FFCP PHASE1:Hg19::chr17:42081972..42081995,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=162417 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17996 | |||
|TSSclassifier=strong | |||
|UniProt=Q2NKP2 | |||
|association_with_transcript=-35bp_to_ENST00000541745_5end | |||
|description=CAGE_peak_1_at_NAGS_5end | |||
|id=chr17:42081972..42081995,+ | |||
|ontology_enrichment_celltype=CL:0002321!9.26e-11!248;CL:0000220!1.70e-10!246;CL:0002368!3.26e-09!13;CL:0000066!5.04e-07!254;CL:0002551!8.47e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002368;4.57e-15;13!CL:0002202;1.71e-10;9!CL:0002632;1.71e-10;9!CL:0002551;1.71e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,3.99e-15,13;CL:0002551,1.62e-10,6;CL:0002202,1.98e-10,9;CL:0002632,1.98e-10,9;CL:0002321,7.06e-09,250;CL:0002078,1.96e-07,45;CL:0000115,2.76e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.43e-24!312;UBERON:0000483!1.01e-23!309;UBERON:0000481!9.33e-22!347;UBERON:0000475!1.15e-21!365;UBERON:0000477!8.33e-16!286;UBERON:0005256!6.36e-15!143;UBERON:0000922!6.40e-15!612;UBERON:0004111!8.81e-15!241;UBERON:0000923!2.82e-14!604;UBERON:0005291!2.82e-14!604;UBERON:0006598!2.82e-14!604;UBERON:0002532!2.82e-14!604;UBERON:0002050!4.02e-14!605;UBERON:0005423!4.02e-14!605;UBERON:0002100!1.25e-13!216;UBERON:0000025!2.85e-13!194;UBERON:0000064!3.52e-13!219;UBERON:0000468!6.32e-12!659;UBERON:0000467!1.92e-11!625;UBERON:0000480!2.66e-11!626;UBERON:0000490!9.41e-11!138;UBERON:0003104!2.37e-10!238;UBERON:0009142!2.37e-10!238;UBERON:0000033!4.04e-09!123;UBERON:0005177!4.57e-09!107;UBERON:0000914!9.70e-09!83;UBERON:0002329!9.70e-09!83;UBERON:0003077!9.70e-09!83;UBERON:0003059!9.70e-09!83;UBERON:0007282!9.70e-09!83;UBERON:0009618!9.70e-09!83;UBERON:0007285!9.70e-09!83;UBERON:0000153!2.14e-08!129;UBERON:0007811!2.14e-08!129;UBERON:0004121!1.55e-07!169;UBERON:0007196!2.14e-07!14;UBERON:0001558!2.14e-07!14;UBERON:0000080!2.44e-07!18;UBERON:0002120!2.44e-07!18;UBERON:0004875!2.44e-07!18;UBERON:0005721!2.44e-07!18;UBERON:0005754!2.44e-07!18;UBERON:0007297!2.44e-07!18;UBERON:0009569!3.89e-07!113;UBERON:0003075!5.12e-07!86;UBERON:0007284!5.12e-07!86;UBERON:0004119!5.56e-07!169;UBERON:0000925!5.56e-07!169;UBERON:0006595!5.56e-07!169;UBERON:0000058!5.58e-07!26;UBERON:0003887!5.78e-07!21;UBERON:0003914!5.80e-07!118;UBERON:0003056!6.68e-07!61;UBERON:0000486!6.92e-07!82;UBERON:0000924!7.17e-07!173;UBERON:0006601!7.17e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;2.85e-10;15!UBERON:0001558;2.85e-10;15!UBERON:0002067;2.52e-08;9!UBERON:0000487;4.09e-07;22!UBERON:0000490;4.26e-07;33!UBERON:0000964;6.49e-07;4!UBERON:0010409;6.49e-07;4!UBERON:0005178;8.17e-07;34!UBERON:0002224;8.17e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,8.03e-11,148;UBERON:0000119,2.20e-10,309;UBERON:0007196,2.65e-10,15;UBERON:0001558,2.65e-10,15;UBERON:0000483,9.76e-10,306;UBERON:0002100,6.33e-09,199;UBERON:0002067,2.37e-08,9;UBERON:0004016,2.37e-08,9;UBERON:0010083,2.37e-08,9;UBERON:0005177,3.72e-08,101;UBERON:0003104,6.45e-08,160;UBERON:0009142,6.45e-08,160;UBERON:0005423,1.13e-07,581;UBERON:0009569,1.40e-07,112;UBERON:0005178,4.70e-07,34;UBERON:0002224,4.70e-07,34;UBERON:0000487,4.70e-07,22;UBERON:0000922,5.73e-07,592;UBERON:0000964,6.08e-07,4;UBERON:0010409,6.08e-07,4;UBERON:0004348,6.08e-07,4;UBERON:0005427,6.08e-07,4;UBERON:0005181,9.81e-07,35 | |||
|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0,0,3.15859936713415,1.30592814099919,2.21160542851358,9.07141518364156,0.873765488520689,2.37390280405608,1.73272894144065,0.662794751455832,0,0,0,0,0,0.612002073732759,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,6.43594857135249,6.92773613189975,5.17655614233503,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.639312809217652,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0.130979075497713,7.28590576585084,5.93255108455087,0,0,0,0,0,0,1.19257444420023,3.4409383804245,0,0,0,1.10047216776027,1.25396979922086,0.775250277507987,0,0.33472061276467,1.61131726843659,0.760272105718513,0.976248230192678,4.77962004449629,0,0.982297011124877,1.57170560838319,3.26573293401634,3.06633274931766,1.89853131913626,3.11442964681692,0,0,5.23312862571041,0,0,0,0.286836620748814,0,0,0,0,0,0.404132016209064,0.980771418680752,0,0.576175924479999,5.62371436401112,17.7931243793283,7.98660550162229,19.8766745133895,16.0885263141958,16.9966591586538,12.7810234099046,3.26646674007829,6.01888154827663,3.71972812232756,1.18800285728205,0,0,5.74894513452991,7.40678901397891,8.3829408314216,2.49357703935765,0,0,0.150238058906597,0.453728732640084,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0.860413786167011,0.121973706129595,0.397589304964456,0.348581828608555,0.414644220061482,0.252320850875628,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,1.4763109092493,2.80483547606892,0,0,27.8861076608028,28.5019892836512,28.9487054273888,0,0.368965315629341,0.686271241194102,0.439001141634502,7.86812272803337,1.00528972411631,3.42577247086559,3.58389135841357,12.4792174233549,2.88662684050547,0.231860809950154,0.117408694235822,0,0.462985512576611,0,0,0,0,0,0.148631162288728,1.87467667973554,0.335964256397719,0.708875486211932,0,0,0,0,0,0,0,0.50496973370552,0.190493682876507,0,0,0,0.514137463516618,0.300343057843917,0,2.24262168690721,0,1.6134422880609,0,7.15312891703765,7.607724773004,0,0,2.05765899409714,2.83698264046557,7.19339883343468,0.142977993658148,0,2.46972101034231,7.16619605446217,0,3.95975936466715,0,0,0,0,0,0,0,0,0,2.02693829334611,2.05476322550383,1.61154866915906,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,1.89885516589815,0,0,0,0,0,2.27407504055985,3.10419213877515,0,0.184369168541703,0.260650843404249,1.95801157462741,0.686286847621712,0,0,0,0,0,0.604780586659361,0,0.153461973288062,0,0,0,0,0,2.62156479464514,0.532685175939381,1.23190734020714,0,1.27831416305955,0,0.40101294060657,2.11786274552562,0,0,0,2.70719767744447,0.616122696835318,4.70609861506113,0,0.316654886678627,1.13733384070897,2.2112181685947,0.431831832204279,0,0.541892875087706,0.501689773854853,4.07802036872061,6.64860807142979,1.11937377361089,0,0,0,0.328014645699706,0,10.6132241997154,0,0,2.87132768998086,1.30012049207304,0,0.773365746336976,2.92692372517824,2.6095624703442,4.27293374702045,2.0409846524972,0.435050081742686,2.55679882248303,0,1.81813406897076,6.72665235777872,5.74257206225629,4.4509423576442,0,1.25924938732256,0.6970372701606,1.84820148105653,0,0,0,0,0.372158369359667,0.316379424718726,0.571890581771475,4.86205803491534,0.855877976067841,0.636406495851874,0,0.359744915166629,0.274537029736055,0.235624804691373,0,0,0.421258456238981,1.46290121726877,0.243713489631284,0,0,0,0,0.551365343546124,0,0,1.73632660280006,3.27947376023316,0.405820753925408,1.54911749049875,0.563391205064483,1.14729081763241,2.06322986127554,0.35667105148125,0.354761064070598,0,0,4.9331512589543,8.39843328587959,7.50532479258994,6.03272047982209,13.0669181833587,10.1675304838921,0.86101074534246,0,4.43430153536676,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0.146508179271894,0,0,5.11445064251544,1.43246690842614,0,0.307160702099232,0,0.281338832821026,0,2.47205811340139,0,0,0,0,0,0,0,1.25815691606258,0,0,0.591860433821602,0,0,3.87733098438087,0.556608588971108,0,0,0,0,0.796554137998498,0,0,0,0,0,0,0.723578631752448,0,0.552896299656123,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,1.27600463892768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,4.86516604768365,0.611030144933625,0,0,0,0.269604531922708,0,0.234264445725339,0,0,0,3.94584402849391,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.489961987071888,2.17648016451006,1.7472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.126621591911757,0.195551382734803,0.0801588202515337,0,0,1.72908500584927,0,0,0,2.73355578243952,2.12124631155116,0,0,0,0,1.20084057741958,1.50595916781192,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0.709048640765013,0.988990300573997,0.674035438541849,0,0,0.795229689809303,0.408610218334727,0.321506296930038,0.687697182986169,0.415440338029185,0.6749216746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| |||
|short_description=p1@NAGS | |||
}} |
Revision as of 15:36, 20 January 2014
Short description: | p1@NAGS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NAGS_5end |
Coexpression cluster: | NA |
Association with transcript: | -35bp_to_ENST00000541745_5end |
EntrezGene: | NAGS |
HGNC: | 17996 |
UniProt: | Q2NKP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 3.99e-15 | 13 |
fibroblast of dermis | 1.62e-10 | 6 |
epithelial cell of tracheobronchial tree | 1.98e-10 | 9 |
epithelial cell of lower respiratory tract | 1.98e-10 | 9 |
embryonic cell | 7.06e-09 | 250 |
meso-epithelial cell | 1.96e-07 | 45 |
endothelial cell | 2.76e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 8.03e-11 | 148 |
cell layer | 2.20e-10 | 309 |
tracheobronchial tree | 2.65e-10 | 15 |
lower respiratory tract | 2.65e-10 | 15 |
epithelium | 9.76e-10 | 306 |
trunk | 6.33e-09 | 199 |
dermis | 2.37e-08 | 9 |
dermatome | 2.37e-08 | 9 |
future dermis | 2.37e-08 | 9 |
trunk region element | 3.72e-08 | 101 |
mesenchyme | 6.45e-08 | 160 |
entire embryonic mesenchyme | 6.45e-08 | 160 |
developing anatomical structure | 1.13e-07 | 581 |
subdivision of trunk | 1.40e-07 | 112 |
thoracic cavity element | 4.70e-07 | 34 |
thoracic cavity | 4.70e-07 | 34 |
simple squamous epithelium | 4.70e-07 | 22 |
embryo | 5.73e-07 | 592 |
cornea | 6.08e-07 | 4 |
eye surface | 6.08e-07 | 4 |
optic eminence | 6.08e-07 | 4 |
corneal primordium | 6.08e-07 | 4 |
thoracic segment organ | 9.81e-07 | 35 |