FFCP PHASE1:Hg19::chr7:27169801..27169844,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3201 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000511914_5end | |||
|description=CAGE_peak_2_at_HOXA4_5end | |||
|id=chr7:27169801..27169844,- | |||
|ontology_enrichment_celltype=CL:0000222!1.57e-17!119;CL:0002139!4.05e-11!24;CL:1000497!5.34e-11!18;CL:0002518!5.34e-11!18;CL:0002078!1.31e-09!44;CL:1000449!2.20e-09!16;CL:0000115!2.67e-09!35;CL:0000071!3.39e-09!18;CL:0002546!3.39e-09!18;CL:0000213!1.19e-08!57;CL:0000215!1.19e-08!57;CL:0000076!2.13e-08!62;CL:0000680!4.01e-08!57;CL:0000056!4.01e-08!57;CL:0000355!4.01e-08!57;CL:0000183!8.42e-08!59;CL:1000507!8.67e-08!12;CL:1000494!8.67e-08!12;CL:0002681!9.69e-08!13;CL:0002584!9.69e-08!13;CL:0000187!1.96e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.95e-14;17!CL:0002518;5.95e-14;17!CL:1000449;2.21e-11;15!CL:0002139;1.21e-10;24!CL:0000071;3.23e-09;18!CL:0002078;7.69e-09;45!CL:0000115;8.58e-09;36!CL:0002681;8.60e-09;12!CL:0002584;8.60e-09;12!CL:1000507;1.15e-08;10!CL:1000494;1.15e-08;10!CL:0002539;1.22e-07;10!CL:0002543;3.23e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.49e-15,121;CL:1000497,8.34e-14,17;CL:0002518,8.34e-14,17;CL:0002078,1.24e-12,45;CL:1000449,3.02e-11,15;CL:0000115,7.71e-11,36;CL:0002139,9.81e-11,24;CL:0000071,1.75e-09,18;CL:0002546,1.75e-09,18;CL:0000213,4.29e-09,58;CL:0000215,4.29e-09,58;CL:1000507,7.79e-09,10;CL:1000494,7.79e-09,10;CL:0002681,1.33e-08,12;CL:0002584,1.33e-08,12;CL:0002539,9.12e-08,10;CL:0002543,1.88e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;3.23e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.47e-20!118;UBERON:0002100!9.18e-17!216;UBERON:0000489!1.64e-15!32;UBERON:0009569!2.71e-15!113;UBERON:0000490!8.85e-15!138;UBERON:0000055!2.11e-14!69;UBERON:0001981!5.52e-14!60;UBERON:0007500!5.52e-14!60;UBERON:0004537!5.52e-14!60;UBERON:0006965!5.52e-14!60;UBERON:0005256!6.18e-14!143;UBERON:0000483!1.54e-13!309;UBERON:0000119!5.85e-13!312;UBERON:0004111!6.05e-13!241;UBERON:0003103!6.71e-13!69;UBERON:0002113!9.12e-13!27;UBERON:0003918!9.12e-13!27;UBERON:0005095!9.12e-13!27;UBERON:0007687!9.12e-13!27;UBERON:0001008!1.26e-12!45;UBERON:0002417!1.67e-12!61;UBERON:0000916!1.67e-12!61;UBERON:0003104!1.79e-12!238;UBERON:0009142!1.79e-12!238;UBERON:0000025!1.81e-12!194;UBERON:0005172!2.73e-12!55;UBERON:0005173!2.73e-12!55;UBERON:0006554!3.26e-12!44;UBERON:0005177!8.72e-12!107;UBERON:0004872!1.58e-11!84;UBERON:0000926!1.74e-11!448;UBERON:0004120!1.74e-11!448;UBERON:0006603!1.74e-11!448;UBERON:0002385!7.45e-11!63;UBERON:0001015!7.45e-11!63;UBERON:0000383!7.45e-11!63;UBERON:0002049!1.21e-10!79;UBERON:0007798!1.21e-10!79;UBERON:0003887!1.46e-10!21;UBERON:0000080!1.83e-10!18;UBERON:0002120!1.83e-10!18;UBERON:0004875!1.83e-10!18;UBERON:0005721!1.83e-10!18;UBERON:0005754!1.83e-10!18;UBERON:0007297!1.83e-10!18;UBERON:0001134!2.72e-10!61;UBERON:0002036!2.72e-10!61;UBERON:0003082!2.72e-10!61;UBERON:0004876!3.24e-10!20;UBERON:0006555!6.00e-10!17;UBERON:0005103!6.00e-10!17;UBERON:0000083!6.00e-10!17;UBERON:0009201!6.00e-10!17;UBERON:0004819!6.00e-10!17;UBERON:0006553!6.00e-10!17;UBERON:0003074!6.00e-10!17;UBERON:0003060!6.00e-10!17;UBERON:0003064!7.37e-10!37;UBERON:0004211!2.20e-09!16;UBERON:0001285!2.20e-09!16;UBERON:0007684!2.20e-09!16;UBERON:0003220!2.20e-09!16;UBERON:0004208!2.20e-09!16;UBERON:0001986!3.39e-09!18;UBERON:0004638!3.39e-09!18;UBERON:0004852!3.39e-09!18;UBERON:0004290!5.13e-09!70;UBERON:0001637!7.98e-09!42;UBERON:0003509!7.98e-09!42;UBERON:0004572!7.98e-09!42;UBERON:0000487!1.18e-08!22;UBERON:0000466!1.32e-08!126;UBERON:0000475!1.68e-08!365;UBERON:0003886!4.91e-08!63;UBERON:0009773!8.67e-08!12;UBERON:0001231!8.67e-08!12;UBERON:0004810!8.67e-08!12;UBERON:0000467!9.07e-08!625;UBERON:0001225!9.69e-08!13;UBERON:0008987!9.69e-08!13;UBERON:0000480!1.20e-07!626;UBERON:0000464!1.26e-07!104;UBERON:0000477!1.67e-07!286;UBERON:0000486!2.09e-07!82;UBERON:0000468!2.56e-07!659;UBERON:0000353!5.01e-07!17;UBERON:0000058!6.38e-07!26;UBERON:0001009!7.07e-07!113;UBERON:0004535!7.15e-07!110;UBERON:0006914!9.26e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;4.81e-16;29!UBERON:0002113;5.13e-13;24!UBERON:0011143;5.13e-13;24!UBERON:0006554;1.00e-11;30!UBERON:0001008;1.00e-11;30!UBERON:0006555;2.21e-11;15!UBERON:0004819;2.21e-11;15!UBERON:0001285;2.21e-11;15!UBERON:0007684;2.21e-11;15!UBERON:0003914;5.18e-10;74!UBERON:0000487;1.42e-09;22!UBERON:0002385;2.83e-09;31!UBERON:0001015;2.83e-09;31!UBERON:0000383;2.83e-09;31!UBERON:0004638;3.23e-09;18!UBERON:0001986;3.23e-09;18!UBERON:0004852;3.23e-09;18!UBERON:0001225;8.60e-09;12!UBERON:0008987;8.60e-09;12!UBERON:0004211;1.15e-08;10!UBERON:0009773;1.15e-08;10!UBERON:0001231;1.15e-08;10!UBERON:0004810;1.15e-08;10!UBERON:0000353;2.76e-08;15!UBERON:0005172;4.07e-08;52!UBERON:0005173;4.07e-08;52!UBERON:0006914;6.17e-08;25!UBERON:0000055;6.51e-08;65!UBERON:0001851;6.89e-08;15!UBERON:0004237;1.22e-07;10!UBERON:0004695;1.22e-07;10!UBERON:0002111;1.22e-07;10!UBERON:0004178;1.22e-07;10!UBERON:0000025;1.69e-07;93!UBERON:0007500;1.81e-07;56!UBERON:0001981;1.81e-07;56!UBERON:0004537;1.81e-07;56!UBERON:0002417;5.82e-07;58!UBERON:0000916;5.82e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,9.51e-20,117;UBERON:0000489,1.89e-17,31;UBERON:0009569,6.94e-15,112;UBERON:0000025,1.07e-14,192;UBERON:0002113,2.49e-14,26;UBERON:0003918,2.49e-14,26;UBERON:0011143,2.49e-14,26;UBERON:0005095,2.49e-14,26;UBERON:0007687,2.49e-14,26;UBERON:0002100,3.44e-14,199;UBERON:0005172,2.14e-13,54;UBERON:0005173,2.14e-13,54;UBERON:0000055,2.80e-13,68;UBERON:0005177,3.46e-13,101;UBERON:0007500,6.64e-13,59;UBERON:0001981,6.64e-13,59;UBERON:0004537,6.64e-13,59;UBERON:0006965,6.64e-13,59;UBERON:0004111,1.02e-12,240;UBERON:0003104,2.99e-12,160;UBERON:0009142,2.99e-12,160;UBERON:0006555,3.70e-12,16;UBERON:0004819,3.70e-12,16;UBERON:0002417,5.62e-12,60;UBERON:0000916,5.62e-12,60;UBERON:0004211,3.02e-11,15;UBERON:0009773,3.02e-11,15;UBERON:0001231,3.02e-11,15;UBERON:0001285,3.02e-11,15;UBERON:0007684,3.02e-11,15;UBERON:0004208,3.02e-11,15;UBERON:0004872,1.19e-10,83;UBERON:0003103,1.69e-10,68;UBERON:0002049,2.80e-10,78;UBERON:0007798,2.80e-10,78;UBERON:0000483,4.27e-10,306;UBERON:0000119,8.79e-10,309;UBERON:0000487,9.29e-10,22;UBERON:0004638,1.75e-09,18;UBERON:0001986,1.75e-09,18;UBERON:0004852,1.75e-09,18;UBERON:0005256,3.99e-09,122;UBERON:0004810,7.79e-09,10;UBERON:0001225,1.33e-08,12;UBERON:0008987,1.33e-08,12;UBERON:0001008,3.57e-08,48;UBERON:0000353,4.12e-08,15;UBERON:0006914,4.30e-08,25;UBERON:0000490,7.03e-08,148;UBERON:0002385,7.29e-08,64;UBERON:0001015,7.29e-08,64;UBERON:0000383,7.29e-08,64;UBERON:0004237,9.12e-08,10;UBERON:0004695,9.12e-08,10;UBERON:0002111,9.12e-08,10;UBERON:0004178,9.12e-08,10;UBERON:0006554,1.12e-07,47;UBERON:0007503,1.17e-07,78;UBERON:0001851,1.20e-07,15;UBERON:0001134,1.36e-07,62;UBERON:0002036,1.36e-07,62;UBERON:0003082,1.36e-07,62 | |||
|phase1_expression=0,0.214100523890983,0.845726424575827,0,0,1.74467704820074,0,0.631719873426831,0.522371256399677,3.93174298402414,0.697801167972428,0.218441372130172,0.263766978228454,0,0.331397375727916,2.6893005858071,1.80808358407193,4.38186054232424,2.43966399395253,0.492484232307152,0.408001382488506,0.940364164434263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0.39752481473341,0,1.38856200643038,2.26123176769604,0.838998872419812,1.6507082516404,0.835979866147242,1.29208379584664,1.42306505074684,1.00416183829401,2.81980521976403,3.80136052859256,2.4406205754817,3.67663080345869,0.81014194788176,1.87529429396568,3.14341121676638,3.49095589498299,1.53316637465883,2.84779697870439,1.28241220751285,0,0,0,3.47880366186723,0.25326102332916,0.529636723252875,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448346041655403,0.704606991862589,0.323745888736263,0.280901613404497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0.358779271377724,0.213557388818567,0.847727604638247,0,0.92747276314595,0.515281080091258,0.37223371266318,0.168776332241266,0.487185025805993,0.757301322732344,1.19664868234989,0,0,1.0075209822764,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16708818237254,0,1.2347220339942,2.94017422771084,0,0,0.590789906681404,0,0.614942192715568,0,0.768251997860379,0,0.201057944823262,0,0,0,0,0,0,0.433099343283221,1.38895653772983,0.570762456703795,0,0,0,0,0,0,0,0,0.0895585227028483,0.581267877027924,0,1.47798971368783,0.176096868026452,0.207328115540772,0.432359860250884,0.25248486685276,0.253991577168676,0,0,0,0.102827492703324,0,0,0,0,0,0.775630294546667,0,0.845302752556,0,0,0.771622122786426,0,1.3321108950805,0.857867961948885,0,0,0.65147236858747,1.42156779497018,0,2.71295439353627,0.871533458600294,2.19940580600526,0,0,0,0,0,1.42636905040718,0.434343920002738,0.410952645100767,1.79060963239896,0.560425719967636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0.601892199455438,0,0,0.664225598535437,0.737476674166813,0,0,0,0,0.215714200818617,0,0.303127571446259,0,0,0.744323423456331,0.153461973288062,0.841980283299221,0.768834895534206,1.02341449813341,0.804269605718038,0,0.462629081407967,0,1.56041596426237,1.55776328755086,0.464841513839837,0.604297247958111,0.802025881213139,0.0920809889358963,0.114814448164607,0,0.131124414959424,1.35359883872224,1.84836809050595,3.92174884588428,1.46139224653261,1.37217117560738,1.13733384070897,3.57196781080683,1.0795795805107,3.08454505380579,0.541892875087706,2.00675909541941,3.3133915495855,1.66215201785745,3.35812132083267,0,0,0,0,0,0.206082023295445,2.01452822600355,2.64030399745882,1.14853107599234,0,0,2.03008508413456,1.69453478826109,1.07452572308291,0.137836572484531,0.537101224341368,0.145016693914229,0.170453254832202,0.712256285173899,0,0,0,0,4.64845549297286,1.25924938732256,2.7881490806424,0.308033580176089,0,4.34966496037536,0.55597265731176,0.286249773483982,0,0,0.190630193923825,2.303080121802,0.855877976067841,0,0,0,0,0,0.202182481573316,0,0,3.41343617362713,3.89941583410055,3.16950440270266,0.136499911407986,0.424216295861138,3.39024349860728,8.27048015319186,0,0.438450885253763,2.89387767133344,0.655894752046633,1.82619339266434,0.30982349809975,0.281695602532241,0,0.196498082026242,1.426684205925,0.354761064070598,0,0,0,0,0.192444225451024,0,0,0.847294206991012,0,1.68471475667626,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0.962479855263359,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,1.31857361344705,0,0,1.13654458722565,0.23874448473769,0,0.307160702099232,0,0,0,0,0.211125408127993,2.39097585901284,0.552567831062295,0,6.95427041014653,0,0,0,0,0,1.38100767891707,0,0,0,0,0,0,0,1.44999915086959,0,0,1.18193840883968,1.72371686620732,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69694774225673,4.73375143661528,0.565412285735763,0.649165919226273,0,0.619202951523374,0,0.296521128680622,0,0,0,4.81546588379273,0,0,0,0,1.57833761139756,2.41981432097328,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0.853828638089378,0,0.173559738335131,1.17590876897253,1.30588809870604,1.92199335066233,0,0,0,0,6.69224213770094,0,0,3.83717389010903,2.38457534043588,0,0.391102765469606,0,0.426905989478705,0.19980960958213,0.864542502924636,6.98673236612086,7.72177490378841,0,0,1.41416420770077,0,0.104602846312333,0,0,0,0,0,1.71906176567983,0,1.39641200636127,0.687481272035051,0,0,0.429226048136571,0.223171457441873,0.53746777989381,0.720599767084807,1.16495949527454,3.15132729228895,2.55489160981616,2.49393112260484,0,0,0,0,0,0,0,0,0,0,0,2.04894838977915,2.15063811353492,0,0,0.959575986597226,1.42939065274673,0.662091970365432,1.017074150619,0,0,0.653174720218818,0,0,2.72620834856675,3.05942647104339,0.146552233678082,0,2.84422503995411,0.26446520348538,0,0,2.99004755189545,3.77290332239198,0.414239055347196,0,0,0,2.55336503108073,0,1.0027595760908,0,0,0,0,0,0,1.14681839138014,4.99180731915835,11.7362201559215,0,0.624902039810533,1.36484205787483,0.285465333544967,0,4.21501415226193,0.869526171664951,0.149254802886874,0.467426619694449,0.554805861502613,1.7046270474758,1.0062716070103,0,2.05956061557231,0.756154618816195,1.08806040407946,1.03498604992744,1.27437413730962,2.24901556081802,1.55262956876259,1.65882483136342,1.59505028734797,0,4.95850109690821,0.380805212168795,0.813741466409323,0.181848659202559,2.57785336901972,0.464033759878494,0.398095888698616,0.400027764663154,0.686791410365586,0.336749488765919,0,1.15571898244382,0,0,0.680117776536817,5.78806185809585,0.244736704506468,0.179088841081487,0.308801447160972,5.92066933862509,0,1.15748422962549,0,0,0,0.911579868532147,0,0,0,0,0,2.70350199629091,0,0,1.17360902663555,0,0,1.84105950251841,0,0,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0.471878893390961,0.183428598521679,0.115525666150338,1.1441462864015,7.59395918666111,0.994581110581374,1.27857558193737,8.0682027481408,0,0,0,0,0.0675375846183947,0,0,0,0,0,3.47347824872506,0,1.91643641459393,0,0,0,0,0,0,0,3.39848664884159,0.0657727735628491,0,0.667388411352415,1.17739639275771,0,0,1.82631744101899,10.5804519697124,7.6440270061928,0,0,0,2.43401581223611,0,0,0,0,0,0.828324005113957,0.852134047591577,1.69354820076372,0,0,0,1.56597604516909,0,0,14.8908632553216,5.85177999080608,5.799072156691,0.971421986118279,2.57333409808316,0.596852325484105,2.14056163399623,0,0.109940516745429,3.62310824560016,0.385870790539723,1.09279780251979,0,1.71603825227734,0,10.4043487570921,7.72320640850424,1.6906229103336,0.169927114687817,2.16163011353663,1.4180735354187,0,1.07132363163395,0,0,0.730336388246517,0,0,0,0,0,0.5290268405154,0.743990036333503,0,0.432626562123789,0,0,0,0.101988829741982,0,0.18378979906969,0.50141507858475,0.454672189309436,0,0,0.103432995861895,1.70587185520785,0.714193294391221,0,0.434523000071005,0,0.445530107947154,0,1.08858373948481,0.342233301085281,0.336760265072938,2.58199939413635,0.332660356546013,0.651226148887796,0.320182037633146,1.9307228228694,0,2.34640942403454,0.366724332548599,0,1.33151354837103,1.81146414231924,0 | |||
|short_description=p2@HOXA4 | |||
}} |
Revision as of 16:12, 22 January 2014
Short description: | p2@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000511914_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.49e-15 | 121 |
kidney cell | 8.34e-14 | 17 |
kidney epithelial cell | 8.34e-14 | 17 |
meso-epithelial cell | 1.24e-12 | 45 |
epithelial cell of nephron | 3.02e-11 | 15 |
endothelial cell | 7.71e-11 | 36 |
endothelial cell of vascular tree | 9.81e-11 | 24 |
blood vessel endothelial cell | 1.75e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.75e-09 | 18 |
lining cell | 4.29e-09 | 58 |
barrier cell | 4.29e-09 | 58 |
kidney tubule cell | 7.79e-09 | 10 |
nephron tubule epithelial cell | 7.79e-09 | 10 |
kidney cortical cell | 1.33e-08 | 12 |
renal cortical epithelial cell | 1.33e-08 | 12 |
aortic smooth muscle cell | 9.12e-08 | 10 |
vein endothelial cell | 1.88e-07 | 6 |