.11e-09;104!CL:0000738;4.54e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.53e-38,136;CL:0000037,7.55e-33,168;CL:0002031,6.10e-31,120;CL:0000988,1.24e-30,177;CL:0002032,2.34e-30,161;CL:0000837,2.34e-30,161;CL:0002087,5.74e-29,115;CL:0000766,1.23e-26,72;CL:0000860,3.88e-25,42;CL:0002057,3.88e-25,42;CL:0000557,2.07e-23,67;CL:0000839,2.32e-22,66;CL:0002009,7.15e-22,61;CL:0000763,1.16e-21,108;CL:0000049,1.16e-21,108;CL:0002194,6.03e-21,59;CL:0000576,6.03e-21,59;CL:0000040,6.03e-21,59;CL:0000559,6.03e-21,59;CL:0000473,2.08e-20,48;CL:0000234,2.08e-20,48;CL:0000838,1.38e-08,52;CL:0000542,2.90e-08,53;CL:0000051,2.90e-08,53;CL:0000134,8.38e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;2.43e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.17e-19!102;UBERON:0003061!7.17e-19!102;UBERON:0002371!7.84e-18!80;UBERON:0001474!3.72e-16!86;UBERON:0002193!1.33e-14!112;UBERON:0004765!3.53e-14!101;UBERON:0001434!3.53e-14!101;UBERON:0002405!1.36e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.52e-19,98;UBERON:0003061,2.52e-19,98;UBERON:0002371,2.01e-18,76;UBERON:0004765,1.11e-16,90;UBERON:0001474,1.25e-16,82;UBERON:0002193,6.93e-15,108;UBERON:0001434,4.06e-14,100;UBERON:0002405,1.08e-13,93 | |||
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| |||
|short_description=p1@PPP2CA,p2@SKP1 | |||
}} |
Revision as of 13:12, 13 September 2013
Short description: | p1@PPP2CA, p2@SKP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_PPP2CA_5end, CAGE_peak_2_at_SKP1_5end |
Coexpression cluster: | C1210_CD14_Mast_immature_Eosinophils_Basophils_Neutrophils_CD34 |
Association with transcript: | 0bp_to_ENST00000231504, ENST00000519718_5end |
EntrezGene: | 5515,6500 |
HGNC: | 10899&submit=Submit 9299, 10899 |
UniProt: | E5RI56 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.53e-38 | 136 |
hematopoietic stem cell | 7.55e-33 | 168 |
hematopoietic lineage restricted progenitor cell | 6.10e-31 | 120 |
hematopoietic cell | 1.24e-30 | 177 |
hematopoietic oligopotent progenitor cell | 2.34e-30 | 161 |
hematopoietic multipotent progenitor cell | 2.34e-30 | 161 |
nongranular leukocyte | 5.74e-29 | 115 |
myeloid leukocyte | 1.23e-26 | 72 |
classical monocyte | 3.88e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.88e-25 | 42 |
granulocyte monocyte progenitor cell | 2.07e-23 | 67 |
myeloid lineage restricted progenitor cell | 2.32e-22 | 66 |
macrophage dendritic cell progenitor | 7.15e-22 | 61 |
myeloid cell | 1.16e-21 | 108 |
common myeloid progenitor | 1.16e-21 | 108 |
monopoietic cell | 6.03e-21 | 59 |
monocyte | 6.03e-21 | 59 |
monoblast | 6.03e-21 | 59 |
promonocyte | 6.03e-21 | 59 |
defensive cell | 2.08e-20 | 48 |
phagocyte | 2.08e-20 | 48 |
lymphoid lineage restricted progenitor cell | 1.38e-08 | 52 |
lymphocyte | 2.90e-08 | 53 |
common lymphoid progenitor | 2.90e-08 | 53 |
mesenchymal cell | 8.38e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.52e-19 | 98 |
blood island | 2.52e-19 | 98 |
bone marrow | 2.01e-18 | 76 |
skeletal element | 1.11e-16 | 90 |
bone element | 1.25e-16 | 82 |
hemolymphoid system | 6.93e-15 | 108 |
skeletal system | 4.06e-14 | 100 |
immune system | 1.08e-13 | 93 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.