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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008443
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000271
|is_a=EFO:0002091;;FF:0000271
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12368
|name=mesenchymal precursor cell - cardiac, donor1
|name=mesenchymal precursor cell - cardiac, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=NKX3-1:2.2371932277;XBP1:2.06143352007;HIF1A:1.81703629484;bHLH_family:1.7558351343;ALX4:1.75477194829;HSF1,2:1.3893086788;MAFB:1.30298949596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25568075011;ATF6:1.23363048148;TP53:1.19296830589;PAX1,9:1.11432470392;HOX{A5,B5}:1.10249756752;HLF:1.10110945074;EBF1:1.05741249054;AIRE:1.0290631758;NANOG{mouse}:1.01909357;SREBF1,2:1.00693230253;RXR{A,B,G}:1.00543966912;EN1,2:1.00209521458;TAL1_TCF{3,4,12}:0.986835739171;NFE2L2:0.96939828799;IKZF1:0.944081959895;HES1:0.912925813795;UFEwm:0.89099948531;HOX{A4,D4}:0.890771711779;ESR1:0.889542891017;NFE2L1:0.8874385209;ZNF238:0.86560113151;CEBPA,B_DDIT3:0.860383836885;NFATC1..3:0.768394001065;TLX2:0.708699160195;NFE2:0.702872471706;NFIX:0.660290195708;HMX1:0.657297085571;ELK1,4_GABP{A,B1}:0.627503534821;NKX2-1,4:0.593818417516;MYBL2:0.590990887219;TEAD1:0.590161558946;BACH2:0.574224386809;RXRA_VDR{dimer}:0.569452289588;PAX4:0.566587972808;NR3C1:0.558955263144;STAT2,4,6:0.541358511785;PAX2:0.537796382807;FOS_FOS{B,L1}_JUN{B,D}:0.523186523393;TFCP2:0.507413857115;HMGA1,2:0.501906412858;TEF:0.479234527636;ZBTB6:0.4770942655;FOXO1,3,4:0.468302025645;LHX3,4:0.446495046327;FOXP3:0.4445541095;EVI1:0.430075599283;CRX:0.428761628224;TBX4,5:0.427793303481;TLX1..3_NFIC{dimer}:0.388245487244;PPARG:0.380745649704;RFX1:0.346871165954;GZF1:0.34648573887;FOSL2:0.34508843111;AHR_ARNT_ARNT2:0.311066576778;GTF2A1,2:0.309872861676;TFAP4:0.305759957792;NFKB1_REL_RELA:0.294202003937;TFAP2B:0.272784863729;TBP:0.270879997883;ATF2:0.244304107996;NKX2-2,8:0.230511747141;ALX1:0.223148914995;ATF4:0.171683244498;STAT1,3:0.171031812606;GFI1B:0.16415961843;PRDM1:0.159314598113;KLF4:0.144414907977;SRF:0.108386129112;CREB1:0.106915295865;ATF5_CREB3:0.0891257396281;ARID5B:0.0876077017445;IRF1,2:0.0857193939276;GLI1..3:0.0779740406225;POU3F1..4:0.0775099425769;GTF2I:0.0762478027611;PATZ1:0.0755141258848;BPTF:0.0674120714147;ESRRA:0.0605993490201;REST:0.0485249128466;NFIL3:0.0376175786717;AR:0.0172641071918;MYFfamily:0.00197526545094;SP1:-0.0100925018676;POU1F1:-0.0135583111797;ZNF143:-0.0314548206981;NHLH1,2:-0.0362232586318;MAZ:-0.03639402393;SMAD1..7,9:-0.0540197801984;SOX17:-0.0561612136628;NR6A1:-0.0632533236153;MEF2{A,B,C,D}:-0.0738436997357;HNF1A:-0.0840166489986;ZNF148:-0.088689025021;FOX{I1,J2}:-0.0912409281225;PAX6:-0.0944453231189;ZBTB16:-0.0951574794009;RUNX1..3:-0.100072848115;HAND1,2:-0.121811286405;JUN:-0.138773844451;ZNF423:-0.140650822732;SPZ1:-0.145451322811;STAT5{A,B}:-0.146652557986;NKX3-2:-0.149610073855;ADNP_IRX_SIX_ZHX:-0.152536082954;PAX8:-0.170755711953;IRF7:-0.17817678637;FOX{D1,D2}:-0.18106853094;NRF1:-0.182433480745;LMO2:-0.182461439513;PAX5:-0.187814845164;HIC1:-0.192807879894;ONECUT1,2:-0.198187433458;FOXL1:-0.19896974674;MZF1:-0.204793312723;CDC5L:-0.211098751831;YY1:-0.212747638558;GATA4:-0.219731632264;MTF1:-0.229360631292;ZIC1..3:-0.23028940009;ELF1,2,4:-0.242624830121;ZFP161:-0.24683064494;FOXN1:-0.251259490441;GCM1,2:-0.272834306681;HNF4A_NR2F1,2:-0.298291207068;PRRX1,2:-0.303196663019;HOXA9_MEIS1:-0.308667886776;TFAP2{A,C}:-0.348524720887;POU6F1:-0.362285598664;GFI1:-0.371163713974;PBX1:-0.37250726696;MTE{core}:-0.39506021193;PAX3,7:-0.395517658128;SPI1:-0.412399690105;EGR1..3:-0.425728931016;MYOD1:-0.434071071948;SOX2:-0.435581047152;RORA:-0.45824734959;DMAP1_NCOR{1,2}_SMARC:-0.476439989434;RREB1:-0.478871730567;FOXQ1:-0.481512470794;ETS1,2:-0.482779845527;LEF1_TCF7_TCF7L1,2:-0.495224449309;XCPE1{core}:-0.505990779425;RFX2..5_RFXANK_RFXAP:-0.512514502726;SPIB:-0.536609032548;EP300:-0.56829973469;MED-1{core}:-0.591495689256;CDX1,2,4:-0.612094104178;GATA6:-0.623324011993;HOX{A6,A7,B6,B7}:-0.623994420069;HBP1_HMGB_SSRP1_UBTF:-0.655686404105;TFDP1:-0.672346892572;ZNF384:-0.69306750674;NFY{A,B,C}:-0.708402489125;ZEB1:-0.712926135023;SNAI1..3:-0.714172533151;DBP:-0.722289283992;NKX6-1,2:-0.735081445791;NR1H4:-0.753013376157;TGIF1:-0.753546065602;SOX5:-0.787902200628;MYB:-0.796491541584;FOXA2:-0.812842526042;CUX2:-0.815511552266;NR5A1,2:-0.869108686705;PDX1:-0.885824353477;RBPJ:-0.88853425784;SOX{8,9,10}:-0.894137261481;FOXD3:-0.941397427158;POU5F1:-0.98111499848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.998295133665;FOX{F1,F2,J1}:-1.02479232932;FOXP1:-1.07647636039;FOXM1:-1.12510863483;BREu{core}:-1.13807672592;VSX1,2:-1.17143269329;TOPORS:-1.17910902526;OCT4_SOX2{dimer}:-1.19763298491;NANOG:-1.25194172945;T:-1.30536728049;E2F1..5:-1.31933769871;IKZF2:-1.32815673904;NKX2-3_NKX2-5:-1.43951752596;POU2F1..3:-1.63971248385;PITX1..3:-1.71694850992
|top_motifs=NKX3-1:2.2371932277;XBP1:2.06143352007;HIF1A:1.81703629484;bHLH_family:1.7558351343;ALX4:1.75477194829;HSF1,2:1.3893086788;MAFB:1.30298949596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25568075011;ATF6:1.23363048148;TP53:1.19296830589;PAX1,9:1.11432470392;HOX{A5,B5}:1.10249756752;HLF:1.10110945074;EBF1:1.05741249054;AIRE:1.0290631758;NANOG{mouse}:1.01909357;SREBF1,2:1.00693230253;RXR{A,B,G}:1.00543966912;EN1,2:1.00209521458;TAL1_TCF{3,4,12}:0.986835739171;NFE2L2:0.96939828799;IKZF1:0.944081959895;HES1:0.912925813795;UFEwm:0.89099948531;HOX{A4,D4}:0.890771711779;ESR1:0.889542891017;NFE2L1:0.8874385209;ZNF238:0.86560113151;CEBPA,B_DDIT3:0.860383836885;NFATC1..3:0.768394001065;TLX2:0.708699160195;NFE2:0.702872471706;NFIX:0.660290195708;HMX1:0.657297085571;ELK1,4_GABP{A,B1}:0.627503534821;NKX2-1,4:0.593818417516;MYBL2:0.590990887219;TEAD1:0.590161558946;BACH2:0.574224386809;RXRA_VDR{dimer}:0.569452289588;PAX4:0.566587972808;NR3C1:0.558955263144;STAT2,4,6:0.541358511785;PAX2:0.537796382807;FOS_FOS{B,L1}_JUN{B,D}:0.523186523393;TFCP2:0.507413857115;HMGA1,2:0.501906412858;TEF:0.479234527636;ZBTB6:0.4770942655;FOXO1,3,4:0.468302025645;LHX3,4:0.446495046327;FOXP3:0.4445541095;EVI1:0.430075599283;CRX:0.428761628224;TBX4,5:0.427793303481;TLX1..3_NFIC{dimer}:0.388245487244;PPARG:0.380745649704;RFX1:0.346871165954;GZF1:0.34648573887;FOSL2:0.34508843111;AHR_ARNT_ARNT2:0.311066576778;GTF2A1,2:0.309872861676;TFAP4:0.305759957792;NFKB1_REL_RELA:0.294202003937;TFAP2B:0.272784863729;TBP:0.270879997883;ATF2:0.244304107996;NKX2-2,8:0.230511747141;ALX1:0.223148914995;ATF4:0.171683244498;STAT1,3:0.171031812606;GFI1B:0.16415961843;PRDM1:0.159314598113;KLF4:0.144414907977;SRF:0.108386129112;CREB1:0.106915295865;ATF5_CREB3:0.0891257396281;ARID5B:0.0876077017445;IRF1,2:0.0857193939276;GLI1..3:0.0779740406225;POU3F1..4:0.0775099425769;GTF2I:0.0762478027611;PATZ1:0.0755141258848;BPTF:0.0674120714147;ESRRA:0.0605993490201;REST:0.0485249128466;NFIL3:0.0376175786717;AR:0.0172641071918;MYFfamily:0.00197526545094;SP1:-0.0100925018676;POU1F1:-0.0135583111797;ZNF143:-0.0314548206981;NHLH1,2:-0.0362232586318;MAZ:-0.03639402393;SMAD1..7,9:-0.0540197801984;SOX17:-0.0561612136628;NR6A1:-0.0632533236153;MEF2{A,B,C,D}:-0.0738436997357;HNF1A:-0.0840166489986;ZNF148:-0.088689025021;FOX{I1,J2}:-0.0912409281225;PAX6:-0.0944453231189;ZBTB16:-0.0951574794009;RUNX1..3:-0.100072848115;HAND1,2:-0.121811286405;JUN:-0.138773844451;ZNF423:-0.140650822732;SPZ1:-0.145451322811;STAT5{A,B}:-0.146652557986;NKX3-2:-0.149610073855;ADNP_IRX_SIX_ZHX:-0.152536082954;PAX8:-0.170755711953;IRF7:-0.17817678637;FOX{D1,D2}:-0.18106853094;NRF1:-0.182433480745;LMO2:-0.182461439513;PAX5:-0.187814845164;HIC1:-0.192807879894;ONECUT1,2:-0.198187433458;FOXL1:-0.19896974674;MZF1:-0.204793312723;CDC5L:-0.211098751831;YY1:-0.212747638558;GATA4:-0.219731632264;MTF1:-0.229360631292;ZIC1..3:-0.23028940009;ELF1,2,4:-0.242624830121;ZFP161:-0.24683064494;FOXN1:-0.251259490441;GCM1,2:-0.272834306681;HNF4A_NR2F1,2:-0.298291207068;PRRX1,2:-0.303196663019;HOXA9_MEIS1:-0.308667886776;TFAP2{A,C}:-0.348524720887;POU6F1:-0.362285598664;GFI1:-0.371163713974;PBX1:-0.37250726696;MTE{core}:-0.39506021193;PAX3,7:-0.395517658128;SPI1:-0.412399690105;EGR1..3:-0.425728931016;MYOD1:-0.434071071948;SOX2:-0.435581047152;RORA:-0.45824734959;DMAP1_NCOR{1,2}_SMARC:-0.476439989434;RREB1:-0.478871730567;FOXQ1:-0.481512470794;ETS1,2:-0.482779845527;LEF1_TCF7_TCF7L1,2:-0.495224449309;XCPE1{core}:-0.505990779425;RFX2..5_RFXANK_RFXAP:-0.512514502726;SPIB:-0.536609032548;EP300:-0.56829973469;MED-1{core}:-0.591495689256;CDX1,2,4:-0.612094104178;GATA6:-0.623324011993;HOX{A6,A7,B6,B7}:-0.623994420069;HBP1_HMGB_SSRP1_UBTF:-0.655686404105;TFDP1:-0.672346892572;ZNF384:-0.69306750674;NFY{A,B,C}:-0.708402489125;ZEB1:-0.712926135023;SNAI1..3:-0.714172533151;DBP:-0.722289283992;NKX6-1,2:-0.735081445791;NR1H4:-0.753013376157;TGIF1:-0.753546065602;SOX5:-0.787902200628;MYB:-0.796491541584;FOXA2:-0.812842526042;CUX2:-0.815511552266;NR5A1,2:-0.869108686705;PDX1:-0.885824353477;RBPJ:-0.88853425784;SOX{8,9,10}:-0.894137261481;FOXD3:-0.941397427158;POU5F1:-0.98111499848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.998295133665;FOX{F1,F2,J1}:-1.02479232932;FOXP1:-1.07647636039;FOXM1:-1.12510863483;BREu{core}:-1.13807672592;VSX1,2:-1.17143269329;TOPORS:-1.17910902526;OCT4_SOX2{dimer}:-1.19763298491;NANOG:-1.25194172945;T:-1.30536728049;E2F1..5:-1.31933769871;IKZF2:-1.32815673904;NKX2-3_NKX2-5:-1.43951752596;POU2F1..3:-1.63971248385;PITX1..3:-1.71694850992
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008443
|accession_numbers=DRX008551;DRR009423;DRZ000848;DRZ002233;CAGE
|library_id=CNhs12368
}}
}}

Revision as of 18:55, 16 October 2013


Name:mesenchymal precursor cell - cardiac, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueheart
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008443
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.46
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.133
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.415
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0441
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.784
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.192
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0895
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.6
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.164
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.164
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0895
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.227
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.195
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.48
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.647
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.375
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0895
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.764
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12368

Jaspar motifP-value
MA0002.20.835
MA0003.10.353
MA0004.10.105
MA0006.10.7
MA0007.10.758
MA0009.10.446
MA0014.10.419
MA0017.10.357
MA0018.20.0155
MA0019.10.756
MA0024.14.49164e-9
MA0025.10.264
MA0027.10.98
MA0028.10.0816
MA0029.10.4
MA0030.10.419
MA0031.10.661
MA0035.20.198
MA0038.10.0613
MA0039.20.338
MA0040.10.0786
MA0041.10.406
MA0042.10.914
MA0043.10.239
MA0046.10.0239
MA0047.20.577
MA0048.10.358
MA0050.10.712
MA0051.10.165
MA0052.10.325
MA0055.10.122
MA0057.10.844
MA0058.10.0268
MA0059.10.0734
MA0060.14.04367e-7
MA0061.10.0735
MA0062.20.834
MA0065.20.383
MA0066.10.766
MA0067.10.207
MA0068.10.51
MA0069.10.26
MA0070.10.466
MA0071.10.964
MA0072.10.934
MA0073.10.846
MA0074.10.252
MA0076.10.262
MA0077.10.234
MA0078.10.99
MA0079.20.481
MA0080.23.8705e-5
MA0081.10.199
MA0083.10.429
MA0084.10.0755
MA0087.10.615
MA0088.10.462
MA0090.10.0068
MA0091.10.203
MA0092.10.841
MA0093.10.0445
MA0099.27.56807e-14
MA0100.10.063
MA0101.10.00348
MA0102.20.351
MA0103.10.00493
MA0104.20.459
MA0105.10.257
MA0106.10.00119
MA0107.10.00155
MA0108.20.164
MA0111.10.0354
MA0112.20.0439
MA0113.10.411
MA0114.10.448
MA0115.10.157
MA0116.10.905
MA0117.10.861
MA0119.10.509
MA0122.10.964
MA0124.10.0346
MA0125.10.14
MA0131.10.476
MA0135.10.32
MA0136.16.57061e-5
MA0137.20.086
MA0138.20.652
MA0139.10.281
MA0140.10.577
MA0141.10.663
MA0142.10.067
MA0143.10.6
MA0144.10.0173
MA0145.10.612
MA0146.10.931
MA0147.10.732
MA0148.10.908
MA0149.10.604
MA0150.11.68396e-7
MA0152.10.0121
MA0153.10.976
MA0154.10.66
MA0155.10.344
MA0156.10.0346
MA0157.10.934
MA0159.10.212
MA0160.10.701
MA0162.10.0352
MA0163.10.0793
MA0164.10.319
MA0258.10.591
MA0259.10.948



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12368

Novel motifP-value
10.965
100.335
1000.988
1010.661
1020.585
1030.109
1040.753
1050.66
1060.438
1070.621
1080.174
1090.0592
110.474
1100.334
1110.673
1120.105
1138.96369e-4
1140.374
1150.619
1160.0515
1170.0373
1180.713
1190.729
120.932
1200.11
1210.624
1220.0811
1238.28523e-4
1240.0465
1250.916
1260.903
1270.817
1280.936
1290.214
130.415
1300.567
1310.133
1320.401
1330.538
1340.569
1350.541
1360.229
1370.749
1380.943
1390.141
140.446
1400.721
1410.51
1420.749
1430.213
1440.534
1450.976
1460.952
1470.273
1480.909
1490.239
150.797
1500.17
1510.832
1520.0271
1530.448
1540.302
1550.00511
1560.163
1570.943
1580.065
1590.126
160.0452
1600.296
1610.333
1620.194
1630.556
1640.00988
1650.702
1660.357
1670.383
1680.855
1690.119
170.549
180.0228
190.132
20.797
200.326
210.52
220.142
230.24
240.87
250.0579
260.703
270.881
280.841
290.0674
30.696
300.973
310.535
322.40754e-5
330.669
340.646
350.89
360.0483
370.00161
380.24
390.251
40.023
400.407
410.989
420.397
430.669
440.943
450.861
460.837
470.558
480.857
490.118
50.888
500.876
510.611
520.947
530.00918
540.959
550.216
560.658
570.723
580.12
590.427
60.357
600.565
610.677
620.13
630.553
640.886
650.97
660.201
670.319
680.614
690.321
70.141
700.747
710.522
720.685
730.00154
740.0608
750.21
760.345
770.0109
780.018
790.509
80.517
800.663
810.8
820.958
830.758
840.857
850.159
860.19
870.00288
880.626
890.176
90.689
900.933
910.491
920.156
930.799
940.504
950.011
960.468
970.164
980.125
990.695



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12368


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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