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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007975
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0000763,CL:0002371,CL:0000255,CL:0000557
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0000763,CL:0002371,CL:0000255,CL:0000557
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000070;;FF:0000210
|is_a=EFO:0002091;;FF:0000070;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12519
|name=granulocyte macrophage progenitor, donor1
|name=granulocyte macrophage progenitor, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=MYB:2.37210722674;BREu{core}:2.31506718773;CREB1:2.26572817488;E2F1..5:1.86770770256;FOXN1:1.5739998797;TFDP1:1.30134838639;TFAP2B:1.26415759859;RFX2..5_RFXANK_RFXAP:1.25247743458;TFAP2{A,C}:1.23025495295;PAX5:1.20999880883;ZFP161:1.20058608087;FOXQ1:1.17559665404;EGR1..3:1.16637594272;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14418970285;PAX8:1.10560630179;ZNF148:1.09071048842;ATF4:1.0877580671;FOXA2:1.08038401114;PAX2:1.06774975715;HAND1,2:1.01411748615;HIF1A:1.00705200959;SPI1:0.963798191383;NANOG:0.931559718004;SP1:0.910303172053;SPIB:0.907425737078;TGIF1:0.876169095122;VSX1,2:0.870388946743;ELF1,2,4:0.860803155327;RXR{A,B,G}:0.801863867365;GATA6:0.792672128486;RUNX1..3:0.79230078145;HIC1:0.78832871328;RFX1:0.778887399117;ZNF143:0.770113672168;MTE{core}:0.678424394276;DMAP1_NCOR{1,2}_SMARC:0.676518145722;ETS1,2:0.641282922914;bHLH_family:0.634335875728;NFIL3:0.621885849959;NANOG{mouse}:0.611925501763;SOX2:0.591039775337;MYOD1:0.589899321227;ATF5_CREB3:0.584771604842;HBP1_HMGB_SSRP1_UBTF:0.570670695874;NHLH1,2:0.564850258483;CUX2:0.557982038227;XBP1:0.54999033377;NFY{A,B,C}:0.517740374813;EP300:0.49269808294;AR:0.465179628078;TEF:0.443474775471;XCPE1{core}:0.437436778517;POU1F1:0.425967222049;POU5F1:0.419956815812;MED-1{core}:0.414497895782;FOX{F1,F2,J1}:0.399633716232;RXRA_VDR{dimer}:0.351787315319;TLX2:0.342065848208;EBF1:0.318538898921;SREBF1,2:0.260060769096;FOX{D1,D2}:0.257694423942;STAT1,3:0.222207182546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220336659627;ESR1:0.201989258738;NFKB1_REL_RELA:0.193506539296;EN1,2:0.185100684385;CDX1,2,4:0.161843886007;NFATC1..3:0.157522998391;PAX6:0.154800279847;TAL1_TCF{3,4,12}:0.133073779514;NR5A1,2:0.122216610621;TFAP4:0.116475330856;LMO2:0.110695601676;IRF1,2:0.0857407124547;MYFfamily:0.0692515991514;MZF1:0.0638019586245;OCT4_SOX2{dimer}:0.0619664122462;FOSL2:0.0596188516436;STAT5{A,B}:0.0498124497592;RORA:0.043093230783;ELK1,4_GABP{A,B1}:0.0394213511159;CRX:0.0384242496707;NFIX:0.0311645808186;ZEB1:0.0291650664598;HNF1A:0.00958541233001;NRF1:0.00141462834536;LEF1_TCF7_TCF7L1,2:-0.00116044012662;MAFB:-0.00957429347741;HLF:-0.0137188642525;GLI1..3:-0.0206008743685;IRF7:-0.033545100646;GCM1,2:-0.0378355098103;FOX{I1,J2}:-0.0402046618728;FOXP3:-0.0489682347928;POU3F1..4:-0.0611251741027;PRRX1,2:-0.0688523071923;CEBPA,B_DDIT3:-0.0969138939413;YY1:-0.108508475664;MEF2{A,B,C,D}:-0.123023161814;POU2F1..3:-0.134417407619;ZNF238:-0.15279727313;SOX17:-0.155944405327;MAZ:-0.159209581226;TBX4,5:-0.16631509561;PAX3,7:-0.178921530831;REST:-0.191036738647;ALX1:-0.196541353889;FOS_FOS{B,L1}_JUN{B,D}:-0.208564807831;SOX5:-0.219083636442;HES1:-0.242456963328;ONECUT1,2:-0.249472095636;PPARG:-0.253094990276;PBX1:-0.259093993759;SOX{8,9,10}:-0.26828572781;MTF1:-0.276043528541;BACH2:-0.330914406245;AHR_ARNT_ARNT2:-0.331789966744;HNF4A_NR2F1,2:-0.360181812183;PATZ1:-0.368328615481;FOXO1,3,4:-0.397223016538;NFE2:-0.413006045511;T:-0.417184949369;STAT2,4,6:-0.436534692187;ZBTB6:-0.4456114754;ATF2:-0.447933936023;RBPJ:-0.478731429987;NKX2-3_NKX2-5:-0.479802525423;NKX2-1,4:-0.48335236151;ESRRA:-0.493530426333;ATF6:-0.500252481305;NR3C1:-0.511132435723;HOX{A6,A7,B6,B7}:-0.521729303032;GTF2I:-0.588692079175;GZF1:-0.589356543624;HMX1:-0.618488841155;GTF2A1,2:-0.64094830583;NFE2L2:-0.671270836569;JUN:-0.67742259678;BPTF:-0.688904142433;MYBL2:-0.754562822072;GFI1:-0.770969232381;SNAI1..3:-0.802392365267;SPZ1:-0.805829752023;HOX{A4,D4}:-0.849711373775;NKX2-2,8:-0.863155167664;CDC5L:-0.8761243839;HOXA9_MEIS1:-0.929407720264;DBP:-0.92993343537;LHX3,4:-0.938027372126;PAX4:-0.939612428155;IKZF2:-0.954538512514;PRDM1:-0.957085475007;SRF:-1.00702099029;TFCP2:-1.01639152856;PDX1:-1.03228862211;ADNP_IRX_SIX_ZHX:-1.04394218809;ZIC1..3:-1.09419151092;RREB1:-1.10321995296;ZNF423:-1.10469993676;HOX{A5,B5}:-1.11565400296;GATA4:-1.13838245099;GFI1B:-1.16287732177;HSF1,2:-1.20151446254;TP53:-1.20773985672;EVI1:-1.22255998637;TEAD1:-1.22732853945;SMAD1..7,9:-1.23614204214;POU6F1:-1.26758847829;TLX1..3_NFIC{dimer}:-1.26920173938;FOXP1:-1.31029605136;AIRE:-1.313951783;FOXD3:-1.31407796105;KLF4:-1.33578776748;NKX3-1:-1.36004419784;ALX4:-1.39536165936;TOPORS:-1.40562238985;ARID5B:-1.44813382829;PITX1..3:-1.47067687785;NR1H4:-1.47527795381;NFE2L1:-1.49225419664;NKX3-2:-1.55135765738;IKZF1:-1.55619055178;NKX6-1,2:-1.58642097857;UFEwm:-1.58988511127;NR6A1:-1.64542316887;HMGA1,2:-1.69604707546;ZNF384:-1.80809707785;FOXM1:-1.84733571926;FOXL1:-1.87354571692;ZBTB16:-2.15184482388;TBP:-2.15310855688;PAX1,9:-2.61663927682
|top_motifs=MYB:2.37210722674;BREu{core}:2.31506718773;CREB1:2.26572817488;E2F1..5:1.86770770256;FOXN1:1.5739998797;TFDP1:1.30134838639;TFAP2B:1.26415759859;RFX2..5_RFXANK_RFXAP:1.25247743458;TFAP2{A,C}:1.23025495295;PAX5:1.20999880883;ZFP161:1.20058608087;FOXQ1:1.17559665404;EGR1..3:1.16637594272;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.14418970285;PAX8:1.10560630179;ZNF148:1.09071048842;ATF4:1.0877580671;FOXA2:1.08038401114;PAX2:1.06774975715;HAND1,2:1.01411748615;HIF1A:1.00705200959;SPI1:0.963798191383;NANOG:0.931559718004;SP1:0.910303172053;SPIB:0.907425737078;TGIF1:0.876169095122;VSX1,2:0.870388946743;ELF1,2,4:0.860803155327;RXR{A,B,G}:0.801863867365;GATA6:0.792672128486;RUNX1..3:0.79230078145;HIC1:0.78832871328;RFX1:0.778887399117;ZNF143:0.770113672168;MTE{core}:0.678424394276;DMAP1_NCOR{1,2}_SMARC:0.676518145722;ETS1,2:0.641282922914;bHLH_family:0.634335875728;NFIL3:0.621885849959;NANOG{mouse}:0.611925501763;SOX2:0.591039775337;MYOD1:0.589899321227;ATF5_CREB3:0.584771604842;HBP1_HMGB_SSRP1_UBTF:0.570670695874;NHLH1,2:0.564850258483;CUX2:0.557982038227;XBP1:0.54999033377;NFY{A,B,C}:0.517740374813;EP300:0.49269808294;AR:0.465179628078;TEF:0.443474775471;XCPE1{core}:0.437436778517;POU1F1:0.425967222049;POU5F1:0.419956815812;MED-1{core}:0.414497895782;FOX{F1,F2,J1}:0.399633716232;RXRA_VDR{dimer}:0.351787315319;TLX2:0.342065848208;EBF1:0.318538898921;SREBF1,2:0.260060769096;FOX{D1,D2}:0.257694423942;STAT1,3:0.222207182546;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.220336659627;ESR1:0.201989258738;NFKB1_REL_RELA:0.193506539296;EN1,2:0.185100684385;CDX1,2,4:0.161843886007;NFATC1..3:0.157522998391;PAX6:0.154800279847;TAL1_TCF{3,4,12}:0.133073779514;NR5A1,2:0.122216610621;TFAP4:0.116475330856;LMO2:0.110695601676;IRF1,2:0.0857407124547;MYFfamily:0.0692515991514;MZF1:0.0638019586245;OCT4_SOX2{dimer}:0.0619664122462;FOSL2:0.0596188516436;STAT5{A,B}:0.0498124497592;RORA:0.043093230783;ELK1,4_GABP{A,B1}:0.0394213511159;CRX:0.0384242496707;NFIX:0.0311645808186;ZEB1:0.0291650664598;HNF1A:0.00958541233001;NRF1:0.00141462834536;LEF1_TCF7_TCF7L1,2:-0.00116044012662;MAFB:-0.00957429347741;HLF:-0.0137188642525;GLI1..3:-0.0206008743685;IRF7:-0.033545100646;GCM1,2:-0.0378355098103;FOX{I1,J2}:-0.0402046618728;FOXP3:-0.0489682347928;POU3F1..4:-0.0611251741027;PRRX1,2:-0.0688523071923;CEBPA,B_DDIT3:-0.0969138939413;YY1:-0.108508475664;MEF2{A,B,C,D}:-0.123023161814;POU2F1..3:-0.134417407619;ZNF238:-0.15279727313;SOX17:-0.155944405327;MAZ:-0.159209581226;TBX4,5:-0.16631509561;PAX3,7:-0.178921530831;REST:-0.191036738647;ALX1:-0.196541353889;FOS_FOS{B,L1}_JUN{B,D}:-0.208564807831;SOX5:-0.219083636442;HES1:-0.242456963328;ONECUT1,2:-0.249472095636;PPARG:-0.253094990276;PBX1:-0.259093993759;SOX{8,9,10}:-0.26828572781;MTF1:-0.276043528541;BACH2:-0.330914406245;AHR_ARNT_ARNT2:-0.331789966744;HNF4A_NR2F1,2:-0.360181812183;PATZ1:-0.368328615481;FOXO1,3,4:-0.397223016538;NFE2:-0.413006045511;T:-0.417184949369;STAT2,4,6:-0.436534692187;ZBTB6:-0.4456114754;ATF2:-0.447933936023;RBPJ:-0.478731429987;NKX2-3_NKX2-5:-0.479802525423;NKX2-1,4:-0.48335236151;ESRRA:-0.493530426333;ATF6:-0.500252481305;NR3C1:-0.511132435723;HOX{A6,A7,B6,B7}:-0.521729303032;GTF2I:-0.588692079175;GZF1:-0.589356543624;HMX1:-0.618488841155;GTF2A1,2:-0.64094830583;NFE2L2:-0.671270836569;JUN:-0.67742259678;BPTF:-0.688904142433;MYBL2:-0.754562822072;GFI1:-0.770969232381;SNAI1..3:-0.802392365267;SPZ1:-0.805829752023;HOX{A4,D4}:-0.849711373775;NKX2-2,8:-0.863155167664;CDC5L:-0.8761243839;HOXA9_MEIS1:-0.929407720264;DBP:-0.92993343537;LHX3,4:-0.938027372126;PAX4:-0.939612428155;IKZF2:-0.954538512514;PRDM1:-0.957085475007;SRF:-1.00702099029;TFCP2:-1.01639152856;PDX1:-1.03228862211;ADNP_IRX_SIX_ZHX:-1.04394218809;ZIC1..3:-1.09419151092;RREB1:-1.10321995296;ZNF423:-1.10469993676;HOX{A5,B5}:-1.11565400296;GATA4:-1.13838245099;GFI1B:-1.16287732177;HSF1,2:-1.20151446254;TP53:-1.20773985672;EVI1:-1.22255998637;TEAD1:-1.22732853945;SMAD1..7,9:-1.23614204214;POU6F1:-1.26758847829;TLX1..3_NFIC{dimer}:-1.26920173938;FOXP1:-1.31029605136;AIRE:-1.313951783;FOXD3:-1.31407796105;KLF4:-1.33578776748;NKX3-1:-1.36004419784;ALX4:-1.39536165936;TOPORS:-1.40562238985;ARID5B:-1.44813382829;PITX1..3:-1.47067687785;NR1H4:-1.47527795381;NFE2L1:-1.49225419664;NKX3-2:-1.55135765738;IKZF1:-1.55619055178;NKX6-1,2:-1.58642097857;UFEwm:-1.58988511127;NR6A1:-1.64542316887;HMGA1,2:-1.69604707546;ZNF384:-1.80809707785;FOXM1:-1.84733571926;FOXL1:-1.87354571692;ZBTB16:-2.15184482388;TBP:-2.15310855688;PAX1,9:-2.61663927682
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007975
|accession_numbers=DRX008082;DRR008954;DRZ000379;DRZ001764;CAGE
|library_id=CNhs12519
}}
}}

Revision as of 23:22, 16 October 2013


Name:granulocyte macrophage progenitor, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typegranulocyte macrophage progenitor
cell lineNA
companyNA
collaborationLennartsson
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007975
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.447
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.3
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.474
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-1.049
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.205
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.298
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.868
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0888
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.272
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.516
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.262
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.357
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.551
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12519

Jaspar motifP-value
MA0002.20.111
MA0003.10.956
MA0004.10.209
MA0006.10.333
MA0007.10.606
MA0009.10.749
MA0014.10.975
MA0017.10.901
MA0018.24.97156e-5
MA0019.10.467
MA0024.11.84111e-6
MA0025.12.28722e-4
MA0027.10.107
MA0028.10.331
MA0029.10.369
MA0030.10.0731
MA0031.10.236
MA0035.20.0752
MA0038.10.88
MA0039.20.523
MA0040.10.0654
MA0041.10.0858
MA0042.10.111
MA0043.13.89389e-6
MA0046.10.0104
MA0047.20.0915
MA0048.10.883
MA0050.10.138
MA0051.10.101
MA0052.10.831
MA0055.10.592
MA0057.10.661
MA0058.10.254
MA0059.10.71
MA0060.11.00921e-4
MA0061.10.136
MA0062.23.68118e-6
MA0065.20.0852
MA0066.10.0141
MA0067.10.0032
MA0068.10.118
MA0069.10.115
MA0070.10.0577
MA0071.10.891
MA0072.10.781
MA0073.10.989
MA0074.10.313
MA0076.10.0284
MA0077.10.837
MA0078.10.673
MA0079.20.0308
MA0080.24.37997e-11
MA0081.14.73384e-4
MA0083.10.0459
MA0084.10.838
MA0087.10.968
MA0088.10.324
MA0090.11.76956e-4
MA0091.10.832
MA0092.10.112
MA0093.10.162
MA0099.20.21
MA0100.11.33188e-4
MA0101.10.918
MA0102.27.49852e-4
MA0103.10.31
MA0104.20.207
MA0105.15.40494e-5
MA0106.10.0806
MA0107.10.478
MA0108.22.50496e-5
MA0111.10.282
MA0112.29.40551e-5
MA0113.10.655
MA0114.10.376
MA0115.10.414
MA0116.10.0109
MA0117.10.418
MA0119.10.0282
MA0122.10.137
MA0124.10.0965
MA0125.10.868
MA0131.10.279
MA0135.10.0277
MA0136.11.90476e-9
MA0137.20.847
MA0138.20.175
MA0139.10.0984
MA0140.10.411
MA0141.10.118
MA0142.10.83
MA0143.10.901
MA0144.10.931
MA0145.10.0723
MA0146.10.571
MA0147.10.361
MA0148.10.712
MA0149.10.944
MA0150.10.287
MA0152.10.0693
MA0153.10.571
MA0154.10.0714
MA0155.10.861
MA0156.14.87411e-7
MA0157.10.824
MA0159.10.0202
MA0160.10.564
MA0162.10.133
MA0163.10.0127
MA0164.10.982
MA0258.10.00602
MA0259.10.594



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12519

Novel motifP-value
10.0246
100.552
1000.194
1010.797
1020.831
1030.797
1040.941
1050.981
1060.551
1070.246
1080.283
1090.359
110.111
1100.0773
1110.194
1120.644
1130.508
1140.172
1150.279
1160.134
1170.588
1180.687
1190.0508
120.745
1200.308
1210.954
1220.617
1230.0652
1240.341
1250.178
1260.415
1270.21
1280.939
1290.46
130.319
1300.542
1310.0654
1320.222
1330.636
1340.245
1350.303
1360.319
1370.0137
1380.605
1390.43
140.983
1400.929
1410.738
1420.724
1430.951
1440.474
1450.145
1460.767
1470.146
1480.0912
1490.252
150.857
1500.74
1510.618
1520.765
1530.184
1540.452
1550.0172
1560.567
1570.3
1580.251
1590.664
160.0359
1600.0865
1610.821
1620.221
1630.862
1640.616
1650.44
1660.815
1670.43
1680.395
1690.00503
170.213
180.357
190.0482
20.762
200.984
210.169
220.891
230.173
240.49
250.923
260.862
270.876
280.812
290.913
30.0727
300.963
310.523
321.95615e-4
330.354
340.615
350.33
360.345
370.212
380.454
390.329
40.695
400.234
410.574
420.411
430.126
440.0163
450.761
460.0955
470.144
480.214
490.356
50.457
500.832
510.649
520.963
530.878
540.806
550.533
560.304
570.155
580.573
590.284
60.288
600.718
610.689
620.449
630.1
640.192
650.0957
660.547
670.6
680.581
690.167
70.838
700.0176
710.0898
720.898
730.451
740.696
750.472
760.491
770.062
780.172
790.049
80.049
800.265
810.274
820.0469
830.524
840.979
850.0885
860.742
870.122
880.12
890.0135
90.723
900.658
910.344
920.0129
930.878
940.397
950.925
960.342
970.892
980.395
990.0305



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12519


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002032 (hematopoietic oligopotent progenitor cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000557 (granulocyte monocyte progenitor cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000070 (granulocyte macrophage progenitor cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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