Personal tools

FF:11796-124C5: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007954
|DRA_sample_Accession=CAGE@DRS007954
|accession_numbers=CAGE;DRX008061;DRR008933;DRZ000358;DRZ001743
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs13235
|library_ids=CNhs13235
|library_ids=CNhs13235
|name=CD4+CD25+CD45RA+ naive regulatory T cells, donor2
|name=CD4+CD25+CD45RA+ naive regulatory T cells, donor2
Line 86: Line 88:
|top_motifs=PAX3,7:3.86592565902;CREB1:3.38880513386;FOX{D1,D2}:3.25198719333;FOXO1,3,4:2.49860733644;ATF5_CREB3:2.45133187907;FOX{F1,F2,J1}:2.43631066626;BPTF:2.38570842156;RUNX1..3:2.38461077319;CDX1,2,4:2.24643128489;ELF1,2,4:2.24407376505;PBX1:2.24098528978;ATF4:2.19874094409;ATF2:1.96206911804;ELK1,4_GABP{A,B1}:1.93588836796;TLX2:1.92096285827;PDX1:1.88134301297;DMAP1_NCOR{1,2}_SMARC:1.8128988458;HIF1A:1.79715873397;ETS1,2:1.78351889412;PAX6:1.78274149945;FOXN1:1.58266768368;STAT1,3:1.47439356325;RORA:1.4560303337;RFX2..5_RFXANK_RFXAP:1.4176664171;HMX1:1.39707434185;FOX{I1,J2}:1.38120225105;JUN:1.24815934622;PAX2:1.18989127174;ZBTB16:1.17494164262;SPI1:1.11064816437;LEF1_TCF7_TCF7L1,2:1.09535539088;ATF6:1.08815042738;BREu{core}:1.0253038292;NKX6-1,2:0.982456316346;TGIF1:0.952811173812;IRF1,2:0.930645589808;AHR_ARNT_ARNT2:0.860356936339;SPIB:0.856283622404;CRX:0.832542288158;GATA6:0.814569465966;ZEB1:0.745600066616;CUX2:0.719239038812;RFX1:0.716373425227;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.709640848342;SOX2:0.685916059942;FOXP1:0.672700286685;NFATC1..3:0.662285460722;PAX4:0.639537114232;YY1:0.603325462139;SPZ1:0.597821933425;NFIL3:0.595436549139;PITX1..3:0.594272285014;NANOG{mouse}:0.549144759891;NFIX:0.499621578327;FOXQ1:0.453135889953;SNAI1..3:0.429739271202;SOX5:0.417365557013;POU2F1..3:0.366766882483;IKZF2:0.352475422611;LMO2:0.337881853265;T:0.316089271931;VSX1,2:0.313782934857;NFKB1_REL_RELA:0.26657270058;MAFB:0.248240665287;MYOD1:0.205790334653;NRF1:0.162262257192;POU1F1:0.158186043006;SREBF1,2:0.153654418747;HAND1,2:0.145317711007;HES1:0.144182046664;NKX2-1,4:0.127079258377;AR:0.0933371273894;NKX3-1:0.0699806650307;NANOG:0.0459545529473;EP300:0.0451253174674;NKX2-2,8:0.0400256821143;IRF7:0.0347339870554;NR5A1,2:0.0186675150883;HOX{A6,A7,B6,B7}:-0.0141450187514;MYB:-0.0170657931118;OCT4_SOX2{dimer}:-0.0179153518612;HBP1_HMGB_SSRP1_UBTF:-0.0358514263316;NFY{A,B,C}:-0.0561067280284;FOXA2:-0.0608791947436;STAT5{A,B}:-0.0609065970753;EVI1:-0.121600444259;TAL1_TCF{3,4,12}:-0.148400060152;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.153045505958;TBX4,5:-0.218207171236;ZNF143:-0.233926707561;RBPJ:-0.286595911408;FOSL2:-0.289684191301;GFI1:-0.289842862395;NHLH1,2:-0.294645096022;NFE2L1:-0.338905443173;E2F1..5:-0.359359907175;HNF1A:-0.363274955972;EGR1..3:-0.373214337427;HNF4A_NR2F1,2:-0.381210900196;STAT2,4,6:-0.403249151257;HLF:-0.411676765862;PAX5:-0.440280323969;AIRE:-0.458974940369;PRRX1,2:-0.46208521809;DBP:-0.50632330206;ALX1:-0.511128383369;SMAD1..7,9:-0.530755982883;ALX4:-0.541503158061;ZNF384:-0.560978675745;FOS_FOS{B,L1}_JUN{B,D}:-0.565828292085;TOPORS:-0.575078379694;ADNP_IRX_SIX_ZHX:-0.620154033873;RREB1:-0.646803084525;CEBPA,B_DDIT3:-0.65606820872;GCM1,2:-0.665223595101;BACH2:-0.68134732679;MEF2{A,B,C,D}:-0.690277686168;bHLH_family:-0.759577779606;NFE2:-0.76114835489;FOXL1:-0.77042168756;PPARG:-0.798978075553;FOXM1:-0.853435612915;GLI1..3:-0.862246632315;ZNF148:-0.863817392021;TEF:-0.8839873908;SOX{8,9,10}:-0.887799392522;ZFP161:-0.889696805828;NR6A1:-0.920583918886;ONECUT1,2:-0.933254144613;GFI1B:-0.942076314078;MYFfamily:-0.95492505057;SRF:-0.99430222625;PRDM1:-0.994457010319;REST:-1.00647720703;FOXP3:-1.01743483689;PAX8:-1.03345644582;ARID5B:-1.03800968826;MED-1{core}:-1.08567513708;FOXD3:-1.09142335216;HMGA1,2:-1.10231286211;MTF1:-1.12704309822;LHX3,4:-1.1423101413;ZNF238:-1.1467647317;SOX17:-1.16304801513;RXRA_VDR{dimer}:-1.18799366409;POU3F1..4:-1.20729126461;GATA4:-1.24116421762;XBP1:-1.26709452125;MYBL2:-1.27538147798;NKX2-3_NKX2-5:-1.30368550392;MZF1:-1.31377272251;UFEwm:-1.32828097146;HOXA9_MEIS1:-1.33045810806;HOX{A5,B5}:-1.3365219894;TP53:-1.34372583825;POU6F1:-1.36267084057;ZBTB6:-1.36734294851;ESR1:-1.36815652886;NFE2L2:-1.38890590133;POU5F1:-1.42852149122;MTE{core}:-1.48093767962;EBF1:-1.5004116659;SP1:-1.50260058737;NR3C1:-1.50967121296;NR1H4:-1.51633752992;XCPE1{core}:-1.54033038873;PATZ1:-1.56103503115;TFAP4:-1.59178927011;MAZ:-1.59680442103;TBP:-1.61098231167;CDC5L:-1.61203279164;EN1,2:-1.63232473082;GTF2I:-1.64371417253;HIC1:-1.65247899472;ESRRA:-1.66017631442;RXR{A,B,G}:-1.67533984936;TFCP2:-1.69749280017;HOX{A4,D4}:-1.70142203827;ZNF423:-1.70356931582;TEAD1:-1.73177954969;TLX1..3_NFIC{dimer}:-1.7397152854;TFAP2B:-1.74214319186;GTF2A1,2:-1.75878048063;KLF4:-1.805848423;PAX1,9:-1.81872979287;HSF1,2:-1.8571312855;TFAP2{A,C}:-1.86893416408;NKX3-2:-1.89059984681;GZF1:-1.89279487311;TFDP1:-1.98885104213;ZIC1..3:-2.04131538361;IKZF1:-3.11912366106
|top_motifs=PAX3,7:3.86592565902;CREB1:3.38880513386;FOX{D1,D2}:3.25198719333;FOXO1,3,4:2.49860733644;ATF5_CREB3:2.45133187907;FOX{F1,F2,J1}:2.43631066626;BPTF:2.38570842156;RUNX1..3:2.38461077319;CDX1,2,4:2.24643128489;ELF1,2,4:2.24407376505;PBX1:2.24098528978;ATF4:2.19874094409;ATF2:1.96206911804;ELK1,4_GABP{A,B1}:1.93588836796;TLX2:1.92096285827;PDX1:1.88134301297;DMAP1_NCOR{1,2}_SMARC:1.8128988458;HIF1A:1.79715873397;ETS1,2:1.78351889412;PAX6:1.78274149945;FOXN1:1.58266768368;STAT1,3:1.47439356325;RORA:1.4560303337;RFX2..5_RFXANK_RFXAP:1.4176664171;HMX1:1.39707434185;FOX{I1,J2}:1.38120225105;JUN:1.24815934622;PAX2:1.18989127174;ZBTB16:1.17494164262;SPI1:1.11064816437;LEF1_TCF7_TCF7L1,2:1.09535539088;ATF6:1.08815042738;BREu{core}:1.0253038292;NKX6-1,2:0.982456316346;TGIF1:0.952811173812;IRF1,2:0.930645589808;AHR_ARNT_ARNT2:0.860356936339;SPIB:0.856283622404;CRX:0.832542288158;GATA6:0.814569465966;ZEB1:0.745600066616;CUX2:0.719239038812;RFX1:0.716373425227;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.709640848342;SOX2:0.685916059942;FOXP1:0.672700286685;NFATC1..3:0.662285460722;PAX4:0.639537114232;YY1:0.603325462139;SPZ1:0.597821933425;NFIL3:0.595436549139;PITX1..3:0.594272285014;NANOG{mouse}:0.549144759891;NFIX:0.499621578327;FOXQ1:0.453135889953;SNAI1..3:0.429739271202;SOX5:0.417365557013;POU2F1..3:0.366766882483;IKZF2:0.352475422611;LMO2:0.337881853265;T:0.316089271931;VSX1,2:0.313782934857;NFKB1_REL_RELA:0.26657270058;MAFB:0.248240665287;MYOD1:0.205790334653;NRF1:0.162262257192;POU1F1:0.158186043006;SREBF1,2:0.153654418747;HAND1,2:0.145317711007;HES1:0.144182046664;NKX2-1,4:0.127079258377;AR:0.0933371273894;NKX3-1:0.0699806650307;NANOG:0.0459545529473;EP300:0.0451253174674;NKX2-2,8:0.0400256821143;IRF7:0.0347339870554;NR5A1,2:0.0186675150883;HOX{A6,A7,B6,B7}:-0.0141450187514;MYB:-0.0170657931118;OCT4_SOX2{dimer}:-0.0179153518612;HBP1_HMGB_SSRP1_UBTF:-0.0358514263316;NFY{A,B,C}:-0.0561067280284;FOXA2:-0.0608791947436;STAT5{A,B}:-0.0609065970753;EVI1:-0.121600444259;TAL1_TCF{3,4,12}:-0.148400060152;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.153045505958;TBX4,5:-0.218207171236;ZNF143:-0.233926707561;RBPJ:-0.286595911408;FOSL2:-0.289684191301;GFI1:-0.289842862395;NHLH1,2:-0.294645096022;NFE2L1:-0.338905443173;E2F1..5:-0.359359907175;HNF1A:-0.363274955972;EGR1..3:-0.373214337427;HNF4A_NR2F1,2:-0.381210900196;STAT2,4,6:-0.403249151257;HLF:-0.411676765862;PAX5:-0.440280323969;AIRE:-0.458974940369;PRRX1,2:-0.46208521809;DBP:-0.50632330206;ALX1:-0.511128383369;SMAD1..7,9:-0.530755982883;ALX4:-0.541503158061;ZNF384:-0.560978675745;FOS_FOS{B,L1}_JUN{B,D}:-0.565828292085;TOPORS:-0.575078379694;ADNP_IRX_SIX_ZHX:-0.620154033873;RREB1:-0.646803084525;CEBPA,B_DDIT3:-0.65606820872;GCM1,2:-0.665223595101;BACH2:-0.68134732679;MEF2{A,B,C,D}:-0.690277686168;bHLH_family:-0.759577779606;NFE2:-0.76114835489;FOXL1:-0.77042168756;PPARG:-0.798978075553;FOXM1:-0.853435612915;GLI1..3:-0.862246632315;ZNF148:-0.863817392021;TEF:-0.8839873908;SOX{8,9,10}:-0.887799392522;ZFP161:-0.889696805828;NR6A1:-0.920583918886;ONECUT1,2:-0.933254144613;GFI1B:-0.942076314078;MYFfamily:-0.95492505057;SRF:-0.99430222625;PRDM1:-0.994457010319;REST:-1.00647720703;FOXP3:-1.01743483689;PAX8:-1.03345644582;ARID5B:-1.03800968826;MED-1{core}:-1.08567513708;FOXD3:-1.09142335216;HMGA1,2:-1.10231286211;MTF1:-1.12704309822;LHX3,4:-1.1423101413;ZNF238:-1.1467647317;SOX17:-1.16304801513;RXRA_VDR{dimer}:-1.18799366409;POU3F1..4:-1.20729126461;GATA4:-1.24116421762;XBP1:-1.26709452125;MYBL2:-1.27538147798;NKX2-3_NKX2-5:-1.30368550392;MZF1:-1.31377272251;UFEwm:-1.32828097146;HOXA9_MEIS1:-1.33045810806;HOX{A5,B5}:-1.3365219894;TP53:-1.34372583825;POU6F1:-1.36267084057;ZBTB6:-1.36734294851;ESR1:-1.36815652886;NFE2L2:-1.38890590133;POU5F1:-1.42852149122;MTE{core}:-1.48093767962;EBF1:-1.5004116659;SP1:-1.50260058737;NR3C1:-1.50967121296;NR1H4:-1.51633752992;XCPE1{core}:-1.54033038873;PATZ1:-1.56103503115;TFAP4:-1.59178927011;MAZ:-1.59680442103;TBP:-1.61098231167;CDC5L:-1.61203279164;EN1,2:-1.63232473082;GTF2I:-1.64371417253;HIC1:-1.65247899472;ESRRA:-1.66017631442;RXR{A,B,G}:-1.67533984936;TFCP2:-1.69749280017;HOX{A4,D4}:-1.70142203827;ZNF423:-1.70356931582;TEAD1:-1.73177954969;TLX1..3_NFIC{dimer}:-1.7397152854;TFAP2B:-1.74214319186;GTF2A1,2:-1.75878048063;KLF4:-1.805848423;PAX1,9:-1.81872979287;HSF1,2:-1.8571312855;TFAP2{A,C}:-1.86893416408;NKX3-2:-1.89059984681;GZF1:-1.89279487311;TFDP1:-1.98885104213;ZIC1..3:-2.04131538361;IKZF1:-3.11912366106
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007954
|accession_numbers=DRX008061;DRR008933;DRZ000358;DRZ001743;CAGE
|library_id=CNhs13235
}}
}}

Revision as of 14:58, 17 October 2013


Name:CD4+CD25+CD45RA+ naive regulatory T cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13235
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number21
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007954
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13235 CAGE DRX008061 DRR008933
Accession ID Hg19

Library idBAMCTSS
CNhs13235 DRZ000358 DRZ001743
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.584
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.26
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.289
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.527
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.168
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.289
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.748
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.432
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.882
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.291
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.168
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.527
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.882
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.168
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.23
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.49
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.289
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.168
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.855
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.55
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.882
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.635
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.595
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.509
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.882
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.886
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.289
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13235

Jaspar motifP-value
MA0002.22.78023e-4
MA0003.10.559
MA0004.10.53
MA0006.10.0515
MA0007.10.977
MA0009.10.287
MA0014.10.372
MA0017.10.583
MA0018.25.8688e-9
MA0019.10.68
MA0024.10.659
MA0025.10.203
MA0027.10.34
MA0028.16.4926e-7
MA0029.10.568
MA0030.10.00335
MA0031.12.13902e-5
MA0035.20.151
MA0038.10.31
MA0039.20.821
MA0040.10.996
MA0041.10.419
MA0042.10.878
MA0043.10.0042
MA0046.10.558
MA0047.20.0638
MA0048.10.824
MA0050.11.77361e-4
MA0051.10.0262
MA0052.10.028
MA0055.10.264
MA0057.10.544
MA0058.10.459
MA0059.10.412
MA0060.10.689
MA0061.10.0817
MA0062.23.30555e-19
MA0065.20.193
MA0066.10.417
MA0067.10.0187
MA0068.10.826
MA0069.10.802
MA0070.10.819
MA0071.10.864
MA0072.10.317
MA0073.10.977
MA0074.10.173
MA0076.13.15179e-10
MA0077.10.0122
MA0078.10.9
MA0079.20.372
MA0080.21.71574e-9
MA0081.10.00893
MA0083.10.0232
MA0084.10.227
MA0087.10.813
MA0088.10.239
MA0090.16.68858e-4
MA0091.10.55
MA0092.10.904
MA0093.10.6
MA0099.24.44753e-5
MA0100.10.575
MA0101.10.969
MA0102.20.404
MA0103.10.155
MA0104.20.0573
MA0105.10.00152
MA0106.10.228
MA0107.10.754
MA0108.21.47548e-6
MA0111.10.386
MA0112.20.799
MA0113.10.863
MA0114.10.658
MA0115.10.857
MA0116.10.00622
MA0117.10.0608
MA0119.10.423
MA0122.10.41
MA0124.10.465
MA0125.10.105
MA0131.10.0614
MA0135.10.219
MA0136.13.33608e-21
MA0137.20.684
MA0138.20.321
MA0139.10.0949
MA0140.10.172
MA0141.10.48
MA0142.10.138
MA0143.10.215
MA0144.10.69
MA0145.10.0549
MA0146.10.602
MA0147.10.0619
MA0148.10.196
MA0149.10.151
MA0150.10.311
MA0152.10.0179
MA0153.10.356
MA0154.10.378
MA0155.10.329
MA0156.18.1356e-19
MA0157.18.34363e-5
MA0159.10.44
MA0160.10.944
MA0162.10.432
MA0163.13.18303e-6
MA0164.10.639
MA0258.10.703
MA0259.10.0898



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13235

Novel motifP-value
10.466
100.0143
1000.472
1010.226
1020.918
1030.624
1040.815
1050.289
1060.962
1070.00273
1080.503
1090.185
110.28
1100.802
1110.828
1120.952
1130.609
1140.595
1150.194
1160.159
1170.00229
1180.229
1190.303
120.726
1200.939
1210.862
1220.77
1230.00466
1240.593
1250.249
1260.758
1270.768
1280.291
1290.936
130.455
1300.524
1310.501
1320.367
1330.652
1340.652
1350.945
1360.919
1370.115
1380.482
1390.0596
140.67
1400.184
1410.623
1420.217
1430.0123
1440.807
1450.656
1460.589
1470.0184
1480.343
1490.406
150.223
1500.911
1510.657
1520.235
1530.68
1540.466
1550.0127
1560.895
1570.47
1580.00352
1590.463
160.512
1600.455
1610.99
1620.0374
1630.36
1640.121
1650.826
1660.245
1670.139
1680.754
1690.309
170.6
180.708
190.0923
20.351
200.221
210.699
220.451
230.385
240.573
250.0833
260.754
270.755
280.594
290.0199
30.273
300.127
310.631
320.0441
330.138
340.344
350.302
360.0187
370.306
380.934
390.261
40.964
400.47
410.107
420.184
430.513
440.983
450.209
460.628
470.225
480.451
490.195
50.483
500.537
510.957
520.256
530.544
540.932
550.767
560.914
570.75
580.113
590.668
60.929
600.76
610.0748
620.144
630.981
640.567
650.788
660.846
670.91
680.436
690.549
70.351
700.154
710.115
720.15
730.822
740.54
750.0065
760.0649
770.0223
780.301
790.475
80.485
800.0118
810.561
820.253
830.771
840.555
850.332
860.206
870.573
880.997
890.0734
90.979
900.151
910.856
920.967
930.74
940.269
950.00981
960.619
970.273
980.28
991.07317e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13235


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11796-124C5&oldid=3077838"