FFCP PHASE1:Mm9::chr2:31101562..31101575,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=14299|HGNC=|MCL_coexpression_id=208|UniProt=|association_with_transcript=-110bp_to_ENSMUST00000150670_5end|description=CAGE_peak_4_at_Ncs1_5end|id=chr2:31101562..31101575,+|ontology_enrichment_celltype=CL:0000117!3.26e-18!23;CL:0000337!3.26e-18!23;CL:0000221!1.19e-12!44;CL:0000133!1.19e-12!44;CL:0002319!1.61e-12!43;CL:0000055!2.19e-12!50;CL:0000393!9.31e-11!39;CL:0000211!9.31e-11!39;CL:0000540!1.93e-10!33;CL:0000047!1.93e-10!33;CL:0000031!1.93e-10!33;CL:0000404!1.93e-10!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.66e-30,23;CL:0000337,2.66e-30,23;CL:0000540,8.83e-20,33;CL:0000047,8.83e-20,33;CL:0000031,8.83e-20,33;CL:0000404,8.83e-20,33;CL:0000393,4.59e-16,39;CL:0000211,4.59e-16,39;CL:0002319,7.40e-16,43;CL:0000221,2.16e-15,44;CL:0000133,2.16e-15,44;CL:0002610,9.40e-09,3;CL:0002614,1.40e-08,3;CL:0002321,5.00e-08,70;CL:0002613,7.73e-08,3;CL:0002612,9.58e-08,3;CL:0000120,7.12e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.49e-26!75;UBERON:0001016!7.49e-26!75;UBERON:0001049!1.99e-25!52;UBERON:0005068!1.99e-25!52;UBERON:0006241!1.99e-25!52;UBERON:0007135!1.99e-25!52;UBERON:0001017!4.34e-25!73;UBERON:0005743!4.34e-25!73;UBERON:0000955!8.34e-24!50;UBERON:0006238!8.34e-24!50;UBERON:0002616!4.42e-23!49;UBERON:0000033!4.22e-21!63;UBERON:0002020!2.35e-20!34;UBERON:0004121!6.66e-20!102;UBERON:0000924!6.66e-20!102;UBERON:0006601!6.66e-20!102;UBERON:0002346!8.90e-20!71;UBERON:0003075!8.90e-20!71;UBERON:0007284!8.90e-20!71;UBERON:0003080!2.56e-17!40;UBERON:0003056!1.08e-16!49;UBERON:0002780!1.69e-16!39;UBERON:0001890!1.69e-16!39;UBERON:0006240!1.69e-16!39;UBERON:0002791!2.73e-16!29;UBERON:0003528!2.73e-16!29;UBERON:0001893!2.73e-16!29;UBERON:0007811!6.94e-11!86;UBERON:0000956!3.18e-10!21;UBERON:0001869!3.18e-10!21;UBERON:0000203!3.18e-10!21;UBERON:0000153!3.74e-10!94;UBERON:0000025!3.04e-09!114;UBERON:0003076!7.96e-09!12;UBERON:0003057!7.96e-09!12;UBERON:0004111!3.43e-08!122;UBERON:0002619!5.13e-08!17;UBERON:0002420!1.32e-07!8;UBERON:0007245!1.32e-07!8;UBERON:0010009!1.32e-07!8;UBERON:0010011!1.32e-07!8;UBERON:0000454!1.32e-07!8;UBERON:0002298!9.65e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.86e-31,54;UBERON:0001017,4.55e-31,73;UBERON:0001016,4.78e-30,75;UBERON:0001049,1.26e-27,52;UBERON:0005068,1.26e-27,52;UBERON:0006241,1.26e-27,52;UBERON:0007135,1.26e-27,52;UBERON:0003076,2.91e-22,12;UBERON:0003057,2.91e-22,12;UBERON:0004121,3.41e-22,95;UBERON:0000924,3.41e-22,95;UBERON:0006601,3.41e-22,95;UBERON:0002346,2.91e-21,64;UBERON:0003075,2.91e-21,64;UBERON:0007284,2.91e-21,64;UBERON:0000955,3.35e-19,47;UBERON:0006238,3.35e-19,47;UBERON:0002020,2.25e-18,34;UBERON:0002616,7.23e-18,46;UBERON:0010371,7.29e-18,73;UBERON:0002420,1.93e-14,8;UBERON:0007245,1.93e-14,8;UBERON:0010009,1.93e-14,8;UBERON:0010011,1.93e-14,8;UBERON:0000454,1.93e-14,8;UBERON:0002240,2.28e-14,6;UBERON:0005174,2.28e-14,6;UBERON:0001137,2.28e-14,6;UBERON:0010314,7.02e-13,92;UBERON:0001948,5.17e-12,5;UBERON:0002315,5.17e-12,5;UBERON:0003080,1.49e-11,40;UBERON:0003528,7.84e-11,29;UBERON:0002791,7.84e-11,29;UBERON:0001893,7.84e-11,29;UBERON:0002950,8.09e-11,4;UBERON:0001891,8.09e-11,4;UBERON:0009616,8.09e-11,4;UBERON:0010286,8.09e-11,4;UBERON:0002780,2.97e-10,39;UBERON:0001890,2.97e-10,39;UBERON:0006240,2.97e-10,39;UBERON:0004733,1.20e-09,6;UBERON:0004732,1.20e-09,6;UBERON:0002028,1.20e-09,6;UBERON:0007277,1.20e-09,6;UBERON:0000025,3.36e-09,114;UBERON:0003056,9.16e-09,49;UBERON:0004684,9.40e-09,3;UBERON:0002275,9.40e-09,3;UBERON:0002038,1.40e-08,3;UBERON:0009663,1.40e-08,3;UBERON:0009661,1.40e-08,3;UBERON:0000125,1.40e-08,3;UBERON:0002308,1.40e-08,3;UBERON:0004111,3.39e-08,122;UBERON:0000369,9.17e-08,5;UBERON:0002435,9.17e-08,5;UBERON:0000204,9.17e-08,5;UBERON:0010082,9.17e-08,5;UBERON:0002257,9.58e-08,3;UBERON:0011216,4.28e-07,194|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.159544317990673,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,1.56478268869608,0,0.439372365468944,0.777719596297134,0.419959264876088,0,0,0,0,0.257259436035947,0.286533439938757,0,2.83243045203437,1.05798195854407,1.26766280701236,1.69422266034566,0.889294796111139,0.449949858640699,0,0,0.299600110518405,0.384218305321555,0.725827286159344,0.540023753326763,0.630974884054146,3.71346279724945,3.53389665522582,0.489963196859816,0.670918297127655,1.83843757322004,5.50579404996943,8.93811366596314,7.68032666281217,3.03338461779446,3.11057988248193,4.68822033501084,8.37548997004143,5.6276261003168,4.73674568108111,3.83017161115768,3.13217697758026,2.60959224155421,0.37863096666592,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,2.92780797011547,1.25668024088073,0,0,0,0,5.24267237916879,2.28750301409313,0.628271760564322,2.60736480288415,1.02286182932132,5.40248915854856,3.40706652442291,0.101839363850316,0,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0,0.476255494059295,0,0.0937017245597288,0.258703370739016,0.431135985865684,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0.621377317606506,0,0.36012412292203,0.946978942340841,0.196764231747404,0.308534225774757,0.232533944750408,0,0.116765342367169,0.16455984991348,0,0.0810688095458557,0,0,0,1.89260953707715,0.514523061896422,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0.758671603812327,0.114248512609729,0,0,0.193952487167626,0.140271639780637,0.252946148497029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,8.34863067936518,6.68106613575558,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,1.60660658210904,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0.354680467284547,0.356737635204141,0,0.304464949114599,0,0,0,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0,7.41701208042039,0,0,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0,0,0.209088296014469,0,0,0,0,0,0,9.58277995763124,0,0,0,0.129159823477731,0.675824501963113,0,0,0,0,3.16833006883652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,1.6942555278512,0.460325236507177,0,0.68741272937475,2.05524755931193,2.2661816921691,0.675022500231806,0.900642406448441,0.906284817968409,0,0.415149390336707,0.399024873401031,0,0,0.419226325255965,0.367687016900028,0,0.824140228955577,0,0,0.25347929989024,0,0.0936415074698824,0.448176066834085,0.229741875822453,0.476293691283074,0.231768651889711,0.578727661391115,0,0.294397840268795,0,0,0,0.290692833264657,0.376437521661322,0.338458431566706,0.365855945745545,0,0.543216455383447,0,0.474540072496697,0.197008964751127,0,0.464810523557898,0,0.999242311751784,0,0.214871054048298,0.956441660344217,0,0.231867835620421|short_description=p4@Ncs1}} | ||
|EntrezGene=14299 | |||
|HGNC= | |||
|MCL_coexpression_id=208 | |||
|UniProt= | |||
|association_with_transcript=-110bp_to_ENSMUST00000150670_5end | |||
|description=CAGE_peak_4_at_Ncs1_5end | |||
|id=chr2:31101562..31101575,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.26e-18!23;CL:0000337!3.26e-18!23;CL:0000221!1.19e-12!44;CL:0000133!1.19e-12!44;CL:0002319!1.61e-12!43;CL:0000055!2.19e-12!50;CL:0000393!9.31e-11!39;CL:0000211!9.31e-11!39;CL:0000540!1.93e-10!33;CL:0000047!1.93e-10!33;CL:0000031!1.93e-10!33;CL:0000404!1.93e-10!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.66e-30,23;CL:0000337,2.66e-30,23;CL:0000540,8.83e-20,33;CL:0000047,8.83e-20,33;CL:0000031,8.83e-20,33;CL:0000404,8.83e-20,33;CL:0000393,4.59e-16,39;CL:0000211,4.59e-16,39;CL:0002319,7.40e-16,43;CL:0000221,2.16e-15,44;CL:0000133,2.16e-15,44;CL:0002610,9.40e-09,3;CL:0002614,1.40e-08,3;CL:0002321,5.00e-08,70;CL:0002613,7.73e-08,3;CL:0002612,9.58e-08,3;CL:0000120,7.12e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.49e-26!75;UBERON:0001016!7.49e-26!75;UBERON:0001049!1.99e-25!52;UBERON:0005068!1.99e-25!52;UBERON:0006241!1.99e-25!52;UBERON:0007135!1.99e-25!52;UBERON:0001017!4.34e-25!73;UBERON:0005743!4.34e-25!73;UBERON:0000955!8.34e-24!50;UBERON:0006238!8.34e-24!50;UBERON:0002616!4.42e-23!49;UBERON:0000033!4.22e-21!63;UBERON:0002020!2.35e-20!34;UBERON:0004121!6.66e-20!102;UBERON:0000924!6.66e-20!102;UBERON:0006601!6.66e-20!102;UBERON:0002346!8.90e-20!71;UBERON:0003075!8.90e-20!71;UBERON:0007284!8.90e-20!71;UBERON:0003080!2.56e-17!40;UBERON:0003056!1.08e-16!49;UBERON:0002780!1.69e-16!39;UBERON:0001890!1.69e-16!39;UBERON:0006240!1.69e-16!39;UBERON:0002791!2.73e-16!29;UBERON:0003528!2.73e-16!29;UBERON:0001893!2.73e-16!29;UBERON:0007811!6.94e-11!86;UBERON:0000956!3.18e-10!21;UBERON:0001869!3.18e-10!21;UBERON:0000203!3.18e-10!21;UBERON:0000153!3.74e-10!94;UBERON:0000025!3.04e-09!114;UBERON:0003076!7.96e-09!12;UBERON:0003057!7.96e-09!12;UBERON:0004111!3.43e-08!122;UBERON:0002619!5.13e-08!17;UBERON:0002420!1.32e-07!8;UBERON:0007245!1.32e-07!8;UBERON:0010009!1.32e-07!8;UBERON:0010011!1.32e-07!8;UBERON:0000454!1.32e-07!8;UBERON:0002298!9.65e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.86e-31,54;UBERON:0001017,4.55e-31,73;UBERON:0001016,4.78e-30,75;UBERON:0001049,1.26e-27,52;UBERON:0005068,1.26e-27,52;UBERON:0006241,1.26e-27,52;UBERON:0007135,1.26e-27,52;UBERON:0003076,2.91e-22,12;UBERON:0003057,2.91e-22,12;UBERON:0004121,3.41e-22,95;UBERON:0000924,3.41e-22,95;UBERON:0006601,3.41e-22,95;UBERON:0002346,2.91e-21,64;UBERON:0003075,2.91e-21,64;UBERON:0007284,2.91e-21,64;UBERON:0000955,3.35e-19,47;UBERON:0006238,3.35e-19,47;UBERON:0002020,2.25e-18,34;UBERON:0002616,7.23e-18,46;UBERON:0010371,7.29e-18,73;UBERON:0002420,1.93e-14,8;UBERON:0007245,1.93e-14,8;UBERON:0010009,1.93e-14,8;UBERON:0010011,1.93e-14,8;UBERON:0000454,1.93e-14,8;UBERON:0002240,2.28e-14,6;UBERON:0005174,2.28e-14,6;UBERON:0001137,2.28e-14,6;UBERON:0010314,7.02e-13,92;UBERON:0001948,5.17e-12,5;UBERON:0002315,5.17e-12,5;UBERON:0003080,1.49e-11,40;UBERON:0003528,7.84e-11,29;UBERON:0002791,7.84e-11,29;UBERON:0001893,7.84e-11,29;UBERON:0002950,8.09e-11,4;UBERON:0001891,8.09e-11,4;UBERON:0009616,8.09e-11,4;UBERON:0010286,8.09e-11,4;UBERON:0002780,2.97e-10,39;UBERON:0001890,2.97e-10,39;UBERON:0006240,2.97e-10,39;UBERON:0004733,1.20e-09,6;UBERON:0004732,1.20e-09,6;UBERON:0002028,1.20e-09,6;UBERON:0007277,1.20e-09,6;UBERON:0000025,3.36e-09,114;UBERON:0003056,9.16e-09,49;UBERON:0004684,9.40e-09,3;UBERON:0002275,9.40e-09,3;UBERON:0002038,1.40e-08,3;UBERON:0009663,1.40e-08,3;UBERON:0009661,1.40e-08,3;UBERON:0000125,1.40e-08,3;UBERON:0002308,1.40e-08,3;UBERON:0004111,3.39e-08,122;UBERON:0000369,9.17e-08,5;UBERON:0002435,9.17e-08,5;UBERON:0000204,9.17e-08,5;UBERON:0010082,9.17e-08,5;UBERON:0002257,9.58e-08,3;UBERON:0011216,4.28e-07,194 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.159544317990673,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.183546752161682,1.56478268869608,0,0.439372365468944,0.777719596297134,0.419959264876088,0,0,0,0,0.257259436035947,0.286533439938757,0,2.83243045203437,1.05798195854407,1.26766280701236,1.69422266034566,0.889294796111139,0.449949858640699,0,0,0.299600110518405,0.384218305321555,0.725827286159344,0.540023753326763,0.630974884054146,3.71346279724945,3.53389665522582,0.489963196859816,0.670918297127655,1.83843757322004,5.50579404996943,8.93811366596314,7.68032666281217,3.03338461779446,3.11057988248193,4.68822033501084,8.37548997004143,5.6276261003168,4.73674568108111,3.83017161115768,3.13217697758026,2.60959224155421,0.37863096666592,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,2.92780797011547,1.25668024088073,0,0,0,0,5.24267237916879,2.28750301409313,0.628271760564322,2.60736480288415,1.02286182932132,5.40248915854856,3.40706652442291,0.101839363850316,0,0,0,0.130120442962704,0.459804208866946,0.180062129805349,0,0.476255494059295,0,0.0937017245597288,0.258703370739016,0.431135985865684,0.189106080167819,0,0,0.278047249225598,0,0,0,0,0,0,0.621377317606506,0,0.36012412292203,0.946978942340841,0.196764231747404,0.308534225774757,0.232533944750408,0,0.116765342367169,0.16455984991348,0,0.0810688095458557,0,0,0,1.89260953707715,0.514523061896422,0,0,0.213288250535234,0,0.128867461322093,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0.758671603812327,0.114248512609729,0,0,0.193952487167626,0.140271639780637,0.252946148497029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0,0,8.34863067936518,6.68106613575558,0,0.252470927204373,0,0,0.215423397732799,0,0,0,0,0,0,1.60660658210904,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0.354680467284547,0.356737635204141,0,0.304464949114599,0,0,0,0,0.161464426695906,0.0603129249281559,0.119372344003136,0,0,7.41701208042039,0,0,0,0,0,0,0,0.139951452323658,0,0,0.158167996790568,0,0,0.209088296014469,0,0,0,0,0,0,9.58277995763124,0,0,0,0.129159823477731,0.675824501963113,0,0,0,0,3.16833006883652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,1.6942555278512,0.460325236507177,0,0.68741272937475,2.05524755931193,2.2661816921691,0.675022500231806,0.900642406448441,0.906284817968409,0,0.415149390336707,0.399024873401031,0,0,0.419226325255965,0.367687016900028,0,0.824140228955577,0,0,0.25347929989024,0,0.0936415074698824,0.448176066834085,0.229741875822453,0.476293691283074,0.231768651889711,0.578727661391115,0,0.294397840268795,0,0,0,0.290692833264657,0.376437521661322,0.338458431566706,0.365855945745545,0,0.543216455383447,0,0.474540072496697,0.197008964751127,0,0.464810523557898,0,0.999242311751784,0,0.214871054048298,0.956441660344217,0,0.231867835620421 | |||
|short_description=p4@Ncs1 | |||
}} |
Revision as of 23:43, 13 September 2013
Short description: | p4@Ncs1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ncs1_5end |
Coexpression cluster: | MCL_coexpression_mm9:208 |
Association with transcript: | -110bp_to_ENSMUST00000150670_5end |
EntrezGene: | Ncs1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.66e-30 | 23 |
neuroblast (sensu Vertebrata) | 2.66e-30 | 23 |
neuron | 8.83e-20 | 33 |
neuronal stem cell | 8.83e-20 | 33 |
neuroblast | 8.83e-20 | 33 |
electrically signaling cell | 8.83e-20 | 33 |
electrically responsive cell | 4.59e-16 | 39 |
electrically active cell | 4.59e-16 | 39 |
neural cell | 7.40e-16 | 43 |
ectodermal cell | 2.16e-15 | 44 |
neurectodermal cell | 2.16e-15 | 44 |
raphe nuclei neuron | 9.40e-09 | 3 |
neuron of the substantia nigra | 1.40e-08 | 3 |
embryonic cell | 5.00e-08 | 70 |
striatum neuron | 7.73e-08 | 3 |
neuron of the ventral spinal cord | 9.58e-08 | 3 |
granule cell | 7.12e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.