FFCP PHASE1:Hg19::chr10:88414338..88414356,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=94233 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14449 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UHM6,C9JWU6 | |||
|association_with_transcript=-17bp_to_ENST00000241891,ENST00000443292_5end | |||
|coexpression_cluster_id=C35 | |||
|description=CAGE_peak_2_at_OPN4_5end | |||
|id=chr10:88414338..88414356,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000054;1.81e-07;2!CL:0000137;1.81e-07;2!CL:0000092;1.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,2.25e-07,2;CL:0000137,2.25e-07,2;CL:0000092,2.25e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.67e-26;2!UBERON:0006601;5.56e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:200;1.81e-07;2!DOID:4305;1.81e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:200,2.25e-07,2;DOID:4305,2.25e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001869!6.21e-58!32;UBERON:0001893!2.83e-54!34;UBERON:0002780!1.75e-52!41;UBERON:0001890!1.75e-52!41;UBERON:0006240!1.75e-52!41;UBERON:0003080!4.14e-51!42;UBERON:0002791!5.81e-51!33;UBERON:0002020!2.44e-49!34;UBERON:0003528!2.44e-49!34;UBERON:0000955!4.13e-45!69;UBERON:0006238!4.13e-45!69;UBERON:0007023!3.32e-44!115;UBERON:0005743!1.45e-42!86;UBERON:0001017!3.56e-42!82;UBERON:0000073!2.08e-40!94;UBERON:0001016!2.08e-40!94;UBERON:0002619!7.68e-40!22;UBERON:0001049!3.12e-39!57;UBERON:0005068!3.12e-39!57;UBERON:0006241!3.12e-39!57;UBERON:0007135!3.12e-39!57;UBERON:0002616!1.07e-37!59;UBERON:0003056!2.56e-36!61;UBERON:0000956!8.92e-35!25;UBERON:0000203!8.92e-35!25;UBERON:0001950!2.05e-33!20;UBERON:0003075!2.55e-30!86;UBERON:0007284!2.55e-30!86;UBERON:0000033!1.61e-29!123;UBERON:0002346!1.16e-28!90;UBERON:0002420!4.67e-28!9;UBERON:0007245!4.67e-28!9;UBERON:0010009!4.67e-28!9;UBERON:0010011!4.67e-28!9;UBERON:0000454!4.67e-28!9;UBERON:0000153!8.96e-28!129;UBERON:0007811!8.96e-28!129;UBERON:0000200!1.97e-23!6;UBERON:0009663!1.32e-20!7;UBERON:0004121!2.12e-20!169;UBERON:0000349!3.11e-20!5;UBERON:0000924!9.71e-20!173;UBERON:0006601!9.71e-20!173;UBERON:0001871!1.18e-17!7;UBERON:0000369!3.96e-17!4;UBERON:0002435!3.96e-17!4;UBERON:0000204!3.96e-17!4;UBERON:0010082!3.96e-17!4;UBERON:0002308!7.21e-16!9;UBERON:0000125!7.21e-16!9;UBERON:0005383!2.46e-13!3;UBERON:0005382!2.46e-13!3;UBERON:0002771!1.69e-12!3;UBERON:0000025!1.45e-10!194;UBERON:0001873!1.93e-09!2;UBERON:0010122!1.93e-09!2;UBERON:0001876!2.55e-09!2;UBERON:0000475!5.88e-09!365;UBERON:0001954!7.69e-09!2;UBERON:0003022!7.69e-09!2;UBERON:0002421!7.69e-09!2;UBERON:0002600!7.69e-09!2;UBERON:0001875!8.98e-09!2;UBERON:0006514!8.98e-09!2;UBERON:0001870!1.18e-08!2;UBERON:0004111!1.34e-08!241;UBERON:0002360!5.26e-08!2;UBERON:0000094!5.26e-08!2;UBERON:0007645!5.26e-08!2;UBERON:0000483!1.42e-07!309;UBERON:0001872!1.50e-07!5;UBERON:0000477!1.97e-07!286;UBERON:0000119!2.00e-07!312;UBERON:0000062!9.13e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0002420;1.27e-67;9!UBERON:0007245;1.27e-67;9!UBERON:0010009;1.27e-67;9!UBERON:0010011;1.27e-67;9!UBERON:0000454;1.27e-67;9!UBERON:0001869;3.33e-56;32!UBERON:0001893;4.70e-52;34!UBERON:0000369;4.37e-51;4!UBERON:0002435;4.37e-51;4!UBERON:0000204;4.37e-51;4!UBERON:0002791;5.31e-49;32!UBERON:0003528;2.37e-47;34!UBERON:0002020;2.37e-47;34!UBERON:0009663;5.20e-45;7!UBERON:0000349;5.28e-40;5!UBERON:0005383;6.64e-39;3!UBERON:0005382;6.64e-39;3!UBERON:0000125;4.78e-35;9!UBERON:0002308;4.78e-35;9!UBERON:0002780;1.00e-32;41!UBERON:0001890;1.00e-32;41!UBERON:0001871;1.66e-28;6!UBERON:0001873;1.67e-26;2!UBERON:0001876;7.19e-26;2!UBERON:0002619;1.16e-25;22!UBERON:0000956;1.19e-22;25!UBERON:0000203;1.19e-22;25!UBERON:0000073;5.88e-21;53!UBERON:0002616;5.88e-21;53!UBERON:0001950;7.80e-21;20!UBERON:0000200;4.79e-19;6!UBERON:0000955;1.09e-17;68!UBERON:0001017;9.60e-16;75!UBERON:0001874;3.08e-14;1!UBERON:0001882;5.15e-14;1!UBERON:0003112;5.15e-14;1!UBERON:0011158;5.15e-14;1!UBERON:0003128;5.15e-14;1!UBERON:0005403;5.15e-14;1!UBERON:0001703;5.15e-14;1!UBERON:0002241;5.15e-14;1!UBERON:0002581;1.18e-13;1!UBERON:0002022;1.18e-13;1!UBERON:0007190;1.18e-13;1!UBERON:0001016;8.06e-11;83!UBERON:0002771;1.81e-07;2!UBERON:0001954;1.81e-07;2!UBERON:0001875;1.81e-07;2!UBERON:0003022;1.81e-07;2!UBERON:0002421;1.81e-07;2!UBERON:0006514;1.81e-07;2!UBERON:0002600;1.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002420,1.15e-67,9;UBERON:0007245,1.15e-67,9;UBERON:0010009,1.15e-67,9;UBERON:0010011,1.15e-67,9;UBERON:0000454,1.15e-67,9;UBERON:0001869,8.32e-62,32;UBERON:0001893,3.35e-58,34;UBERON:0002791,1.33e-52,32;UBERON:0000369,4.98e-51,4;UBERON:0002435,4.98e-51,4;UBERON:0000204,4.98e-51,4;UBERON:0010082,4.98e-51,4;UBERON:0003528,1.58e-49,34;UBERON:0002020,1.58e-49,34;UBERON:0002780,2.79e-48,41;UBERON:0001890,2.79e-48,41;UBERON:0003080,2.79e-48,41;UBERON:0006240,2.79e-48,41;UBERON:0009663,7.15e-45,7;UBERON:0000349,2.89e-40,5;UBERON:0005383,6.65e-39,3;UBERON:0005382,6.65e-39,3;UBERON:0000073,3.01e-37,53;UBERON:0002616,3.01e-37,53;UBERON:0001049,3.26e-35,56;UBERON:0005068,3.26e-35,56;UBERON:0006241,3.26e-35,56;UBERON:0007135,3.26e-35,56;UBERON:0000125,6.13e-35,9;UBERON:0002308,6.13e-35,9;UBERON:0003056,2.93e-32,61;UBERON:0001871,1.21e-28,6;UBERON:0000955,2.08e-28,68;UBERON:0006238,2.08e-28,68;UBERON:0001873,1.67e-26,2;UBERON:0010122,1.67e-26,2;UBERON:0001876,4.08e-26,2;UBERON:0002619,1.12e-25,22;UBERON:0001017,1.00e-23,81;UBERON:0003075,1.00e-23,82;UBERON:0007284,1.00e-23,82;UBERON:0000956,1.16e-22,25;UBERON:0000203,1.16e-22,25;UBERON:0002346,1.45e-22,86;UBERON:0001016,2.95e-21,89;UBERON:0001950,8.24e-21,20;UBERON:0007023,9.47e-20,114;UBERON:0000200,5.60e-19,6;UBERON:0010371,1.96e-18,104;UBERON:0010314,1.08e-16,132;UBERON:0001874,3.08e-14,1;UBERON:0003112,4.53e-14,1;UBERON:0011158,4.53e-14,1;UBERON:0003128,4.53e-14,1;UBERON:0001703,4.53e-14,1;UBERON:0002241,4.53e-14,1;UBERON:0004761,4.53e-14,1;UBERON:0009617,4.53e-14,1;UBERON:0001882,5.85e-14,1;UBERON:0005403,5.85e-14,1;UBERON:0007190,9.73e-14,1;UBERON:0002022,1.42e-13,1;UBERON:0002581,2.07e-13,1;UBERON:0004121,1.78e-10,171;UBERON:0000924,1.78e-10,171;UBERON:0006601,1.78e-10,171;UBERON:0000025,2.82e-09,192;UBERON:0011216,4.74e-09,223;UBERON:0005253,1.12e-07,2;UBERON:0001954,1.54e-07,2;UBERON:0003022,1.54e-07,2;UBERON:0002421,1.54e-07,2;UBERON:0002600,1.54e-07,2;UBERON:0002771,1.75e-07,2;UBERON:0001875,2.12e-07,2;UBERON:0006514,2.12e-07,2;UBERON:0004111,4.45e-07,240 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0,1.9882952955326,2.2507106625682,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.834912883456661,0,0,0,0,0,0,0,0,0,0,3.54296554325536,5.18564686089254,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0.50648636764703,0,0.64127056201227,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0.577901179803038,1.20084057741958,0.547621515567972,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,1.59045937961861,0.544813624446302,0,0,0,0,0,1.21499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.46431517882356,0.751145584238999,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646948868380091,0,0,0,0,0,0,0,0,0,0,0,2.24802287837608,0,0.638535436228605,0,0,0.414943514785307,2.42213468447777,0,0,0,0,0,1.1441462864015,0,0,0,1.61364054962816,0,0,0,0,1.48582686160468,0,0.620060389503552,0.760989722326882,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11813715056843,0,0,0,8.3271262655481,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517164979309476,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@OPN4 | |||
}} |
Revision as of 03:55, 11 January 2014
Short description: | p2@OPN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_OPN4_5end |
Coexpression cluster: | C35_caudate_putamen_diencephalon_nucleus_globus_thalamus_insula |
Association with transcript: | -17bp_to_ENST00000241891, ENST00000443292_5end |
EntrezGene: | OPN4 |
HGNC: | 14449 |
UniProt: | Q9UHM6C9JWU6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 2.25e-07 | 2 |
osteocyte | 2.25e-07 | 2 |
osteoclast | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
giant cell tumor | 2.25e-07 | 2 |
bone giant cell tumor | 2.25e-07 | 2 |