FFCP PHASE1:Hg19::chr16:11650396..11650467,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=9516 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16841 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=118bp_to_EU446689,EU831762,EU831840_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_5_at_LITAF_5end | |||
|id=chr16:11650396..11650467,- | |||
|ontology_enrichment_celltype=CL:0000766!7.83e-26!76;CL:0000557!2.93e-23!71;CL:0002009!1.43e-22!65;CL:0002194!1.85e-21!63;CL:0000576!1.85e-21!63;CL:0000040!1.85e-21!63;CL:0000559!1.85e-21!63;CL:0002057!2.76e-20!42;CL:0000839!4.42e-20!70;CL:0000738!4.60e-20!140;CL:0000860!4.72e-20!45;CL:0002087!1.72e-16!119;CL:0002031!2.71e-16!124;CL:0000763!8.83e-13!112;CL:0000049!8.83e-13!112;CL:0002032!1.28e-11!165;CL:0000837!1.28e-11!165;CL:0000037!1.28e-11!172;CL:0000566!1.28e-11!172;CL:0000988!5.95e-11!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.50e-29;33!CL:0002057;2.50e-29;33!CL:0000473;1.23e-27;39!CL:0000234;1.23e-27;39!CL:0000576;8.51e-20;48!CL:0000766;1.84e-16;69!CL:0000738;3.40e-08;136!CL:0002087;6.34e-08;104!CL:0000763;7.49e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.15e-40,72;CL:0000557,3.88e-37,67;CL:0002009,2.50e-36,61;CL:0000473,4.01e-36,48;CL:0000234,4.01e-36,48;CL:0002194,1.70e-34,59;CL:0000576,1.70e-34,59;CL:0000040,1.70e-34,59;CL:0000559,1.70e-34,59;CL:0000839,3.37e-33,66;CL:0000860,2.35e-31,42;CL:0002057,2.35e-31,42;CL:0000738,9.88e-29,136;CL:0002031,4.18e-25,120;CL:0002087,4.56e-24,115;CL:0000763,2.41e-23,108;CL:0000049,2.41e-23,108;CL:0002032,1.51e-19,161;CL:0000837,1.51e-19,161;CL:0000037,2.94e-19,168;CL:0000988,1.47e-18,177;CL:0000094,6.10e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-23;42!CL:0000049;7.20e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.20e-22!102;UBERON:0003061!7.20e-22!102;UBERON:0002371!5.81e-18!80;UBERON:0002193!3.75e-17!112;UBERON:0001474!1.15e-16!86;UBERON:0004765!5.83e-13!101;UBERON:0001434!5.83e-13!101;UBERON:0002405!4.46e-12!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.26e-07;15!UBERON:0000179;2.26e-07;15!UBERON:0000463;2.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.08e-33,98;UBERON:0003061,2.08e-33,98;UBERON:0002371,2.53e-31,76;UBERON:0002193,3.89e-29,108;UBERON:0001474,1.03e-28,82;UBERON:0004765,3.03e-24,90;UBERON:0002405,7.76e-23,93;UBERON:0001434,1.37e-21,100;UBERON:0003081,4.64e-10,203;UBERON:0002204,1.45e-07,167;UBERON:0000178,2.15e-07,15;UBERON:0000179,2.15e-07,15;UBERON:0000463,2.15e-07,15 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.986680828671798,2.00146596706261,1.34088328328186,0.872338524100369,0,0,0,0.737201809504527,2.09340350391728,0.218441372130172,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0,0.738726348460727,0.204000691244253,0,0,0.684372125364421,0.376627918784408,1.45185470921107,0.57470412614962,0.944529375764151,1.96682138424452,1.91914699048606,0.619264493264304,0,1.50602959389125,5.9160641626686,0.232401601740905,0,0.293600439334847,2.21598163412751,3.60980005446255,1.73608696572681,2.46307021663917,0.971680998056939,1.80302897343931,9.30548728189214,10.9584023669755,4.60909716256851,10.9241647345672,17.6802191849385,8.981484755958,14.9600044007518,15.1134816852169,10.6417003449863,6.89491361473237,16.7826017731795,10.8341189275473,16.0005988611214,19.376336654107,7.64059847113288,14.9981107261742,13.4790191371959,12.7867425159808,10.5552416059749,12.9651377454061,8.52449501065388,11.6083695451434,12.4824749432051,16.8162007228805,18.3411525637423,11.9941071236646,11.2938199246661,11.502590550034,12.8897172595648,8.86094684834476,2.32380814943136,0.850417199860174,1.25795187305026,1.01095768031846,1.20141514273205,0.803627933485401,0,0,1.0959849225878,0,0,0.889509253863555,0,0.400395987036012,1.14950487990897,0,0,2.84606484554724,2.34894875748376,0.382273228125229,0,1.68152568894461,0.263384084775077,0.590129310341499,2.35806457649499,2.05601498999509,1.00311897234407,0,0.473447805734733,0,0.668462741311041,0.883817722424512,1.55073726208535,0.270803863765016,2.43373507478783,0.910415432919148,1.15106533222573,0.829050053357545,0.579606171470105,2.22429844743091,1.07016331235885,2.09071047609954,0.339928028092699,0.383220493601921,1.37450978193052,2.27717722817553,0.95569624297229,0.651083453856419,0,0.150575119077773,1.02389288923535,0,2.13099526839615,0,2.01606743224732,7.75576567772171,3.04131248153878,0,0.670700859703636,0.511450247374121,0.722878304769133,0,0.579386075843295,0,0.973269740605272,0.283604451492204,0.665188192387692,0.702678285545008,0.392937226493138,0.364295288292542,0.741568885568859,3.57002133020152,2.26368658489047,4.91944453919801,1.43094374583205,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.357198913136319,0.22452937262617,0.112611480483322,0,0,0,10.5424333948851,34.9002237733493,0.872188104285069,0.496971951695318,0.379891534993739,0.132409180813219,0,0.354668382198357,0.560677600142307,2.1349799145941,0.74000264525148,0.622422070799533,0.404132016209064,0.653847612453835,0.454072282934794,0,0,0.312160076830321,0,0,0.117434498643765,0,0.140450806702248,0.204154171254893,0.245668634623536,0.516628905878827,3.56400857184616,1.97813543422845,0,0,0.336672227908132,0.250237039743928,0,0,0,1.80285670687916,0.113432183160021,0.179389635688862,0.213557388818567,0.847727604638247,0.300091096084402,0.824420233907511,0,0.744467425326359,0.168776332241266,0.194874010322397,0,1.01254888506529,1.45481451136931,0,0.302256294682921,0.67824236924195,0.57978255948989,0.545492241181669,0.860413786167011,0.609868530647977,0.662648841607426,0.232387885739037,0.932949495138334,1.00928340350251,0.72995471815166,0,1.92972281457866,0,0.928735856063958,0,0.709840800239063,0.842923450390509,0.482022059766964,0.55146986366197,1.30727666455444,0.949082476444386,0.808987848960987,0.588664395376038,1.15424147083917,0,0,0.4115740113314,0,1.26755034821831,1.96565443335525,2.36315962672562,0,0.122988438543114,0,0.878002283269004,1.1240175325762,0.703702806881416,1.29623823221941,0,0,0,0.34779121492523,0.117408694235822,0.144366447761074,0,0,0,0.858486162094873,2.95460407304877,1.63802985597466,1.93220510975347,0,0.671928512795438,0.567100388969546,0.268675568108545,0.581267877027924,1.91691339582606,0,0.792435906119034,3.31724984865235,4.4677185559258,1.2624243342638,0.380987365753014,0.763976851116555,1.17217447210047,0,0.925447434329912,2.10240140490742,0.571652865261156,0,0,0.07333828582095,0.258543431515556,0,0,1.32969058292435,1.04007436911366,0,0,0,1.00084595560703,0.542621605391443,0.823240336780769,0,1.06617584622764,0,0,0,0.199945982364114,2.43247561282381,3.01354254859276,10.5416969741516,0.239624855491583,1.14861935834114,0,0,0,0,0.784596007954691,2.36436912242313,5.39068937148793,1.92514554419623,0.508189248444927,1.30139853857622,0,0,0,20.2231896465739,116.67296908957,16.9910360508775,0.613457458595699,0.500170521059677,0,4.78332981520856,4.46072471992904,3.46945313074656,1.99140405487612,1.50473049863859,9.09630016223939,0,0,0.368738337083406,0.781952530212746,0.195801157462741,0,0.413536052245775,3.66714141391649,2.45473382947922,0,0,0,0.248107807818777,0.306923946576125,0.841980283299221,0.768834895534206,0,0.482561763430822,0,0,0.355123450626254,0.164254312027618,0.519254429183621,0.232420756919918,0.483437798366489,1.60405176242628,1.47329582297434,0.34444334449382,0.364182336013434,1.31124414959424,0.451199612907412,0.539107359730903,0,1.46139224653261,0.211103257785751,0,0,0,0,0.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| |||
|short_description=p5@LITAF | |||
}} |
Revision as of 02:21, 12 January 2014
Short description: | p5@LITAF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_LITAF_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 118bp_to_EU446689, EU831762, EU831840_5end |
EntrezGene: | LITAF |
HGNC: | 16841 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.15e-40 | 72 |
granulocyte monocyte progenitor cell | 3.88e-37 | 67 |
macrophage dendritic cell progenitor | 2.50e-36 | 61 |
defensive cell | 4.01e-36 | 48 |
phagocyte | 4.01e-36 | 48 |
monopoietic cell | 1.70e-34 | 59 |
monocyte | 1.70e-34 | 59 |
monoblast | 1.70e-34 | 59 |
promonocyte | 1.70e-34 | 59 |
myeloid lineage restricted progenitor cell | 3.37e-33 | 66 |
classical monocyte | 2.35e-31 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.35e-31 | 42 |
leukocyte | 9.88e-29 | 136 |
hematopoietic lineage restricted progenitor cell | 4.18e-25 | 120 |
nongranular leukocyte | 4.56e-24 | 115 |
myeloid cell | 2.41e-23 | 108 |
common myeloid progenitor | 2.41e-23 | 108 |
hematopoietic oligopotent progenitor cell | 1.51e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.51e-19 | 161 |
hematopoietic stem cell | 2.94e-19 | 168 |
hematopoietic cell | 1.47e-18 | 177 |
granulocyte | 6.10e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.08e-33 | 98 |
blood island | 2.08e-33 | 98 |
bone marrow | 2.53e-31 | 76 |
hemolymphoid system | 3.89e-29 | 108 |
bone element | 1.03e-28 | 82 |
skeletal element | 3.03e-24 | 90 |
immune system | 7.76e-23 | 93 |
skeletal system | 1.37e-21 | 100 |
lateral plate mesoderm | 4.64e-10 | 203 |
musculoskeletal system | 1.45e-07 | 167 |
blood | 2.15e-07 | 15 |
haemolymphatic fluid | 2.15e-07 | 15 |
organism substance | 2.15e-07 | 15 |