FFCP PHASE1:Hg19::chr1:153935277..153935316,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27173 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12876 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NY26 | |||
|association_with_transcript=-52bp_to_AF132942_5end | |||
|description=CAGE_peak_8_at_SLC39A1_5end | |||
|id=chr1:153935277..153935316,- | |||
|ontology_enrichment_celltype=CL:0002009!7.67e-13!65;CL:0000548!1.35e-12!679;CL:0000004!1.35e-12!679;CL:0000255!1.35e-12!679;CL:0000012!4.02e-12!682;CL:0002194!4.30e-12!63;CL:0000576!4.30e-12!63;CL:0000040!4.30e-12!63;CL:0000559!4.30e-12!63;CL:0000063!1.70e-11!578;CL:0000066!5.21e-11!254;CL:0000557!2.68e-10!71;CL:0000839!2.91e-09!70;CL:0000860!5.26e-08!45;CL:0000766!6.75e-08!76;CL:0002057!1.36e-07!42;CL:0000003!1.63e-07!722;CL:0000144!1.91e-07!625;CL:1000507!3.02e-07!12;CL:1000494!3.02e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000507;3.92e-16;10!CL:1000494;3.92e-16;10!CL:1000497;3.86e-14;17!CL:0002518;3.86e-14;17!CL:1000449;2.88e-13;15!CL:0002681;1.53e-10;12!CL:0002584;1.53e-10;12!CL:0000239;7.41e-09;3!CL:1000615;7.41e-09;3!CL:0002306;7.41e-09;3!CL:0000077;3.44e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,5.48e-16,10;CL:1000494,5.48e-16,10;CL:1000497,4.25e-14,17;CL:0002518,4.25e-14,17;CL:1000449,3.70e-13,15;CL:0000066,1.66e-10,253;CL:0002681,2.65e-10,12;CL:0002584,2.65e-10,12;CL:0000239,6.46e-09,3;CL:1000615,6.46e-09,3;CL:0002306,6.46e-09,3;CL:0000077,2.91e-08,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.75e-13!448;UBERON:0004120!7.75e-13!448;UBERON:0006603!7.75e-13!448;UBERON:0002371!1.91e-11!80;UBERON:0004765!4.42e-11!101;UBERON:0001434!4.42e-11!101;UBERON:0001474!3.12e-10!86;UBERON:0002204!3.22e-09!167;UBERON:0000467!6.40e-09!625;UBERON:0002193!7.70e-09!112;UBERON:0000480!8.68e-09!626;UBERON:0001737!9.52e-09!9;UBERON:0003081!9.70e-09!216;UBERON:0002390!1.51e-08!102;UBERON:0003061!1.51e-08!102;UBERON:0000062!4.12e-08!511;UBERON:0000468!7.32e-08!659;UBERON:0002405!7.69e-08!115;UBERON:0009773!3.02e-07!12;UBERON:0001231!3.02e-07!12;UBERON:0004810!3.02e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.83e-25;9!UBERON:0001557;4.83e-25;9!UBERON:0004211;3.92e-16;10!UBERON:0009773;3.92e-16;10!UBERON:0001231;3.92e-16;10!UBERON:0004810;3.92e-16;10!UBERON:0006555;2.88e-13;15!UBERON:0004819;2.88e-13;15!UBERON:0001285;2.88e-13;15!UBERON:0007684;2.88e-13;15!UBERON:0002113;2.19e-11;24!UBERON:0011143;2.19e-11;24!UBERON:0001225;1.53e-10;12!UBERON:0008987;1.53e-10;12!UBERON:0000489;5.17e-09;29!UBERON:0006853;7.41e-09;3!UBERON:0007685;7.41e-09;3!UBERON:0004134;7.41e-09;3!UBERON:0006554;1.24e-08;30!UBERON:0001008;1.24e-08;30!UBERON:0001851;3.28e-08;15!UBERON:0000353;3.28e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.64e-25,9;UBERON:0004810,5.48e-16,10;UBERON:0004211,3.70e-13,15;UBERON:0009773,3.70e-13,15;UBERON:0001231,3.70e-13,15;UBERON:0001285,3.70e-13,15;UBERON:0007684,3.70e-13,15;UBERON:0004208,3.70e-13,15;UBERON:0006555,3.18e-12,16;UBERON:0004819,3.18e-12,16;UBERON:0001557,5.93e-11,19;UBERON:0002113,2.63e-10,26;UBERON:0003918,2.63e-10,26;UBERON:0011143,2.63e-10,26;UBERON:0005095,2.63e-10,26;UBERON:0007687,2.63e-10,26;UBERON:0001225,2.65e-10,12;UBERON:0008987,2.65e-10,12;UBERON:0006853,6.46e-09,3;UBERON:0007685,6.46e-09,3;UBERON:0004134,6.46e-09,3;UBERON:0000489,2.89e-08,31;UBERON:0001851,5.04e-08,15;UBERON:0000353,5.04e-08,15;UBERON:0006554,8.60e-07,47 | |||
|phase1_expression=1.45342703416445,0.214100523890983,0.845726424575827,0,0,0,0,0,0,0.737201809504527,9.76921635161399,0.218441372130172,0,0.247532705920093,0,1.34465029290355,0,0,0,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0.393364276848904,0,0,0.919421224478927,0,0,0,0,0,0,0.200544447470142,0.217010870715852,1.79132379391939,0.971680998056939,0.515151135268373,0.581592955118259,1.13362783106643,0.727752183563449,0.464858073811369,1.23350366406548,0.309706370895104,0.28769239232215,0.512321413058201,0.236482229888585,0.344745680736619,1.93645405075148,0,0.941211697713023,0.272906150057846,0.898893937780338,0.612167784741805,0.641858054152187,0,0,0,0,0.290209238628584,1.70215567407342,0,0.75374599577023,0,0,0,1.10483290796269,0.632924774881769,0.211255286311942,1.06302149982522,0.209658645508376,0.44931452458598,0.450530678524519,0.16072558669708,1.42506371870624,0.59675003159727,0.91332076882317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,1.34140171940727,0,0.361439152384566,0,0.869079113764942,0,0,0,0,0,0.196468613246569,0,0.370784442784429,0.97364218096405,0.522389211897802,1.72845348674525,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.550236083880135,0,0,0.71153252537342,0,0,0.760272105718513,0,0.735326160691737,0,0.17859945656816,0,0,1.53316637465883,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0.573673241497627,0.354668382198357,1.12135520028461,0,1.2333377420858,0.311211035399766,0,0.490385709340376,0,0,0,0.312160076830321,0,0.149448680551801,0,0.323745888736263,0.280901613404497,0.204154171254893,0.859840221182376,0.206651562351531,0,0,0,0.718618141816238,0.336672227908132,0.500474079487857,0.831192346452549,0,0.30648779579902,0.150238058906597,0.567160915800105,0.179389635688862,0,0,0.900273288253207,0,0.515281080091258,0,0.843881661206331,0.0974370051611986,0.504867548488229,0.0920498986422993,0,0,0,0.169560592310488,1.54608682530637,1.09098448236334,0.573609190778008,0,0,0.116193942869518,0,0,0,0,0,0,0,0,2.60274960087657,2.19160097101532,3.37415441836875,2.86764329104224,1.74303555273925,2.60997681022206,4.1797705529651,2.15843611637881,3.46272441251751,0,0,0.4115740113314,0,0,0,0,0,0.368965315629341,0.171567810298526,0.219500570817251,0,0.201057944823262,0.185176890317059,0,0,0,0.231860809950154,0.234817388471643,0.144366447761074,0.462985512576611,0.761016608938393,0,0,3.93947209739836,1.40402559083543,1.78357394746474,0.93733833986777,0.335964256397719,0.283550194484773,0.358234090811393,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0.112131084345361,0.87192013766656,0.1466765716419,0,3.57656445851882,0.845302752556,0,0,1.02882949704857,1.41849132023278,0.799266537048298,0,0.542621605391443,0.823240336780769,0,0,0,20.4978776400519,3.48613383440118,7.69792032101839,0,0.502257091432126,0,0,0,0,0.289562613335158,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0.178428988797162,0.315404830067869,0,0.300946099727719,0,0,0,0.184369168541703,0.434418072340414,0,0,0.206768026122887,0,0,6.06255142892519,0,0,0,0.153461973288062,0,0.128139149255701,0,0.160853921143607,1.48418066444991,0.154209693802656,0.177561725313127,0.328508624055237,0,0.232420756919918,0,0.40101294060657,1.01289087829486,0.229628896329213,0,0.131124414959424,0.902399225814824,1.00119938235739,1.56869953835371,1.46139224653261,0.527758144464379,0,0.340187410553031,0,0,1.08378575017541,4.01351819083883,1.78413391131527,3.3243040357149,1.11937377361089,0,0,8.71930425395723,2.95213181129735,0.976135183992909,0.309123034943167,0.0915694648183434,0,0,0.650060246036521,1.6068392984416,0,0.924291702687866,0.767518373630648,0.137836572484531,0.537101224341368,0.435050081742686,0.511359764496605,0,0.330569830721956,0.576570202095319,0.255225424989168,0.10115778085555,0.464845549297286,0.62962469366128,0,0,1.06461206063404,0,0,0,0.372158369359667,0,0.38126038784765,0.255897791311334,0,0,0,0.359744915166629,0.54907405947211,0.589062011728432,0.202182481573316,1.58510321173008,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0,1.15755106853338,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,0.422215270595328,0,0.75894634753143,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0.764637207142375,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0.500547425135725,0.19538809540204,0,0,0,0,0,0,0,0,0.111443384277478,0.568272293612826,2.14870036263921,0,0.307160702099232,0,0,0,0.16480387422676,0.211125408127993,0.19924798825107,0,0,0.306806047506464,0,0,0.359473404589307,0.537063524026827,0,0.295930216910801,0,2.22273980289274,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0.278847488557207,0,0.455768223388005,0,0,0,2.23300811812344,0.457987967009312,2.13213910407454,0,0,0,0,0,0,0,0,0,1.14262965711403,0,0,0,0,0,0,0.1235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| |||
|short_description=p8@SLC39A1 | |||
}} |
Revision as of 21:05, 10 January 2014
Short description: | p8@SLC39A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SLC39A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -52bp_to_AF132942_5end |
EntrezGene: | SLC39A1 |
HGNC: | 12876 |
UniProt: | Q9NY26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 5.48e-16 | 10 |
nephron tubule epithelial cell | 5.48e-16 | 10 |
kidney cell | 4.25e-14 | 17 |
kidney epithelial cell | 4.25e-14 | 17 |
epithelial cell of nephron | 3.70e-13 | 15 |
epithelial cell | 1.66e-10 | 253 |
kidney cortical cell | 2.65e-10 | 12 |
renal cortical epithelial cell | 2.65e-10 | 12 |
brush border epithelial cell | 6.46e-09 | 3 |
kidney cortex tubule cell | 6.46e-09 | 3 |
epithelial cell of proximal tubule | 6.46e-09 | 3 |
mesothelial cell | 2.91e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.64e-25 | 9 |
nephron tubule epithelium | 5.48e-16 | 10 |
nephron epithelium | 3.70e-13 | 15 |
renal tubule | 3.70e-13 | 15 |
nephron tubule | 3.70e-13 | 15 |
nephron | 3.70e-13 | 15 |
uriniferous tubule | 3.70e-13 | 15 |
nephrogenic mesenchyme | 3.70e-13 | 15 |
excretory tube | 3.18e-12 | 16 |
kidney epithelium | 3.18e-12 | 16 |
upper respiratory tract | 5.93e-11 | 19 |
kidney | 2.63e-10 | 26 |
kidney mesenchyme | 2.63e-10 | 26 |
upper urinary tract | 2.63e-10 | 26 |
kidney rudiment | 2.63e-10 | 26 |
kidney field | 2.63e-10 | 26 |
cortex of kidney | 2.65e-10 | 12 |
renal parenchyma | 2.65e-10 | 12 |
renal cortex tubule | 6.46e-09 | 3 |
region of nephron tubule | 6.46e-09 | 3 |
proximal tubule | 6.46e-09 | 3 |
cavitated compound organ | 2.89e-08 | 31 |
cortex | 5.04e-08 | 15 |
parenchyma | 5.04e-08 | 15 |
urinary system structure | 8.60e-07 | 47 |