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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007701
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_obsolete=
|is_obsolete=
|library_ids=CNhs13055
|name=acute myeloid leukemia (FAB M3) cell line:HL60
|name=acute myeloid leukemia (FAB M3) cell line:HL60
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=MYB:2.53448643644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.09697885565;YY1:1.74789832407;E2F1..5:1.67725788821;ELK1,4_GABP{A,B1}:1.62278557959;bHLH_family:1.53807417817;NKX2-2,8:1.36211876451;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.24403730038;FOXD3:1.20579459372;PITX1..3:1.14636676412;ZBTB16:1.07353848841;ZNF143:1.04908585311;CDX1,2,4:0.983836204798;FOXA2:0.93024409256;MYOD1:0.872109943771;STAT5{A,B}:0.862886508175;TEF:0.84711936078;SPIB:0.833759398034;AIRE:0.784112532051;ELF1,2,4:0.783965116936;BREu{core}:0.763387201497;CRX:0.728322605043;NR5A1,2:0.712303277924;GATA6:0.693530312022;NRF1:0.646966639347;HAND1,2:0.626155390462;PAX4:0.606949514711;AHR_ARNT_ARNT2:0.599655484455;SPI1:0.597152604556;GATA4:0.561816868121;CUX2:0.537809949481;TOPORS:0.503271437575;KLF4:0.487528179701;IKZF1:0.478746019339;DMAP1_NCOR{1,2}_SMARC:0.475296808156;FOXP3:0.468150538359;GCM1,2:0.451698046977;HOXA9_MEIS1:0.432094741074;ALX1:0.41741440779;FOX{I1,J2}:0.416184088403;NFY{A,B,C}:0.408993637422;TFDP1:0.405525652016;ESRRA:0.401355409025;IKZF2:0.397070633402;HES1:0.37226537805;POU1F1:0.366087624561;OCT4_SOX2{dimer}:0.364135196392;RXRA_VDR{dimer}:0.343396418097;ZEB1:0.32144288786;AR:0.313294560392;CEBPA,B_DDIT3:0.313254009056;PAX3,7:0.304258367548;HOX{A4,D4}:0.291943007613;RUNX1..3:0.291714498618;PAX8:0.279189889782;PAX2:0.259161089662;ETS1,2:0.228302372568;NKX3-1:0.22307168035;NFIL3:0.213170307155;NKX6-1,2:0.211021309231;T:0.206350545003;HOX{A6,A7,B6,B7}:0.202470357055;NKX3-2:0.198186942939;UFEwm:0.129955727359;NR6A1:0.125712333414;PPARG:0.125036741338;PRRX1,2:0.0943976088806;CREB1:0.0568439795742;NKX2-1,4:0.0338275977457;FOXM1:0.029894874408;ARID5B:-0.00488259396331;SNAI1..3:-0.0172543144277;HOX{A5,B5}:-0.0264244261902;HIF1A:-0.0299251459133;NANOG{mouse}:-0.0335491607073;HNF4A_NR2F1,2:-0.0338819027024;HLF:-0.0404755328749;ZNF238:-0.0414257242268;PBX1:-0.0468155484596;FOXP1:-0.0553773808893;GFI1:-0.0559932972154;HSF1,2:-0.0581667292417;RFX2..5_RFXANK_RFXAP:-0.0676769022958;ONECUT1,2:-0.0761448301445;RORA:-0.0831020156105;EVI1:-0.106309941981;POU3F1..4:-0.123538185218;SOX{8,9,10}:-0.126519192692;HNF1A:-0.164454666331;VSX1,2:-0.194707504482;ZNF384:-0.204203832839;REST:-0.214796470957;HBP1_HMGB_SSRP1_UBTF:-0.224188712803;POU2F1..3:-0.232327625898;ATF5_CREB3:-0.246944829281;ADNP_IRX_SIX_ZHX:-0.259415103248;NFKB1_REL_RELA:-0.280079279262;POU6F1:-0.283452085918;NANOG:-0.320101634618;POU5F1:-0.321797711382;ZNF423:-0.324084029761;RXR{A,B,G}:-0.330565542052;TLX2:-0.334228346101;PRDM1:-0.339958061644;FOXQ1:-0.340446286969;NFE2:-0.355459458793;NFE2L2:-0.402786269867;NFE2L1:-0.413184697039;TGIF1:-0.420627155887;MAFB:-0.436405155763;BPTF:-0.442611426745;NR1H4:-0.445047828943;RFX1:-0.452529188177;RBPJ:-0.475650404011;NFIX:-0.480491615939;ESR1:-0.484977215986;LEF1_TCF7_TCF7L1,2:-0.499392537532;CDC5L:-0.499854223885;FOXN1:-0.515778458588;FOSL2:-0.531357773647;IRF7:-0.547250555767;FOS_FOS{B,L1}_JUN{B,D}:-0.567588289122;ATF4:-0.572393826266;DBP:-0.605061767782;PAX5:-0.610082229554;BACH2:-0.625620171846;SPZ1:-0.637299019513;NKX2-3_NKX2-5:-0.645845200018;FOX{F1,F2,J1}:-0.645933000853;NHLH1,2:-0.651915626037;MYBL2:-0.65206191427;HMGA1,2:-0.653242148209;MEF2{A,B,C,D}:-0.660049315799;LHX3,4:-0.660375181852;PAX6:-0.68328368984;LMO2:-0.714587717883;ALX4:-0.720279726847;GZF1:-0.730215669141;IRF1,2:-0.735588603546;SOX17:-0.747758882725;PDX1:-0.781129473521;MYFfamily:-0.781543771569;XBP1:-0.793745489891;EN1,2:-0.848744643273;SRF:-0.879672586437;ZIC1..3:-0.900589315482;MTF1:-0.909262344989;ZBTB6:-0.924215886976;SOX5:-0.97296299506;EP300:-0.984705837493;SMAD1..7,9:-1.00383279538;SREBF1,2:-1.02745308375;ZFP161:-1.04342089572;ATF2:-1.05940504228;TAL1_TCF{3,4,12}:-1.09263158129;RREB1:-1.09992368766;FOXL1:-1.10551816597;FOXO1,3,4:-1.10803397651;STAT1,3:-1.11234068575;TP53:-1.14466112068;ZNF148:-1.1637505974;STAT2,4,6:-1.18816142071;MZF1:-1.20073024056;GTF2A1,2:-1.2011928174;HMX1:-1.20179794608;MTE{core}:-1.20913745091;TEAD1:-1.24869948317;TBP:-1.25363685588;SOX2:-1.28210908195;NR3C1:-1.2846304865;GTF2I:-1.28514593004;EBF1:-1.29739253889;HIC1:-1.30106369349;MED-1{core}:-1.33165125319;PAX1,9:-1.35752120903;TFAP2{A,C}:-1.38687644825;GFI1B:-1.40499649788;TLX1..3_NFIC{dimer}:-1.40706236355;FOX{D1,D2}:-1.42291833403;TBX4,5:-1.42728284215;NFATC1..3:-1.44187094853;ATF6:-1.53875234581;TFAP4:-1.60096238776;JUN:-1.63739372213;PATZ1:-1.89837378454;TFAP2B:-1.94052432405;EGR1..3:-1.97523590796;TFCP2:-2.03329912733;GLI1..3:-2.04843357697;MAZ:-2.29357014719;XCPE1{core}:-2.79825317008;SP1:-2.99306636254
|top_motifs=MYB:2.53448643644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.09697885565;YY1:1.74789832407;E2F1..5:1.67725788821;ELK1,4_GABP{A,B1}:1.62278557959;bHLH_family:1.53807417817;NKX2-2,8:1.36211876451;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.24403730038;FOXD3:1.20579459372;PITX1..3:1.14636676412;ZBTB16:1.07353848841;ZNF143:1.04908585311;CDX1,2,4:0.983836204798;FOXA2:0.93024409256;MYOD1:0.872109943771;STAT5{A,B}:0.862886508175;TEF:0.84711936078;SPIB:0.833759398034;AIRE:0.784112532051;ELF1,2,4:0.783965116936;BREu{core}:0.763387201497;CRX:0.728322605043;NR5A1,2:0.712303277924;GATA6:0.693530312022;NRF1:0.646966639347;HAND1,2:0.626155390462;PAX4:0.606949514711;AHR_ARNT_ARNT2:0.599655484455;SPI1:0.597152604556;GATA4:0.561816868121;CUX2:0.537809949481;TOPORS:0.503271437575;KLF4:0.487528179701;IKZF1:0.478746019339;DMAP1_NCOR{1,2}_SMARC:0.475296808156;FOXP3:0.468150538359;GCM1,2:0.451698046977;HOXA9_MEIS1:0.432094741074;ALX1:0.41741440779;FOX{I1,J2}:0.416184088403;NFY{A,B,C}:0.408993637422;TFDP1:0.405525652016;ESRRA:0.401355409025;IKZF2:0.397070633402;HES1:0.37226537805;POU1F1:0.366087624561;OCT4_SOX2{dimer}:0.364135196392;RXRA_VDR{dimer}:0.343396418097;ZEB1:0.32144288786;AR:0.313294560392;CEBPA,B_DDIT3:0.313254009056;PAX3,7:0.304258367548;HOX{A4,D4}:0.291943007613;RUNX1..3:0.291714498618;PAX8:0.279189889782;PAX2:0.259161089662;ETS1,2:0.228302372568;NKX3-1:0.22307168035;NFIL3:0.213170307155;NKX6-1,2:0.211021309231;T:0.206350545003;HOX{A6,A7,B6,B7}:0.202470357055;NKX3-2:0.198186942939;UFEwm:0.129955727359;NR6A1:0.125712333414;PPARG:0.125036741338;PRRX1,2:0.0943976088806;CREB1:0.0568439795742;NKX2-1,4:0.0338275977457;FOXM1:0.029894874408;ARID5B:-0.00488259396331;SNAI1..3:-0.0172543144277;HOX{A5,B5}:-0.0264244261902;HIF1A:-0.0299251459133;NANOG{mouse}:-0.0335491607073;HNF4A_NR2F1,2:-0.0338819027024;HLF:-0.0404755328749;ZNF238:-0.0414257242268;PBX1:-0.0468155484596;FOXP1:-0.0553773808893;GFI1:-0.0559932972154;HSF1,2:-0.0581667292417;RFX2..5_RFXANK_RFXAP:-0.0676769022958;ONECUT1,2:-0.0761448301445;RORA:-0.0831020156105;EVI1:-0.106309941981;POU3F1..4:-0.123538185218;SOX{8,9,10}:-0.126519192692;HNF1A:-0.164454666331;VSX1,2:-0.194707504482;ZNF384:-0.204203832839;REST:-0.214796470957;HBP1_HMGB_SSRP1_UBTF:-0.224188712803;POU2F1..3:-0.232327625898;ATF5_CREB3:-0.246944829281;ADNP_IRX_SIX_ZHX:-0.259415103248;NFKB1_REL_RELA:-0.280079279262;POU6F1:-0.283452085918;NANOG:-0.320101634618;POU5F1:-0.321797711382;ZNF423:-0.324084029761;RXR{A,B,G}:-0.330565542052;TLX2:-0.334228346101;PRDM1:-0.339958061644;FOXQ1:-0.340446286969;NFE2:-0.355459458793;NFE2L2:-0.402786269867;NFE2L1:-0.413184697039;TGIF1:-0.420627155887;MAFB:-0.436405155763;BPTF:-0.442611426745;NR1H4:-0.445047828943;RFX1:-0.452529188177;RBPJ:-0.475650404011;NFIX:-0.480491615939;ESR1:-0.484977215986;LEF1_TCF7_TCF7L1,2:-0.499392537532;CDC5L:-0.499854223885;FOXN1:-0.515778458588;FOSL2:-0.531357773647;IRF7:-0.547250555767;FOS_FOS{B,L1}_JUN{B,D}:-0.567588289122;ATF4:-0.572393826266;DBP:-0.605061767782;PAX5:-0.610082229554;BACH2:-0.625620171846;SPZ1:-0.637299019513;NKX2-3_NKX2-5:-0.645845200018;FOX{F1,F2,J1}:-0.645933000853;NHLH1,2:-0.651915626037;MYBL2:-0.65206191427;HMGA1,2:-0.653242148209;MEF2{A,B,C,D}:-0.660049315799;LHX3,4:-0.660375181852;PAX6:-0.68328368984;LMO2:-0.714587717883;ALX4:-0.720279726847;GZF1:-0.730215669141;IRF1,2:-0.735588603546;SOX17:-0.747758882725;PDX1:-0.781129473521;MYFfamily:-0.781543771569;XBP1:-0.793745489891;EN1,2:-0.848744643273;SRF:-0.879672586437;ZIC1..3:-0.900589315482;MTF1:-0.909262344989;ZBTB6:-0.924215886976;SOX5:-0.97296299506;EP300:-0.984705837493;SMAD1..7,9:-1.00383279538;SREBF1,2:-1.02745308375;ZFP161:-1.04342089572;ATF2:-1.05940504228;TAL1_TCF{3,4,12}:-1.09263158129;RREB1:-1.09992368766;FOXL1:-1.10551816597;FOXO1,3,4:-1.10803397651;STAT1,3:-1.11234068575;TP53:-1.14466112068;ZNF148:-1.1637505974;STAT2,4,6:-1.18816142071;MZF1:-1.20073024056;GTF2A1,2:-1.2011928174;HMX1:-1.20179794608;MTE{core}:-1.20913745091;TEAD1:-1.24869948317;TBP:-1.25363685588;SOX2:-1.28210908195;NR3C1:-1.2846304865;GTF2I:-1.28514593004;EBF1:-1.29739253889;HIC1:-1.30106369349;MED-1{core}:-1.33165125319;PAX1,9:-1.35752120903;TFAP2{A,C}:-1.38687644825;GFI1B:-1.40499649788;TLX1..3_NFIC{dimer}:-1.40706236355;FOX{D1,D2}:-1.42291833403;TBX4,5:-1.42728284215;NFATC1..3:-1.44187094853;ATF6:-1.53875234581;TFAP4:-1.60096238776;JUN:-1.63739372213;PATZ1:-1.89837378454;TFAP2B:-1.94052432405;EGR1..3:-1.97523590796;TFCP2:-2.03329912733;GLI1..3:-2.04843357697;MAZ:-2.29357014719;XCPE1{core}:-2.79825317008;SP1:-2.99306636254
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007701
|accession_numbers=DRX007806;DRR008678;DRZ000103;DRZ001488;CAGE
|library_id=CNhs13055
}}
}}

Revision as of 21:18, 16 October 2013


Name:acute myeloid leukemia (FAB M3) cell line:HL60
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
ageunknown
cell typemyeloid progenitor cell
cell lineHL60
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007701
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.237
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.56
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0951
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.244
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.17
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen1.02
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.173
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0632
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.499
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.27
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.065
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.557
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.143
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0.0632
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.211
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13055

Jaspar motifP-value
MA0002.20.0085
MA0003.10.943
MA0004.10.0106
MA0006.10.152
MA0007.10.927
MA0009.10.279
MA0014.10.676
MA0017.10.0319
MA0018.20.0178
MA0019.10.109
MA0024.10.0013
MA0025.10.996
MA0027.10.1
MA0028.10.00102
MA0029.10.396
MA0030.10.0176
MA0031.10.129
MA0035.20.231
MA0038.12.83812e-4
MA0039.20.0997
MA0040.10.21
MA0041.10.247
MA0042.10.482
MA0043.10.95
MA0046.10.0866
MA0047.20.992
MA0048.10.299
MA0050.14.34603e-4
MA0051.10.00239
MA0052.13.28593e-4
MA0055.10.112
MA0057.10.694
MA0058.10.00374
MA0059.15.10875e-6
MA0060.10.4
MA0061.10.592
MA0062.27.45034e-7
MA0065.20.00716
MA0066.10.156
MA0067.10.549
MA0068.10.00442
MA0069.10.979
MA0070.10.53
MA0071.10.0232
MA0072.10.647
MA0073.10.782
MA0074.10.921
MA0076.11.33856e-4
MA0077.10.419
MA0078.10.861
MA0079.20.075
MA0080.28.04026e-8
MA0081.10.00825
MA0083.16.45001e-4
MA0084.10.536
MA0087.10.169
MA0088.10.00302
MA0090.14.2372e-4
MA0091.10.445
MA0092.10.419
MA0093.10.00821
MA0099.20.00444
MA0100.10.0128
MA0101.10.486
MA0102.20.988
MA0103.10.114
MA0104.27.36815e-6
MA0105.10.00404
MA0106.10.349
MA0107.10.11
MA0108.24.73348e-14
MA0111.10.34
MA0112.20.0197
MA0113.10.777
MA0114.10.038
MA0115.10.0191
MA0116.11.02551e-5
MA0117.10.742
MA0119.10.34
MA0122.10.323
MA0124.10.876
MA0125.10.522
MA0131.10.528
MA0135.10.15
MA0136.16.9421e-12
MA0137.20.0291
MA0138.20.494
MA0139.10.3
MA0140.10.115
MA0141.10.00936
MA0142.10.0815
MA0143.10.926
MA0144.10.334
MA0145.10.663
MA0146.10.611
MA0147.19.8639e-7
MA0148.10.84
MA0149.10.0818
MA0150.10.827
MA0152.10.298
MA0153.10.0483
MA0154.10.0271
MA0155.10.868
MA0156.11.0531e-7
MA0157.10.521
MA0159.10.0964
MA0160.10.12
MA0162.10.828
MA0163.12.08836e-14
MA0164.10.901
MA0258.10.0516
MA0259.10.0127



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13055

Novel motifP-value
10.0139
100.00841
1000.262
1010.219
1020.69
1030.0643
1040.902
1050.387
1060.921
1070.497
1080.912
1090.0308
110.0644
1100.229
1110.00928
1120.574
1130.512
1140.00895
1150.826
1160.229
1170.0439
1180.0488
1190.692
120.94
1200.0418
1210.814
1220.845
1230.0192
1240.181
1250.0417
1260.592
1270.107
1280.93
1290.164
130.0437
1300.987
1310.424
1320.97
1330.219
1340.873
1350.758
1360.357
1370.423
1380.548
1390.00463
140.75
1400.0169
1410.0605
1420.42
1430.98
1440.634
1450.672
1460.728
1470.433
1480.0104
1490.402
150.0787
1500.934
1510.677
1520.156
1530.634
1540.835
1550.0181
1560.766
1570.711
1580.815
1590.507
160.475
1600.289
1610.0907
1620.541
1630.378
1640.0248
1650.663
1660.275
1670.021
1680.908
1690.396
170.716
180.286
190.719
20.669
200.449
210.122
220.877
230.299
240.184
250.182
260.052
270.526
280.904
290.0147
30.0784
300.0972
310.732
320.926
330.293
340.741
350.0819
360.0218
370.316
380.323
390.645
40.322
400.348
410.536
420.174
430.379
440.0461
450.51
460.0738
470.0317
480.0637
490.15
50.579
500.846
510.864
520.332
530.805
540.916
550.569
560.756
570.0478
580.227
590.521
60.501
600.699
610.176
620.0965
630.428
640.108
650.97
660.526
670.823
680.665
690.422
70.0978
700.179
710.0155
720.943
730.741
740.368
750.0102
760.318
770.69
780.0466
790.847
80.0475
800.437
810.181
820.418
830.436
840.378
850.94
860.44
870.645
880.644
890.473
90.941
900.0154
910.939
920.719
930.345
940.208
950.112
960.43
970.38
980.112
990.587



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13055


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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