FFCP PHASE1:Hg19::chr11:62623512..62623526,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6520 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11026 | |||
|TSSclassifier=strong | |||
|UniProt=P08195 | |||
|association_with_transcript=0bp_to_ENST00000377892,uc001nwb.2,uc001nwc.2,uc001nwd.2,uc001nwe.2,uc001nwf.2_5end | |||
|coexpression_cluster_id=C3176 | |||
|description=CAGE_peak_9_at_SLC3A2_5end | |||
|id=chr11:62623512..62623526,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.58e-34!254;CL:0000223!9.71e-12!59;CL:0002076!2.27e-09!43;CL:0002321!7.18e-09!248;CL:0000220!1.97e-08!246;CL:0000076!7.67e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.10e-07;7!CL:0000586;2.10e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.37e-32,253;CL:0000223,1.67e-10,58;CL:0002076,9.91e-08,42;CL:0000039,1.80e-07,7;CL:0000586,1.80e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.64e-11;29 | |||
|ontology_enrichment_disease=DOID:162!1.08e-33!235;DOID:14566!1.28e-32!239;DOID:0050687!1.10e-31!143;DOID:305!2.15e-30!106;DOID:0050686!5.02e-11!137;DOID:299!1.29e-08!25;DOID:3095!3.22e-08!22;DOID:2994!3.22e-08!22;DOID:7!5.34e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:305;3.42e-10;106!DOID:1749;3.48e-08;14!DOID:3095;5.60e-08;22!DOID:2994;5.60e-08;22!DOID:7;2.40e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.25e-33,106;DOID:0050687,1.03e-30,143;DOID:162,5.32e-25,235;DOID:14566,6.34e-24,239;DOID:7,1.39e-09,39;DOID:1749,2.07e-08,14;DOID:3095,5.01e-08,22;DOID:2994,5.01e-08,22;DOID:299,9.69e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.75e-14!155;UBERON:0001555!1.75e-14!155;UBERON:0007026!1.75e-14!155;UBERON:0004921!6.42e-14!129;UBERON:0004185!6.42e-14!129;UBERON:0004119!7.79e-14!169;UBERON:0000925!7.79e-14!169;UBERON:0006595!7.79e-14!169;UBERON:0001041!9.07e-14!98;UBERON:0000077!9.80e-14!130;UBERON:0000072!1.37e-10!46;UBERON:0000065!3.48e-10!53;UBERON:0008947!1.27e-09!38;UBERON:0003258!1.27e-09!38;UBERON:0001004!1.46e-09!72;UBERON:0001048!1.68e-08!168;UBERON:0001737!8.00e-08!9;UBERON:0005911!1.08e-07!82;UBERON:0005157!1.85e-07!51;UBERON:0005153!8.70e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.83e-14;9!UBERON:0001557;1.83e-14;9!UBERON:0000072;8.49e-12;37!UBERON:0000065;5.83e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.72e-14,9;UBERON:0008947,1.03e-12,38;UBERON:0003258,1.03e-12,38;UBERON:0000072,5.18e-11,47;UBERON:0001041,1.01e-10,87;UBERON:0001007,6.37e-09,145;UBERON:0001555,6.37e-09,145;UBERON:0007026,6.37e-09,145;UBERON:0004921,7.64e-09,118;UBERON:0000065,1.07e-08,54;UBERON:0001557,5.66e-08,19;UBERON:0004119,1.77e-07,160;UBERON:0000925,1.77e-07,160;UBERON:0006595,1.77e-07,160;UBERON:0001048,2.14e-07,160 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0.631719873426831,0,0.982935746006035,0.697801167972428,0.218441372130172,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0.313454721478088,0.85870796139317,0.547497700291537,0.502170558379211,0.305653622991805,0.328402357799783,0.472264687882075,0,0,0,1.83884244895785,0.90361775633475,2.58827807116751,1.16200800870452,1.42169232487422,0,0,0.200544447470142,0,0,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0.182664153764634,0,0.546138611262131,0,0,0.400395987036012,0,0.661044872784862,1.90810750907073,0,0,0,0,0,1.05353633910031,0,0,0.205601498999509,0.167186495390678,0.32592226663359,0,0,0.111410456885174,0.294605907474837,0,0,0.384273959177026,0.260118695119756,0,0.276350017785848,0.289803085735052,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0,0,0.144846518960824,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.130979075497713,1.45718115317017,4.07862887062872,0.649094787309367,0,0.398873881556595,0,0,0,1.39133685156694,1.72046919021225,0.694281003215189,0,0,1.37559020970034,0.417989933073621,0.258416759169329,1.06729878806013,0,0,0,0.24406205754817,0,0.81014194788176,0.892997282840798,0.44905874525234,1.0135033243499,0,1.89853131913626,1.28241220751285,0,0,3.92484646928281,0,0.379891534993739,0.264818361626438,0.573673241497627,0.709336764396714,0,0,0.98667019366864,0,0.134710672069688,0.326923806226917,0,0,0.70296429550139,0.312160076830321,1.1409436430889,0.448346041655403,0.117434498643765,0.161872944368132,0,0,0.368502951935304,0.206651562351531,0,0.247266929278557,0,0,0.505008341862199,0.500474079487857,0.277064115484183,0,0,0,0.680593098960126,0.538168907066586,0,0,0.600182192168805,0.103052529238439,0,0.37223371266318,0.506328996723799,0.194874010322397,0,0.184099797284599,0.161646056818812,0,0.10075209822764,0.169560592310488,0.193260853163297,0.545492241181669,0.573609190778008,1.09776335516636,1.32529768321485,0.813357600086629,1.0366105501537,2.01856680700503,1.45990943630332,0,0.643240938192885,0,0,0,4.37735160147422,6.23763353288976,4.82022059766964,5.07352274569012,5.22910665821775,3.32178866755535,3.7752766284846,3.92442930250692,4.23221872641029,0,1.40241773803446,0.8231480226628,0,0,0.982827216677626,1.77236972004421,0.882926198829301,0.983907508344908,0,0.329250856225877,3.37205259772859,0.904760751704678,1.66659201285353,0.977424915930974,1.03993478527958,0,0.231860809950154,0.234817388471643,0.433099343283221,0.462985512576611,0,3.1608175918371,1.71697232418975,0,0,0.594524649154913,0,0.16798212819886,0.141775097242386,0.985143749731331,1.45316969256981,3.4504441124869,0,0,0,0,0,2.28592419451809,0.763976851116555,1.17217447210047,0,1.95372236136315,2.70308752059526,1.42913216315289,0.224262168690721,0.43596006883328,0.4400297149257,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0.142977993658148,0,0,0,0.355391948742546,1.58390374586686,0.301439377059586,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0.289562613335158,0,0,0.224170287987055,0,0,0,0.254094624222463,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,4.5481500811197,0,0,0.184369168541703,0.0868836144680828,0.391602314925481,0,0.206768026122887,0,0,0.303127571446259,0,0,0.248107807818777,0.153461973288062,0,0,0,0,0,0.308419387605311,0,0,0,0.116210378459959,1.0877350463246,0.200506470303285,0.920809889358963,0.34444334449382,0.364182336013434,0.262248829918848,0.902399225814824,0.308061348417659,0,1.46139224653261,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0.812839312631559,0,0.509752546090077,1.66215201785745,0.447749509444357,0.219259876645935,1.5686127061494,1.53870075069834,1.31205858279882,0.325378394664303,0,0.0915694648183434,0.247528499761764,1.72279661398852,1.95018073810956,0,0.096670718292122,0.462145851343933,0,0,0.107420244868274,0.290033387828457,0.170453254832202,0,0.330569830721956,0.576570202095319,0.510450849978337,0.50578890427775,0,0,2.0911118104818,1.23213432070436,0,0,0,0.429374660225974,0,0,0.38126038784765,0.511795582622668,0,0,0,0,0,0.353437207037059,0.202182481573316,0,0,0.975267478179181,0,0,0,0.565621727814851,1.13008116620243,0.551365343546124,0,0.438450885253763,0,0,0.608731130888112,0,0,0.286822704408103,0.196498082026242,0.7133421029625,0,0,0,0.75894634753143,1.04980416073495,1.25088746543166,1.34060455107157,2.17781969722645,0.376575203107117,0,1.68471475667626,0,0,0,0,0,0.238231775457789,0,0,0,0,0.640944426764839,1.92495971052672,2.69544237579135,0.185803175125719,1.00988449083511,0.569134746787313,1.75368900001705,0.59873811429845,0.191505370132367,0.211673582723883,0.324621940274555,0,0.228234679033192,0.626719583092093,0,0.169291777801603,0.1605880751037,0,0,0,0.921722292925374,0.223676107892416,0.333698283423817,0.781552381608161,0.556812347790485,0,1.08182271390393,0.33307196799782,0,0.748562161632879,0,2.30584991324076,0,0,0,0.296964680832639,0.307160702099232,0,0.703347082052564,0.222617410045812,0,0,0.19924798825107,0,0.503865495708552,0.613612095012929,0.615424027305347,0,0.449341755736634,3.22238114416096,0,0.0986434056369336,0,1.11136990144637,0,0.185536196323703,0,4.16684417736373,0.874599999961957,0,10.8103775871225,2.03402920234213,2.6002644994473,1.03423011972439,1.45802306691627,0.868124974666461,0.885741385813839,0,0,0,0,0,4.90223085835456,5.99522100397994,0,0.227884111694002,1.61394733071642,2.51321404347362,4.0199527611143,0.31900115973192,0,0,1.02193298195737,0.156980256395025,0.166211681900156,0.902382642468723,0.980312671588698,0.671286347903371,0.189753732724185,0.476809736941136,1.68798451622422,0.979396848954886,2.82706142867882,1.29833183845255,0,0.353830258013357,0,0.296521128680622,0,0.626531697032732,0.067401132980677,0,0,0.364909578431332,2.15231080825299,0.242780379534093,0,0,0.30607276163049,0.063186579628488,0.751617097072463,0.72581733978073,1.99396161812156,0.661983911750998,0.627865836814451,1.19472429772959,0,1.10939738410511,2.77695581336209,0.881931576729399,1.56706571844725,0.17472666824203,0.343972064943233,3.38647159511798,4.16609107391258,3.85942648150083,0.290967049465258,0,0,0.137041924646751,2.58328995213887,0.379864775735272,1.36885967914362,0.320635281006135,0.213452994739353,0.599428828746391,1.87317542300338,1.83258553865465,0.686379991447858,1.7286575758578,0.124252535565433,3.06402245001834,0.271808412147228,0.209205692624666,1.4279750469085,1.15580235960608,0,0.410716136675979,0,1.28929632425987,0.262887354279314,0,0,1.43574604915363,0.798716001995964,0,0.223171457441873,0.201550417460179,0,2.32991899054908,2.04836273998782,2.14281231791033,2.49393112260484,0.984274815147488,0.677386656526276,0,0.136203406111576,4.1795818600905,5.50157746388935,4.15440338029185,0,0,0.121499113316049,3.35434687599266,0.0788057072991982,0.157363764404994,0.105600336519406,0.35857467866569,2.49489756515279,0,0,2.5426853765475,0.542999601753713,0,0,0,0,0,0.906496732161005,0.58620893471233,1.32506888912221,0.129282956361551,0.13223260174269,2.73738940614927,1.40963004463334,0,0.157204305099666,0.414239055347196,0,0.395223263795889,0.60896299190448,0,0,0,0,0,0.942324577501406,0.886068179966986,0,0.250381861413,0,0.332787154610557,0.248385611765534,0.968440444553616,1.62474530350739,0.151649117541648,0.570930667089935,0.235265819698172,0.468334905806882,0.724605143054126,0,0.233713309847224,0,0,0,0,0.457680136793847,0,0.15543720058278,0,0.318593534327405,0.449803112163605,0,0,0,1.04349012362347,0,0,0.406870733204662,0,0.107410557042488,0.464033759878494,0,0.800055529326307,0.343395705182793,0.336749488765919,0,0,0.643324774124777,2.3489486276869,0.680117776536817,0,0.734210113519403,0,0.926404341482917,0.877136198314828,0.353378291891762,0.192914038270915,0.506827321959218,1.28120759293973,2.76344273384959,0,0.414775308455192,0,0,0,0,3.93236654005951,0.422624246717254,0.19998739585493,1.49368421571797,0.516644938982447,1.13503190713367,0,1.11903606175556,0.622077260032973,0.383683113910955,0.646948868380091,1.25812753484717,0.54604819096007,5.77090601843686,0.850299680406731,1.85903646388503,0.558644917973244,0,0.70975570501128,0.80057074828547,0.352675943690684,0,0.128458450192919,0,0.478901577171454,0.205116364240755,0.756215088665154,0.138314504928436,0,0,1.66851121451744,3.65706142377995,1.28400018965175,1.84841065840541,0,0.690359926060101,0,0.150420656698515,0.20170506870352,0,1.04762677792569,1.63771917510097,0.591424344868181,0,0,0.206686796501184,0.126831620387814,0,0.548257766857182,0,0.351742488719241,5.62154681614219,0,0.336283722218824,0,0,0.177404740325278,0.345701962667338,0,0.203909198930495,0.0657727735628491,2.9548460220992,0.444925607568277,0.156986185701028,0,0.840816489941367,1.82631744101899,0.215927591218621,0,0,1.10609528212909,0.464965701472501,0.869291361512897,0.801711364730253,0.207216164163037,0.6828739083758,0,0,0.118332000730565,0.170426809518315,0,0.9164274741762,0.62041277132864,2.8666168169323,0.111855431797792,0.687051635306701,0.487671699929078,0,0,0,0,1.40363678077263,1.19370465096821,1.18920090777569,1.24240690242856,0.659643100472575,0.603851374266694,0.308696632431779,0.437119121007915,3.76253837089218,0,1.64973582971138,0,0,0,0,0.187967835959707,0.322289439867886,0.199882311849858,4.28529452653578,0.705789743431384,1.28386186702669,1.46067277649303,0.458729283404541,0,0.315543124386369,0.135982980381829,0.436350690340377,0,0,0,0,2.14482922219634,2.84090487105608,1.0135880080915,2.75369840303351,2.40495664739004,0.735159196278759,3.25919801080088,0.0757786982182394,0.267964130156178,0,0.103432995861895,0,0.23806443146374,0.129177819672012,0.31037357147929,1.90624166387043,0.12729431655633,0,0.217716747896961,0.684466602170562,0.471464371102113,0.143444410785353,0.332660356546013,0.244209805832924,0.853818767021724,0,0.898252021065869,2.34640942403454,0,0,0.665756774185513,0,0.320568492303233 | |||
|short_description=p9@SLC3A2 | |||
}} |
Revision as of 08:14, 11 January 2014
Short description: | p9@SLC3A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SLC3A2_5end |
Coexpression cluster: | C3176_oral_cervical_Esophageal_Hep2_iPS_giant_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000377892, uc001nwb.2, uc001nwc.2, uc001nwd.2, uc001nwe.2, uc001nwf.2_5end |
EntrezGene: | SLC3A2 |
HGNC: | 11026 |
UniProt: | P08195 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.37e-32 | 253 |
endodermal cell | 1.67e-10 | 58 |
endo-epithelial cell | 9.91e-08 | 42 |
germ line cell | 1.80e-07 | 7 |
germ cell | 1.80e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.72e-14 | 9 |
respiratory primordium | 1.03e-12 | 38 |
endoderm of foregut | 1.03e-12 | 38 |
segment of respiratory tract | 5.18e-11 | 47 |
foregut | 1.01e-10 | 87 |
digestive system | 6.37e-09 | 145 |
digestive tract | 6.37e-09 | 145 |
primitive gut | 6.37e-09 | 145 |
subdivision of digestive tract | 7.64e-09 | 118 |
respiratory tract | 1.07e-08 | 54 |
upper respiratory tract | 5.66e-08 | 19 |
endoderm-derived structure | 1.77e-07 | 160 |
endoderm | 1.77e-07 | 160 |
presumptive endoderm | 1.77e-07 | 160 |
primordium | 2.14e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.25e-33 | 106 |
cell type cancer | 1.03e-30 | 143 |
cancer | 5.32e-25 | 235 |
disease of cellular proliferation | 6.34e-24 | 239 |
disease of anatomical entity | 1.39e-09 | 39 |
squamous cell carcinoma | 2.07e-08 | 14 |
germ cell and embryonal cancer | 5.01e-08 | 22 |
germ cell cancer | 5.01e-08 | 22 |
adenocarcinoma | 9.69e-07 | 25 |