FFCP PHASE1:Hg19::chr13:48807334..48807354,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9445 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6174 | |||
|TSSclassifier=strong | |||
|UniProt=Q5W0A2 | |||
|association_with_transcript=0bp_to_ENST00000378549_5end | |||
|coexpression_cluster_id=C3376 | |||
|description=CAGE_peak_1_at_ITM2B_5end | |||
|id=chr13:48807334..48807354,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.05e-23!76;CL:0002057!6.85e-20!42;CL:0000557!2.17e-19!71;CL:0000839!1.39e-18!70;CL:0002009!4.01e-17!65;CL:0002194!7.57e-17!63;CL:0000576!7.57e-17!63;CL:0000040!7.57e-17!63;CL:0000559!7.57e-17!63;CL:0000860!3.89e-16!45;CL:0000763!2.50e-08!112;CL:0000049!2.50e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.33e-15;33!CL:0002057;4.33e-15;33!CL:0000473;4.95e-15;39!CL:0000234;4.95e-15;39!CL:0000576;8.50e-13;48!CL:0000766;1.59e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.41e-26,72;CL:0000473,1.06e-22,48;CL:0000234,1.06e-22,48;CL:0000557,6.19e-22,67;CL:0000839,4.49e-21,66;CL:0000860,6.85e-20,42;CL:0002057,6.85e-20,42;CL:0002009,1.33e-19,61;CL:0002194,2.35e-19,59;CL:0000576,2.35e-19,59;CL:0000040,2.35e-19,59;CL:0000559,2.35e-19,59;CL:0000763,2.43e-09,108;CL:0000049,2.43e-09,108;CL:0000738,8.37e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.58e-30!115;UBERON:0002193!6.91e-17!112;UBERON:0002390!1.35e-16!102;UBERON:0003061!1.35e-16!102;UBERON:0002371!2.66e-15!80;UBERON:0003081!6.31e-14!216;UBERON:0001474!3.38e-13!86;UBERON:0002405!8.35e-13!115;UBERON:0004765!1.88e-11!101;UBERON:0001434!1.88e-11!101;UBERON:0000467!1.04e-10!625;UBERON:0000480!1.12e-10!626;UBERON:0000468!3.30e-10!659;UBERON:0000062!3.73e-09!511;UBERON:0002050!1.26e-08!605;UBERON:0005423!1.26e-08!605;UBERON:0000923!2.13e-08!604;UBERON:0005291!2.13e-08!604;UBERON:0006598!2.13e-08!604;UBERON:0002532!2.13e-08!604;UBERON:0000922!2.43e-08!612;UBERON:0002204!1.12e-07!167;UBERON:0001049!2.99e-07!57;UBERON:0005068!2.99e-07!57;UBERON:0006241!2.99e-07!57;UBERON:0007135!2.99e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.70e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.03e-30,114;UBERON:0002193,1.50e-18,108;UBERON:0002390,2.40e-18,98;UBERON:0003061,2.40e-18,98;UBERON:0002371,2.91e-17,76;UBERON:0002405,4.21e-16,93;UBERON:0003081,2.79e-15,203;UBERON:0001474,7.17e-15,82;UBERON:0004765,1.11e-13,90;UBERON:0001434,2.54e-12,100;UBERON:0000926,4.47e-11,315;UBERON:0004120,4.47e-11,315;UBERON:0006603,4.47e-11,315;UBERON:0005423,9.72e-11,581;UBERON:0002050,9.95e-11,564;UBERON:0000923,3.35e-10,560;UBERON:0010316,3.35e-10,560;UBERON:0005291,3.35e-10,560;UBERON:0006598,3.35e-10,560;UBERON:0010317,3.35e-10,560;UBERON:0002532,3.35e-10,560;UBERON:0000922,1.09e-09,592;UBERON:0002204,2.89e-08,167;UBERON:0001049,6.72e-07,56;UBERON:0005068,6.72e-07,56;UBERON:0006241,6.72e-07,56;UBERON:0007135,6.72e-07,56 | |||
|phase1_expression=580.280743390158,597.126361131952,775.953994548321,310.227224894704,431.76441721676,384.701289128263,412.878801414346,288.064262282635,564.944513796251,60.6962823158727,34.1922572306489,102.01212078479,125.816848614972,188.991220969991,115.657684129043,289.099812974263,309.784987404324,353.470083747489,368.877195885623,69.070913581078,62.8322129032299,211.895391719187,177.180076034124,129.07258284373,140.1055857878,3.89708369314551,3.36612416744778,1.8890587515283,600.273886471427,305.528200885381,587.682004107824,60.6818008156092,105.422071572388,82.8248982773604,10.1482032760195,9.80967704163209,159.718638998157,525.18764728822,602.234975752836,700.077068929338,1098.52931662107,1041.96592358306,1116.07493455893,844.182174354153,587.597092436099,645.758770881967,873.700749728469,601.538620175931,534.553196164949,1123.438792018,793.842029533683,803.093652701635,1037.68449901722,675.176979028682,710.989054620294,840.878530736815,561.095044518931,602.258938312827,1007.62817368501,733.322826868874,693.041444366161,933.479179528407,840.140925902313,675.56622959432,1078.99794922108,741.57248867132,663.305695180287,1016.55209962878,774.402133853999,756.034368418511,975.90399824499,778.170644841724,767.104827156704,644.11736796511,572.968588405792,829.199942985627,757.544288451963,683.455039321695,758.464043623521,609.072233375048,629.173449980722,761.526857044759,114.39755889986,162.203167544853,134.315897333397,134.42002010845,116.915628214516,166.6782075868,154.684500231658,144.06211693484,166.210186979959,131.54113041909,121.180613315698,219.404405441183,108.178152655436,119.83975857266,338.537514365907,254.27796349871,347.055330311172,176.716125627947,280.619071571521,272.705936103206,270.809152486997,166.89286441399,243.933691389165,250.776368668659,173.043668945845,184.707683044424,177.270890724114,281.188816872286,223.567164388751,206.339797043357,352.62544719938,323.991942816643,313.60657141493,161.012575973242,331.485726965662,302.048524579232,338.540347922095,328.759507582468,271.501800258127,333.608667601379,162.018828127684,162.926955999575,291.088592866966,372.687394717283,315.313150817682,206.243698318901,186.138376265321,276.904260223912,1336.06162740051,543.938397219649,346.123954910437,133.371047229905,246.658252032858,704.968007782329,282.32651120314,685.668532256414,162.505350705033,177.826976764976,208.168442092709,802.770753725481,284.150324868183,352.616005087992,267.102504977804,282.438433899411,337.048429915323,164.081549522075,185.326351092761,69.4625527486286,145.692844599795,261.511316912262,172.875969800582,295.090745684333,277.289127334748,194.508455651628,145.251501743083,395.636058288243,487.399779880793,371.539880168784,135.350650548673,431.834556048115,474.212577816093,100.739684014768,221.978893719602,175.384666349933,192.421672340628,199.772766377414,95.0563152288476,132.897192339538,152.79025443796,3364.35405714269,4955.8317758156,295.671767352638,525.796324893647,304.926272088308,404.112819841944,620.714447300433,280.897358701099,266.321860067596,171.865883124825,419.334832309172,563.914396144376,179.704036540964,169.346531625543,184.504704299171,464.397795130879,57.8773936629478,96.7696238173994,90.134547804023,122.697366733029,25.1309827097657,23.6334498777472,22.050776652253,94.1150729485058,60.8029870693251,166.561159255334,402.732968618616,406.01229787539,72.8129089550421,175.342826603162,65.1460761002236,66.0625784923971,83.3962987607391,183.931623149071,231.704773624059,479.710122088764,348.803963217065,107.992560684695,268.014522967302,193.917689560999,192.358392590102,88.522122615819,107.436105199027,234.507238977803,335.696124827879,96.657509119909,69.1668541428874,232.333944173164,153.72540003469,326.608825115285,70.5264687593482,76.1327059474089,364.683229919141,387.299491238985,328.391261720409,89.2847528868638,86.0118196406439,111.662379097607,148.027986561949,176.876916463816,48.1770113980096,233.109803171426,310.042132208971,99.457143373786,286.515011595731,253.379698066025,71.1023868239462,78.7290502664735,64.5909560087732,81.2866579037743,63.838677119075,71.181185733329,92.3594460897126,69.0699557241218,89.646087568509,244.329455480759,224.386838085513,125.530073456077,157.29932118253,476.598930930084,395.096541104406,408.23582551685,110.807237953077,159.761981667505,314.1406606566,271.631956386348,144.998261702329,198.042075650913,360.076463221522,38.119571721308,96.7139350310008,170.310983589822,188.966560109375,699.990635033969,292.630789611697,288.439974335228,400.484990453829,120.11106848981,123.622007341662,1529.00760780274,318.245800589363,737.953720763536,383.371381005918,338.8199525771,257.463576592174,220.761758462521,180.774309755684,189.77442618678,1592.28758487969,1248.96703647761,1177.41636815604,947.156333856271,1098.30917080951,229.862377337652,190.612224353581,148.86615795676,248.055046732923,158.765648733931,261.899146439896,339.561801965127,40.0307971112938,96.3471752121549,94.8997418523093,331.323407487184,207.4407385940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767358 | |||
|short_description=p1@ITM2B | |||
}} |
Revision as of 17:42, 11 January 2014
Short description: | p1@ITM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ITM2B_5end |
Coexpression cluster: | C3376_Neutrophils_Eosinophils_chorionic_epididymis_clear_kidney_Whole |
Association with transcript: | 0bp_to_ENST00000378549_5end |
EntrezGene: | ITM2B |
HGNC: | 6174 |
UniProt: | Q5W0A2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.41e-26 | 72 |
defensive cell | 1.06e-22 | 48 |
phagocyte | 1.06e-22 | 48 |
granulocyte monocyte progenitor cell | 6.19e-22 | 67 |
myeloid lineage restricted progenitor cell | 4.49e-21 | 66 |
classical monocyte | 6.85e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.85e-20 | 42 |
macrophage dendritic cell progenitor | 1.33e-19 | 61 |
monopoietic cell | 2.35e-19 | 59 |
monocyte | 2.35e-19 | 59 |
monoblast | 2.35e-19 | 59 |
promonocyte | 2.35e-19 | 59 |
myeloid cell | 2.43e-09 | 108 |
common myeloid progenitor | 2.43e-09 | 108 |
leukocyte | 8.37e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.03e-30 | 114 |
hemolymphoid system | 1.50e-18 | 108 |
hematopoietic system | 2.40e-18 | 98 |
blood island | 2.40e-18 | 98 |
bone marrow | 2.91e-17 | 76 |
immune system | 4.21e-16 | 93 |
lateral plate mesoderm | 2.79e-15 | 203 |
bone element | 7.17e-15 | 82 |
skeletal element | 1.11e-13 | 90 |
skeletal system | 2.54e-12 | 100 |
mesoderm | 4.47e-11 | 315 |
mesoderm-derived structure | 4.47e-11 | 315 |
presumptive mesoderm | 4.47e-11 | 315 |
developing anatomical structure | 9.72e-11 | 581 |
embryonic structure | 9.95e-11 | 564 |
germ layer | 3.35e-10 | 560 |
germ layer / neural crest | 3.35e-10 | 560 |
embryonic tissue | 3.35e-10 | 560 |
presumptive structure | 3.35e-10 | 560 |
germ layer / neural crest derived structure | 3.35e-10 | 560 |
epiblast (generic) | 3.35e-10 | 560 |
embryo | 1.09e-09 | 592 |
musculoskeletal system | 2.89e-08 | 167 |
neural tube | 6.72e-07 | 56 |
neural rod | 6.72e-07 | 56 |
future spinal cord | 6.72e-07 | 56 |
neural keel | 6.72e-07 | 56 |