FFCP PHASE1:Hg19::chr12:102271520..102271550,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55332 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25645 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-24bp_to_ENST00000549365_5end | |||
|coexpression_cluster_id=C809 | |||
|description=CAGE_peak_4_at_DRAM1_5end | |||
|id=chr12:102271520..102271550,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.33e-24!679;CL:0000004!4.33e-24!679;CL:0000255!4.33e-24!679;CL:0000012!4.70e-24!682;CL:0000144!6.00e-23!625;CL:0002371!9.82e-20!591;CL:0000063!9.58e-18!578;CL:0000860!2.18e-16!45;CL:0002194!7.25e-16!63;CL:0000576!7.25e-16!63;CL:0000040!7.25e-16!63;CL:0000559!7.25e-16!63;CL:0000839!1.30e-15!70;CL:0002057!2.39e-15!42;CL:0000003!2.59e-15!722;CL:0000766!1.13e-14!76;CL:0000557!1.51e-14!71;CL:0002009!1.75e-14!65;CL:0000048!2.66e-11!430;CL:0000723!8.53e-11!436;CL:0000034!7.33e-10!444;CL:0000222!3.83e-08!119;CL:0000134!7.53e-08!358;CL:0000057!1.60e-07!75;CL:0002320!4.06e-07!365;CL:0000055!8.19e-07!180;CL:0000192!9.18e-07!42;CL:0000514!9.18e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.52e-16;39!CL:0000234;8.52e-16;39!CL:0000860;4.47e-15;33!CL:0002057;4.47e-15;33!CL:0000576;2.87e-09;48!CL:0000766;4.10e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.40e-20,48;CL:0000234,4.40e-20,48;CL:0000860,2.03e-16,42;CL:0002057,2.03e-16,42;CL:0002194,1.02e-15,59;CL:0000576,1.02e-15,59;CL:0000040,1.02e-15,59;CL:0000559,1.02e-15,59;CL:0000839,1.80e-15,66;CL:0000557,1.55e-14,67;CL:0002009,1.90e-14,61;CL:0000766,4.38e-14,72;CL:0000048,9.19e-13,427;CL:0000723,1.65e-12,433;CL:0000034,1.82e-11,441;CL:0000134,9.73e-09,354;CL:0000222,6.98e-08,121;CL:0002320,9.05e-08,361;CL:0000057,1.52e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;2.66e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.77e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,6.27e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.23e-15!167;UBERON:0003081!1.44e-14!216;UBERON:0002371!2.26e-14!80;UBERON:0000926!4.38e-14!448;UBERON:0004120!4.38e-14!448;UBERON:0006603!4.38e-14!448;UBERON:0002193!1.50e-13!112;UBERON:0004765!3.19e-13!101;UBERON:0001434!3.19e-13!101;UBERON:0002390!2.32e-12!102;UBERON:0003061!2.32e-12!102;UBERON:0001474!4.74e-12!86;UBERON:0002405!1.91e-09!115;UBERON:0000480!2.43e-08!626;UBERON:0000467!2.67e-08!625;UBERON:0001637!9.39e-08!42;UBERON:0003509!9.39e-08!42;UBERON:0004572!9.39e-08!42;UBERON:0000055!1.95e-07!69;UBERON:0004573!4.71e-07!33;UBERON:0004571!4.71e-07!33;UBERON:0002384!8.85e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.29e-14,76;UBERON:0002204,1.40e-14,167;UBERON:0003081,4.14e-14,203;UBERON:0000926,2.12e-13,315;UBERON:0004120,2.12e-13,315;UBERON:0006603,2.12e-13,315;UBERON:0002405,5.18e-13,93;UBERON:0002193,2.19e-12,108;UBERON:0001474,2.58e-12,82;UBERON:0001434,2.90e-12,100;UBERON:0004765,6.36e-12,90;UBERON:0002390,2.67e-11,98;UBERON:0003061,2.67e-11,98;UBERON:0001637,6.41e-08,42;UBERON:0003509,6.41e-08,42;UBERON:0004572,6.41e-08,42;UBERON:0002384,2.90e-07,371;UBERON:0004573,4.13e-07,33;UBERON:0004571,4.13e-07,33 | |||
|phase1_expression=4.36028110249336,2.99740733447376,7.75249222527841,2.00146596706261,4.91657203870017,5.23403114460221,0,0,0.783556884599516,1.72013755551056,0,0.436882744260345,1.05506791291381,0.990130823680373,0,2.6893005858071,1.80808358407193,1.46062018077475,4.87932798790507,0.492484232307152,0.204000691244253,0.313454721478088,0.286235987131057,0.684372125364421,0.753255837568817,3.20936304141395,3.69452652524756,2.51874500203774,1.18009283054671,1.53531759238885,0.928896739896456,1.83884244895785,3.31326510656075,1.84877005083394,0,0,1.46800219667424,21.6058209327432,20.0544447470142,13.8886957258145,2.91090116511902,2.26725566213286,2.83333124397605,2.61716829803216,3.77875943688809,4.60909716256851,11.3890228083785,12.3350366406548,13.9367866902797,12.9461576544968,11.0149103807513,17.4996850117553,39.3010076039745,32.9197188627751,55.5248595036801,5.27078550719293,8.73299680185107,14.8317499733756,41.9334932548137,25.6743221660875,54.3436556929185,6.59702600373432,6.18337338627059,11.9342930149154,51.0768259986308,47.6603588740557,70.3789141365,6.78371396193207,10.429658368404,9.99068685643537,41.1671661790691,59.2926993939979,75.9509729858123,1.47878700418359,1.91343869968539,2.30624510059213,1.34794357375794,1.95229960693958,1.28580469357664,1.14005097496499,0.99458338599545,1.27864907635244,0,0.546138611262131,0,0.426730222566507,0,1.72425731986345,0,0,1.1384259382189,1.17447437874188,1.14681968437569,0,12.3311883855938,0.263384084775077,0.196709770113833,0.393010762749165,0.205601498999509,0.501559486172034,0,0,0,0,0,0.221533894583621,0,0.128091319725675,0.520237390239513,0.657751618414705,0,0,0,0,0,0.226618685395132,0,0,0.253019692019503,0,0,0,0.451725357233318,0,0,0.236777252044017,0,0,1.06976078313403,0.579297615531196,0,0,0.383587685530591,15.1804444001518,6.51739283826656,10.1392563272577,1.5905718941022,2.43317435151318,0.378139268656271,0.665188192387692,0.263504357079378,1.5062593682237,1.09288586487763,2.22470665670658,0.97364218096405,1.74129737299267,2.79211717089617,0,0,0,3.57772333260069,4.30117297553062,1.04142150482278,1.69592382577203,2.51699661725944,2.47606237746061,1.46296476575767,3.35941786920128,6.40379272836078,2.00832367658802,4.43112248820062,3.04108842287405,2.4406205754817,2.94130464276695,3.24056779152704,1.07159673940896,0.673588117878509,0.563057402416611,1.53316637465883,0,1.46561395144326,1.31780417436063,0,2.61656431285521,17.3940183093361,4.55869841992487,16.0215108783995,2.29469296599051,4.965357350777,2.24271040056923,3.20246987189115,3.94668077467456,0.622422070799533,2.42479209725439,1.63461903113459,0.908144565869588,0.576175924479999,1.17160715916898,3.74592092196385,1.1409436430889,4.33401173600223,0.704606991862589,0.485618833104395,0.280901613404497,2.04154171254893,0.737005903870608,1.54988671763648,11.8800285728205,8.65434252474949,3.64064544775211,5.74894513452991,0.336672227908132,0.750711119231785,3.04770527032601,2.63386572528503,7.66219489497549,11.7185685947146,1.47461838108027,5.38168907066586,6.83383644219416,8.9011398487016,4.50136644126603,8.14114980983667,6.44101350114073,7.81690796592677,5.23206629947925,3.21542117031955,1.7670364197088,6.16734320903406,7.92065678412178,5.68015348026583,4.03008392910561,3.73033303083073,11.2091294834712,17.7284978384043,10.3249654340041,0.243947412259191,0,0.116193942869518,0.310983165046111,0.756962552626885,0,21.9029345261742,8.36213219650751,0,6.50115099244771,6.49691533502627,11.4757596038649,11.4637589253109,9.88145222522276,13.1249827551549,9.58669554006587,13.0498840511103,9.43819157121151,9.02618739576592,8.46443745282059,0.738155454624648,0,0.4115740113314,0,0,0,0.590789906681404,0,0.614942192715568,0.857839051492628,4.93876284338815,0,1.60846355858609,1.94435734832912,0.325808305310325,2.07986957055916,2.88662684050547,0.34779121492523,2.7003999674239,7.07395594029262,8.33373922637899,6.08813287150714,0,0.858486162094873,14.5268033591564,16.3802985597466,14.7144850665841,14.9974134378843,26.2052119990221,17.0130116690864,4.65704318054811,3.77824120068151,3.4504441124869,5.41929561685538,4.66656700270098,1.24396869324463,2.30591925467138,1.00993946741104,0.253991577168676,1.52795370223311,0,3.4214489204541,1.23392991243988,4.80548892550268,1.42913216315289,0.897048674762886,0.43596006883328,0.2933531432838,19.77857251094,0,0,21.0091112102048,20.8014873822732,0.514414748524284,0,0,2.57360388584666,0.542621605391443,0,0.325736184293735,2.13235169245527,0,45.2159065589379,18.3022026306062,33.0910600812609,15.8110914833548,28.1263971201991,16.8667151586425,2.87549826589899,0,4.27910715122155,6.65994010670864,5.75333703141074,4.47652408099739,0.896681151948218,1.18218456121156,0.862510299438069,0.513372145118994,0.254094624222463,0,0.773288812777695,0,0,0.749007023947182,2.99161459204025,3.31532410748828,0.12269149171914,0.500170521059677,1.35632511849868,44.7137352291235,48.7111139416252,50.1493679807912,15.4626667790381,3.61135319673263,2.27407504055985,1.03473071292505,1.99267679560631,0.737476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| |||
|short_description=p4@DRAM1 | |||
}} |
Revision as of 15:31, 11 January 2014
Short description: | p4@DRAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_DRAM1_5end |
Coexpression cluster: | C809_CD14_Olfactory_Synoviocyte_Monocytederived_Mesothelial_Fibroblast_Smooth |
Association with transcript: | -24bp_to_ENST00000549365_5end |
EntrezGene: | DRAM1 |
HGNC: | 25645 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 4.40e-20 | 48 |
phagocyte | 4.40e-20 | 48 |
classical monocyte | 2.03e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.03e-16 | 42 |
monopoietic cell | 1.02e-15 | 59 |
monocyte | 1.02e-15 | 59 |
monoblast | 1.02e-15 | 59 |
promonocyte | 1.02e-15 | 59 |
myeloid lineage restricted progenitor cell | 1.80e-15 | 66 |
granulocyte monocyte progenitor cell | 1.55e-14 | 67 |
macrophage dendritic cell progenitor | 1.90e-14 | 61 |
myeloid leukocyte | 4.38e-14 | 72 |
multi fate stem cell | 9.19e-13 | 427 |
somatic stem cell | 1.65e-12 | 433 |
stem cell | 1.82e-11 | 441 |
mesenchymal cell | 9.73e-09 | 354 |
mesodermal cell | 6.98e-08 | 121 |
connective tissue cell | 9.05e-08 | 361 |
fibroblast | 1.52e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.29e-14 | 76 |
musculoskeletal system | 1.40e-14 | 167 |
lateral plate mesoderm | 4.14e-14 | 203 |
mesoderm | 2.12e-13 | 315 |
mesoderm-derived structure | 2.12e-13 | 315 |
presumptive mesoderm | 2.12e-13 | 315 |
immune system | 5.18e-13 | 93 |
hemolymphoid system | 2.19e-12 | 108 |
bone element | 2.58e-12 | 82 |
skeletal system | 2.90e-12 | 100 |
skeletal element | 6.36e-12 | 90 |
hematopoietic system | 2.67e-11 | 98 |
blood island | 2.67e-11 | 98 |
artery | 6.41e-08 | 42 |
arterial blood vessel | 6.41e-08 | 42 |
arterial system | 6.41e-08 | 42 |
connective tissue | 2.90e-07 | 371 |
systemic artery | 4.13e-07 | 33 |
systemic arterial system | 4.13e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.27e-07 | 14 |